ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast42g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC182459.3| Pan troglodytes BAC clone CH251-706C19 from chrom... 44 0.35
2emb|AL772307.15| Human DNA sequence from clone RP11-416B15 on ch... 44 0.35
3emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on ch... 44 0.35
4emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chro... 44 0.35
5emb|AL591438.6| Human DNA sequence from clone RP11-452D2 on chro... 44 0.35
6emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chr... 44 0.35
7emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on ch... 44 0.35
8emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chro... 44 0.35
9emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chr... 44 0.35
10gb|L36951.1|TFEMADE Thiobacillus versutus membrane protein (madE... 44 0.35
11gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.4
12gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence 42 1.4
13gb|AE012525.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.4
14gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.4
15gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.4
16emb|AL928852.7| Zebrafish DNA sequence from clone CH211-287A12, ... 42 1.4
17gb|AY338677.2| Lestes sp. OD09 28S ribosomal RNA gene, partial s... 42 1.4
18gb|AY338675.1| Hetaerina americana 28S ribosomal RNA gene, parti... 42 1.4
19gb|AF127982.2| Burkholderia cenocepacia GspE (gspE) gene, partia... 40 5.5
20gb|AC146526.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
21gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 5.5
22gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.5
23gb|AY143389.1| Eimeria tenella lactate dehydrogenase (LDH) mRNA,... 40 5.5
24gb|AF377377.1| Zea mays isolate MEX48 kaurene synthase A gene, p... 40 5.5
25gb|AC166261.6| Mus musculus BAC RP23-343K20 (Roswell Park Cance... 40 5.5
26emb|CT009638.5| Zebrafish DNA sequence from clone CH73-162A18 in... 40 5.5
27emb|CR848788.7| Zebrafish DNA sequence from clone DKEY-283B15 in... 40 5.5
28emb|Z46933.1|CEF34H10 Caenorhabditis elegans Cosmid F34H10, comp... 40 5.5
29gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.5
30emb|AL357052.15| Human DNA sequence from clone RP11-686D16 on ch... 40 5.5
31emb|CR628362.8| Zebrafish DNA sequence from clone DKEY-74A12 in ... 40 5.5
32gb|DQ115832.1| Cyanobacteria phage AS-1 contig_25 genomic sequence 40 5.5
33emb|BX649520.20| Zebrafish DNA sequence from clone DKEY-174E3 in... 40 5.5
34emb|CR384103.7| Zebrafish DNA sequence from clone DKEY-215K6 in ... 40 5.5
35emb|BX284673.9| Zebrafish DNA sequence from clone DKEY-71P21 in ... 40 5.5
36emb|BX640477.6| Zebrafish DNA sequence from clone DKEY-43N16 in ... 40 5.5
37gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.5
38gb|AC003105.3| Arabidopsis thaliana chromosome 2 clone F18A8 map... 40 5.5
39gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.5
40gb|AC156954.5| Mus musculus 6 BAC RP24-343M7 (Roswell Park Cance... 40 5.5
41emb|BX323810.8| Zebrafish DNA sequence from clone CH211-153K16 i... 40 5.5
42dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
43dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
44dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
45dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
46dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
47dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.5
48dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.5
49dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.5
50dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
51dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
52dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
53dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
54dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
55dbj|AP005698.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
56gb|AC153903.5| Mus musculus 6 BAC RP23-20C5 (Roswell Park Cancer... 40 5.5
57dbj|AK101777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
58dbj|AK066631.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
59emb|CR387935.16| Zebrafish DNA sequence from clone CH211-212O1 i... 40 5.5
60gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 5.5
61gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
62gb|AC161463.3| Gallus gallus BAC clone CH261-127J9 from chromoso... 40 5.5
63emb|BX004800.12| Zebrafish DNA sequence from clone DKEY-18F22, c... 40 5.5
64gb|AC004562.1|AC004562 Homo sapiens chromosome 17, clone hRPC.34... 40 5.5
65gb|AC002539.1|AC002539 Homo sapiens chromosome 17, clone 195o20,... 40 5.5
66dbj|AP006683.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.5
67emb|AL513356.8| Mouse DNA sequence from clone RP23-193O17 on chr... 40 5.5 
>gb|AC182459.3| Pan troglodytes BAC clone CH251-706C19 from chromosome 4, complete
              sequence
          Length = 166951

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 246    ctaaagagtgaaaatgagaatt 267
              ||||||||||||||||||||||
Sbjct: 111865 ctaaagagtgaaaatgagaatt 111886
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>emb|AL772307.15| Human DNA sequence from clone RP11-416B15 on chromosome 9 Contains a
              pseudogene similar to part of ribosomal protein L7a (RPL7A)
              and a CpG island, complete sequence
          Length = 161380

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 246    ctaaagagtgaaaatgagaatt 267
              ||||||||||||||||||||||
Sbjct: 109196 ctaaagagtgaaaatgagaatt 109175
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>emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on chromosome 9 Contains
            three novel pseudogenes, a pseudogene similar to part of
            meprin A, alpha (PABA peptide hydrolase) (MEP1A), a
            pseudogene similar to part of G protein-coupled receptor
            116 (GPR116), two novel genes, the 5' end of a novel gene
            similar to ankyrin repeat domain 20A (ANKRD20A) and three
            CpG islands, complete sequence
          Length = 165886

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 246  ctaaagagtgaaaatgagaatt 267
            ||||||||||||||||||||||
Sbjct: 5400 ctaaagagtgaaaatgagaatt 5379
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>emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chromosome 9 Contains a novel
              gene, two novel pseudogenes, a  pseudogene similar to part
              of myosin V family protein, a tumor suppressor deleted in
              oral cancer-related 1 (DOC-1R) pseudogene, a pseudogene
              similar to part of prostaglandin E receptor 4 (subtype EP4)
              (PTGER4) and a CpG island, complete sequence
          Length = 163569

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 246    ctaaagagtgaaaatgagaatt 267
              ||||||||||||||||||||||
Sbjct: 106146 ctaaagagtgaaaatgagaatt 106167
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>emb|AL591438.6| Human DNA sequence from clone RP11-452D2 on chromosome 9 Contains a
             pseudogene similar to part of ribosomal protein L7a
             (RPL7A), a novel pseudogene and a CpG island, complete
             sequence
          Length = 176097

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 246   ctaaagagtgaaaatgagaatt 267
             ||||||||||||||||||||||
Sbjct: 47722 ctaaagagtgaaaatgagaatt 47743
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>emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chromosome 9 Contains two
             novel pseudogene, a CDRT15 protein pseudogene, a
             pseudogene similar to part of meprin A, alpha (PABA
             peptide hydrolase) (MEP1A) and two CpG islands, complete
             sequence
          Length = 178933

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 246   ctaaagagtgaaaatgagaatt 267
             ||||||||||||||||||||||
Sbjct: 57981 ctaaagagtgaaaatgagaatt 57960
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>emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on chromosome 9 Contains a
             pseudogene similar to part of ribosomal protein L7a
             (RPL7A), three novel genes, three novel pseudogene and two
             CpG islands, complete sequence
          Length = 175271

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 246   ctaaagagtgaaaatgagaatt 267
             ||||||||||||||||||||||
Sbjct: 92188 ctaaagagtgaaaatgagaatt 92167
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>emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chromosome 9 Contains a tumor
              suppressor deleted in oral cancer-related 1 (DOC-1R)
              pseudogene, a novel pseudogene and a CpG island, complete
              sequence
          Length = 163556

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 246    ctaaagagtgaaaatgagaatt 267
              ||||||||||||||||||||||
Sbjct: 106162 ctaaagagtgaaaatgagaatt 106183
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>emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chromosome 22, complete
             sequence
          Length = 219376

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 246   ctaaagagtgaaaatgagaatt 267
             ||||||||||||||||||||||
Sbjct: 11280 ctaaagagtgaaaatgagaatt 11259
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>gb|L36951.1|TFEMADE Thiobacillus versutus membrane protein (madE) and (madD) mRNA,
           complete cds
          Length = 1171

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 26  gccgggcggtggcgatggtgccgcaggtgg 55
           ||||||||||||||||||||| || |||||
Sbjct: 152 gccgggcggtggcgatggtgctgccggtgg 181
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 66      cgccggccgcgcgcggctgga 86
               |||||||||||||||||||||
Sbjct: 1989156 cgccggccgcgcgcggctgga 1989136
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>gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence
          Length = 130987

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 261   gagaatttgaaagattttata 281
             |||||||||||||||||||||
Sbjct: 93915 gagaatttgaaagattttata 93895
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>gb|AE012525.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 433 of
             460 of the complete genome
          Length = 11152

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 46    ccgcaggtggagaacctcgccgccg 70
             ||||||||||| |||||||||||||
Sbjct: 10698 ccgcaggtggaaaacctcgccgccg 10674
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 46      ccgcaggtggagaacctcgccgccg 70
               ||||||||||| |||||||||||||
Sbjct: 4867952 ccgcaggtggaaaacctcgccgccg 4867928
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 60      cctcgccgccggccgcgcgcg 80
               |||||||||||||||||||||
Sbjct: 3829388 cctcgccgccggccgcgcgcg 3829368



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 51      ggtggagaacctcgccgccggccgcgcg 78
               ||||||| ||| ||||||||||||||||
Sbjct: 4619532 ggtggaggaccccgccgccggccgcgcg 4619505



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     ggccgcgcgcggctggaggc 89
              ||||||||||||||||||||
Sbjct: 822011 ggccgcgcgcggctggaggc 821992
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>emb|AL928852.7| Zebrafish DNA sequence from clone CH211-287A12, complete sequence
          Length = 157466

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 257    aaatgagaatttgaaagattttata 281
              |||||||||||||||| ||||||||
Sbjct: 143770 aaatgagaatttgaaatattttata 143746
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>gb|AY338677.2| Lestes sp. OD09 28S ribosomal RNA gene, partial sequence
          Length = 1344

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 212 gccctgcggcgacggccgggt 232
           |||||||||||||||||||||
Sbjct: 768 gccctgcggcgacggccgggt 748
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>gb|AY338675.1| Hetaerina americana 28S ribosomal RNA gene, partial sequence
          Length = 2002

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 212  gccctgcggcgacggccgggt 232
            |||||||||||||||||||||
Sbjct: 1478 gccctgcggcgacggccgggt 1458
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>gb|AF127982.2| Burkholderia cenocepacia GspE (gspE) gene, partial cds; GspF (gspF),
            GspG (gspG), GspH (gspH), and GspI (gspI) genes, complete
            cds; and GspJ (gspJ) gene, partial cds
          Length = 4850

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 55   gagaacctcgccgccggccgcgcg 78
            |||| |||||||||||||||||||
Sbjct: 1144 gagatcctcgccgccggccgcgcg 1167
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>gb|AC146526.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0027D12 map near 50283S, complete sequence
          Length = 128988

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    aacctcgccgccggccgcgc 77
             ||||||||||||||||||||
Sbjct: 33764 aacctcgccgccggccgcgc 33783
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 221     cgacggccgggtgttcgccg 240
               ||||||||||||||||||||
Sbjct: 2539504 cgacggccgggtgttcgccg 2539485
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 61      ctcgccgccggccgcgcgcg 80
               ||||||||||||||||||||
Sbjct: 1973771 ctcgccgccggccgcgcgcg 1973752
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>gb|AY143389.1| Eimeria tenella lactate dehydrogenase (LDH) mRNA, complete cds
          Length = 1876

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 62  tcgccgccggccgcgcgcggctgg 85
           ||||||||||||||||||| ||||
Sbjct: 869 tcgccgccggccgcgcgcgtctgg 846
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>gb|AF377377.1| Zea mays isolate MEX48 kaurene synthase A gene, partial cds
          Length = 668

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 33  ggtggcgatggtgccgcaggtgga 56
           |||||||||||||||| |||||||
Sbjct: 165 ggtggcgatggtgccgaaggtgga 188
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>gb|AC166261.6| Mus musculus  BAC RP23-343K20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190585

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    gaaaatgagaatttgaaaga 274
              ||||||||||||||||||||
Sbjct: 173269 gaaaatgagaatttgaaaga 173250
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>emb|CT009638.5| Zebrafish DNA sequence from clone CH73-162A18 in linkage group 6,
             complete sequence
          Length = 101890

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   aaatgagaatttgaaagattttat 280
             |||||||||||||||| |||||||
Sbjct: 95857 aaatgagaatttgaaatattttat 95880
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>emb|CR848788.7| Zebrafish DNA sequence from clone DKEY-283B15 in linkage group 16,
              complete sequence
          Length = 189441

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 257    aaatgagaatttgaaagattttat 280
              |||||||||||||||| |||||||
Sbjct: 130395 aaatgagaatttgaaatattttat 130418
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>emb|Z46933.1|CEF34H10 Caenorhabditis elegans Cosmid F34H10, complete sequence
          Length = 27717

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 320  gcagcaattttcccagtggc 339
            ||||||||||||||||||||
Sbjct: 8521 gcagcaattttcccagtggc 8540
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 36      ggcgatggtgccgcaggtgg 55
               ||||||||||||||||||||
Sbjct: 2508110 ggcgatggtgccgcaggtgg 2508091
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>emb|AL357052.15| Human DNA sequence from clone RP11-686D16 on chromosome 6 Contains a
             novel gene and a ribosomal protein L5 (RPL5) (MSTP030)
             pseudogene, complete sequence
          Length = 106288

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   tgagaacatgcggatgtggg 183
             ||||||||||||||||||||
Sbjct: 97616 tgagaacatgcggatgtggg 97635
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>emb|CR628362.8| Zebrafish DNA sequence from clone DKEY-74A12 in linkage group 18,
             complete sequence
          Length = 200732

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 257   aaatgagaatttgaaagattttat 280
             |||||||||||||||| |||||||
Sbjct: 49690 aaatgagaatttgaaatattttat 49667
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>gb|DQ115832.1| Cyanobacteria phage AS-1 contig_25 genomic sequence
          Length = 1532

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 88   gctgtgagcgcgctgcagca 107
            ||||||||||||||||||||
Sbjct: 1103 gctgtgagcgcgctgcagca 1122
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>emb|BX649520.20| Zebrafish DNA sequence from clone DKEY-174E3 in linkage group 13,
              complete sequence
          Length = 219709

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 257    aaatgagaatttgaaagattttat 280
              |||||||||||||||| |||||||
Sbjct: 190748 aaatgagaatttgaaatattttat 190771
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>emb|CR384103.7| Zebrafish DNA sequence from clone DKEY-215K6 in linkage group 5,
             complete sequence
          Length = 142808

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   aaatgagaatttgaaagattttat 280
             |||||||||||||||| |||||||
Sbjct: 31570 aaatgagaatttgaaatattttat 31593
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>emb|BX284673.9| Zebrafish DNA sequence from clone DKEY-71P21 in linkage group 13,
              complete sequence
          Length = 171564

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 257    aaatgagaatttgaaagattttat 280
              |||||||||||||||| |||||||
Sbjct: 118117 aaatgagaatttgaaatattttat 118094
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>emb|BX640477.6| Zebrafish DNA sequence from clone DKEY-43N16 in linkage group 10,
              complete sequence
          Length = 258048

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 257    aaatgagaatttgaaagattttat 280
              |||||||||||||||| |||||||
Sbjct: 188800 aaatgagaatttgaaatattttat 188823
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 36      ggcgatggtgccgcaggtgg 55
               ||||||||||||||||||||
Sbjct: 3496687 ggcgatggtgccgcaggtgg 3496706



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 221     cgacggccgggtgttcgccg 240
               ||||||||||||||||||||
Sbjct: 2060898 cgacggccgggtgttcgccg 2060879
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>gb|AC003105.3| Arabidopsis thaliana chromosome 2 clone F18A8 map B68, complete
             sequence
          Length = 95167

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   aatttgaaagattttataca 283
             ||||||||||||||||||||
Sbjct: 30528 aatttgaaagattttataca 30547
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      cctcgccgccggccgcgcgc 79
               ||||||||||||||||||||
Sbjct: 3507254 cctcgccgccggccgcgcgc 3507235
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>gb|AC156954.5| Mus musculus 6 BAC RP24-343M7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 179140

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    gaaaatgagaatttgaaaga 274
              ||||||||||||||||||||
Sbjct: 171688 gaaaatgagaatttgaaaga 171707
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>emb|BX323810.8| Zebrafish DNA sequence from clone CH211-153K16 in linkage group 14,
              complete sequence
          Length = 166625

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 257    aaatgagaatttgaaagattttat 280
              |||||||||||||||| |||||||
Sbjct: 161901 aaatgagaatttgaaatattttat 161878
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 30       ggcggtggcgatggtgccgcaggtggag 57
                ||||| |||||| |||||||||||||||
Sbjct: 19294377 ggcggaggcgatcgtgccgcaggtggag 19294350
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 58       aacctcgccgccggccgcgc 77
                ||||||||||||||||||||
Sbjct: 14534351 aacctcgccgccggccgcgc 14534370
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 58       aacctcgccgccggccgcgc 77
                ||||||||||||||||||||
Sbjct: 20352736 aacctcgccgccggccgcgc 20352755
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 61      ctcgccgccggccgcgcgcg 80
               ||||||||||||||||||||
Sbjct: 7058190 ctcgccgccggccgcgcgcg 7058171
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 58      aacctcgccgccggccgcgc 77
               ||||||||||||||||||||
Sbjct: 7812405 aacctcgccgccggccgcgc 7812386
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 36      ggcgatggtgccgcaggtgg 55
               ||||||||||||||||||||
Sbjct: 6168967 ggcgatggtgccgcaggtgg 6168986
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 24      cggccgggcggtggcgatgg 43
               ||||||||||||||||||||
Sbjct: 5614343 cggccgggcggtggcgatgg 5614324
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 218     cggcgacggccgggtgttcgccga 241
               |||||||| |||||||||||||||
Sbjct: 2859934 cggcgacgaccgggtgttcgccga 2859957
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>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0080E19
          Length = 152755

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    ctcgccgccggccgcgcgcg 80
             ||||||||||||||||||||
Sbjct: 78977 ctcgccgccggccgcgcgcg 78958
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>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0061B07
          Length = 124766

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     ctcgccgccggccgcgcgcg 80
              ||||||||||||||||||||
Sbjct: 117617 ctcgccgccggccgcgcgcg 117598
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>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1077_A12
          Length = 149089

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     aacctcgccgccggccgcgc 77
              ||||||||||||||||||||
Sbjct: 148670 aacctcgccgccggccgcgc 148651
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>dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0052O11
          Length = 106467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    aacctcgccgccggccgcgc 77
             ||||||||||||||||||||
Sbjct: 95347 aacctcgccgccggccgcgc 95366
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>dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0678G09
          Length = 139220

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    aacctcgccgccggccgcgc 77
             ||||||||||||||||||||
Sbjct: 61636 aacctcgccgccggccgcgc 61655
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>dbj|AP005698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0006L10
          Length = 171115

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    aacctcgccgccggccgcgc 77
             ||||||||||||||||||||
Sbjct: 52768 aacctcgccgccggccgcgc 52749
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>gb|AC153903.5| Mus musculus 6 BAC RP23-20C5 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 210370

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   gaaaatgagaatttgaaaga 274
             ||||||||||||||||||||
Sbjct: 85586 gaaaatgagaatttgaaaga 85605
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>dbj|AK101777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064N18, full
           insert sequence
          Length = 1291

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 30  ggcggtggcgatggtgccgcaggtggag 57
           ||||| |||||| |||||||||||||||
Sbjct: 184 ggcggaggcgatcgtgccgcaggtggag 157
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>dbj|AK066631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072F13, full
           insert sequence
          Length = 3311

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 61  ctcgccgccggccgcgcgcg 80
           ||||||||||||||||||||
Sbjct: 115 ctcgccgccggccgcgcgcg 96
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>emb|CR387935.16| Zebrafish DNA sequence from clone CH211-212O1 in linkage group 18,
              complete sequence
          Length = 152685

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 257    aaatgagaatttgaaagattttat 280
              |||||||||||||||| |||||||
Sbjct: 143006 aaatgagaatttgaaatattttat 143029
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 170     catgcggatgtgggaggcga 189
               ||||||||||||||||||||
Sbjct: 2685676 catgcggatgtgggaggcga 2685657
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 58       aacctcgccgccggccgcgc 77
                ||||||||||||||||||||
Sbjct: 14616352 aacctcgccgccggccgcgc 14616371
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>gb|AC161463.3| Gallus gallus BAC clone CH261-127J9 from chromosome ul, complete sequence
          Length = 213261

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     aggctgtgagcgcgctgcag 105
              ||||||||||||||||||||
Sbjct: 132712 aggctgtgagcgcgctgcag 132693
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>emb|BX004800.12| Zebrafish DNA sequence from clone DKEY-18F22, complete sequence
          Length = 269096

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   aaatgagaatttgaaagattttat 280
             |||||||||||||||| |||||||
Sbjct: 47568 aaatgagaatttgaaatattttat 47591
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>gb|AC004562.1|AC004562 Homo sapiens chromosome 17, clone hRPC.34_M_24, complete sequence
          Length = 133925

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   tgaaaatgagaatttgaaag 273
             ||||||||||||||||||||
Sbjct: 56069 tgaaaatgagaatttgaaag 56088
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>gb|AC002539.1|AC002539 Homo sapiens chromosome 17, clone 195o20, complete sequence
          Length = 87246

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   tgaaaatgagaatttgaaag 273
             ||||||||||||||||||||
Sbjct: 12560 tgaaaatgagaatttgaaag 12541
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>dbj|AP006683.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT39I02, TM0377b,
            complete sequence
          Length = 53203

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  aagagtgaaaatgagaattt 268
            ||||||||||||||||||||
Sbjct: 4293 aagagtgaaaatgagaattt 4312
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>emb|AL513356.8| Mouse DNA sequence from clone RP23-193O17 on chromosome X, complete
              sequence
          Length = 216238

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 256    aaaatgagaatttgaaagatttta 279
              |||||||||||||| |||||||||
Sbjct: 164271 aaaatgagaatttggaagatttta 164294


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,201,208
Number of Sequences: 3902068
Number of extensions: 3201208
Number of successful extensions: 75587
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73383
Number of HSP's gapped (non-prelim): 2204
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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