ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast42g05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470253.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1281 Score = 557 bits (281), Expect = e-155 Identities = 409/451 (90%), Gaps = 3/451 (0%) Strand = Plus / Plus Query: 1 ctccagggcggcgccaccacccagttcgccgccgcgccgctcaacctctgcgcctccccc 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 397 ctccagggcggcgccacctcccagttcgccgccgcgccgctcaacctctgcgcctccccc 456 Query: 61 tcggaccccgccgacttcgtcgtctcgggctcctggagcgacaaggccttcaaggaggcc 120 || ||||||||||||||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 457 tccgaccccgccgacttcgtcgtctccgggtcgtggagcgacaaggcgttcaaggaggcc 516 Query: 121 aagaagtactcggccgcctccgtcgcctggtccggcaaggccggcaagtacacctccctc 180 ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 517 aagaagttctccgccgcgtccgtcgcctggtccggcaaggacggcaagtacacctccctc 576 Query: 181 ccggaggacctcggggccctcccgcagaacccggaggcccgcttcctccacatctgctcc 240 || | | ||| ||| || ||||||||| ||||| | |||||||||||||||||| Sbjct: 577 cc---gcccttcgacgccatcgagcagaaccccgaggcaaggttcctccacatctgctcc 633 Query: 241 aacgagaccatccacggcgtcgagttcaaggactaccccgtgccgacgaacaagtccggc 300 |||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||| ||| Sbjct: 634 aacgagaccatccatggcgtcgagttcaaggactacccggagcccaagaacaagtcgggc 693 Query: 301 gtcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcggcgtctcccggttc 360 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 694 atcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcgacgtctcccgcttc 753 Query: 361 ggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgtcgccatc 420 |||||||||||||| || |||||||||||||||||||| || ||||||||| |||||||| Sbjct: 754 ggcctcatctacgccggcgcgcagaagaacgtcggcccctccggcgtcaccatcgccatc 813 Query: 421 gtgcgcaaggacctcgtcggcgccgcgcagc 451 || |||||||||||||||||| |||||||| Sbjct: 814 gtccgcaaggacctcgtcggcagcgcgcagc 844
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 557 bits (281), Expect = e-155 Identities = 409/451 (90%), Gaps = 3/451 (0%) Strand = Plus / Plus Query: 1 ctccagggcggcgccaccacccagttcgccgccgcgccgctcaacctctgcgcctccccc 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 3092862 ctccagggcggcgccacctcccagttcgccgccgcgccgctcaacctctgcgcctccccc 3092921 Query: 61 tcggaccccgccgacttcgtcgtctcgggctcctggagcgacaaggccttcaaggaggcc 120 || ||||||||||||||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 3092922 tccgaccccgccgacttcgtcgtctccgggtcgtggagcgacaaggcgttcaaggaggcc 3092981 Query: 121 aagaagtactcggccgcctccgtcgcctggtccggcaaggccggcaagtacacctccctc 180 ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3092982 aagaagttctccgccgcgtccgtcgcctggtccggcaaggacggcaagtacacctccctc 3093041 Query: 181 ccggaggacctcggggccctcccgcagaacccggaggcccgcttcctccacatctgctcc 240 || | | ||| ||| || ||||||||| ||||| | |||||||||||||||||| Sbjct: 3093042 cc---gcccttcgacgccatcgagcagaaccccgaggcaaggttcctccacatctgctcc 3093098 Query: 241 aacgagaccatccacggcgtcgagttcaaggactaccccgtgccgacgaacaagtccggc 300 |||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||| ||| Sbjct: 3093099 aacgagaccatccatggcgtcgagttcaaggactacccggagcccaagaacaagtcgggc 3093158 Query: 301 gtcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcggcgtctcccggttc 360 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 3093159 atcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcgacgtctcccgcttc 3093218 Query: 361 ggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgtcgccatc 420 |||||||||||||| || |||||||||||||||||||| || ||||||||| |||||||| Sbjct: 3093219 ggcctcatctacgccggcgcgcagaagaacgtcggcccctccggcgtcaccatcgccatc 3093278 Query: 421 gtgcgcaaggacctcgtcggcgccgcgcagc 451 || |||||||||||||||||| |||||||| Sbjct: 3093279 gtccgcaaggacctcgtcggcagcgcgcagc 3093309
>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05, complete sequence Length = 101799 Score = 557 bits (281), Expect = e-155 Identities = 409/451 (90%), Gaps = 3/451 (0%) Strand = Plus / Plus Query: 1 ctccagggcggcgccaccacccagttcgccgccgcgccgctcaacctctgcgcctccccc 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 15875 ctccagggcggcgccacctcccagttcgccgccgcgccgctcaacctctgcgcctccccc 15934 Query: 61 tcggaccccgccgacttcgtcgtctcgggctcctggagcgacaaggccttcaaggaggcc 120 || ||||||||||||||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 15935 tccgaccccgccgacttcgtcgtctccgggtcgtggagcgacaaggcgttcaaggaggcc 15994 Query: 121 aagaagtactcggccgcctccgtcgcctggtccggcaaggccggcaagtacacctccctc 180 ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 15995 aagaagttctccgccgcgtccgtcgcctggtccggcaaggacggcaagtacacctccctc 16054 Query: 181 ccggaggacctcggggccctcccgcagaacccggaggcccgcttcctccacatctgctcc 240 || | | ||| ||| || ||||||||| ||||| | |||||||||||||||||| Sbjct: 16055 cc---gcccttcgacgccatcgagcagaaccccgaggcaaggttcctccacatctgctcc 16111 Query: 241 aacgagaccatccacggcgtcgagttcaaggactaccccgtgccgacgaacaagtccggc 300 |||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||| ||| Sbjct: 16112 aacgagaccatccatggcgtcgagttcaaggactacccggagcccaagaacaagtcgggc 16171 Query: 301 gtcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcggcgtctcccggttc 360 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 16172 atcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcgacgtctcccgcttc 16231 Query: 361 ggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgtcgccatc 420 |||||||||||||| || |||||||||||||||||||| || ||||||||| |||||||| Sbjct: 16232 ggcctcatctacgccggcgcgcagaagaacgtcggcccctccggcgtcaccatcgccatc 16291 Query: 421 gtgcgcaaggacctcgtcggcgccgcgcagc 451 || |||||||||||||||||| |||||||| Sbjct: 16292 gtccgcaaggacctcgtcggcagcgcgcagc 16322
>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0011L14, complete sequence Length = 117974 Score = 557 bits (281), Expect = e-155 Identities = 409/451 (90%), Gaps = 3/451 (0%) Strand = Plus / Minus Query: 1 ctccagggcggcgccaccacccagttcgccgccgcgccgctcaacctctgcgcctccccc 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 3399 ctccagggcggcgccacctcccagttcgccgccgcgccgctcaacctctgcgcctccccc 3340 Query: 61 tcggaccccgccgacttcgtcgtctcgggctcctggagcgacaaggccttcaaggaggcc 120 || ||||||||||||||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 3339 tccgaccccgccgacttcgtcgtctccgggtcgtggagcgacaaggcgttcaaggaggcc 3280 Query: 121 aagaagtactcggccgcctccgtcgcctggtccggcaaggccggcaagtacacctccctc 180 ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3279 aagaagttctccgccgcgtccgtcgcctggtccggcaaggacggcaagtacacctccctc 3220 Query: 181 ccggaggacctcggggccctcccgcagaacccggaggcccgcttcctccacatctgctcc 240 || | | ||| ||| || ||||||||| ||||| | |||||||||||||||||| Sbjct: 3219 cc---gcccttcgacgccatcgagcagaaccccgaggcaaggttcctccacatctgctcc 3163 Query: 241 aacgagaccatccacggcgtcgagttcaaggactaccccgtgccgacgaacaagtccggc 300 |||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||| ||| Sbjct: 3162 aacgagaccatccatggcgtcgagttcaaggactacccggagcccaagaacaagtcgggc 3103 Query: 301 gtcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcggcgtctcccggttc 360 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 3102 atcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcgacgtctcccgcttc 3043 Query: 361 ggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgtcgccatc 420 |||||||||||||| || |||||||||||||||||||| || ||||||||| |||||||| Sbjct: 3042 ggcctcatctacgccggcgcgcagaagaacgtcggcccctccggcgtcaccatcgccatc 2983 Query: 421 gtgcgcaaggacctcgtcggcgccgcgcagc 451 || |||||||||||||||||| |||||||| Sbjct: 2982 gtccgcaaggacctcgtcggcagcgcgcagc 2952
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 557 bits (281), Expect = e-155 Identities = 409/451 (90%), Gaps = 3/451 (0%) Strand = Plus / Plus Query: 1 ctccagggcggcgccaccacccagttcgccgccgcgccgctcaacctctgcgcctccccc 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 3092973 ctccagggcggcgccacctcccagttcgccgccgcgccgctcaacctctgcgcctccccc 3093032 Query: 61 tcggaccccgccgacttcgtcgtctcgggctcctggagcgacaaggccttcaaggaggcc 120 || ||||||||||||||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 3093033 tccgaccccgccgacttcgtcgtctccgggtcgtggagcgacaaggcgttcaaggaggcc 3093092 Query: 121 aagaagtactcggccgcctccgtcgcctggtccggcaaggccggcaagtacacctccctc 180 ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3093093 aagaagttctccgccgcgtccgtcgcctggtccggcaaggacggcaagtacacctccctc 3093152 Query: 181 ccggaggacctcggggccctcccgcagaacccggaggcccgcttcctccacatctgctcc 240 || | | ||| ||| || ||||||||| ||||| | |||||||||||||||||| Sbjct: 3093153 cc---gcccttcgacgccatcgagcagaaccccgaggcaaggttcctccacatctgctcc 3093209 Query: 241 aacgagaccatccacggcgtcgagttcaaggactaccccgtgccgacgaacaagtccggc 300 |||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||| ||| Sbjct: 3093210 aacgagaccatccatggcgtcgagttcaaggactacccggagcccaagaacaagtcgggc 3093269 Query: 301 gtcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcggcgtctcccggttc 360 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 3093270 atcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcgacgtctcccgcttc 3093329 Query: 361 ggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgtcgccatc 420 |||||||||||||| || |||||||||||||||||||| || ||||||||| |||||||| Sbjct: 3093330 ggcctcatctacgccggcgcgcagaagaacgtcggcccctccggcgtcaccatcgccatc 3093389 Query: 421 gtgcgcaaggacctcgtcggcgccgcgcagc 451 || |||||||||||||||||| |||||||| Sbjct: 3093390 gtccgcaaggacctcgtcggcagcgcgcagc 3093420
>dbj|AK122101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125K05, full insert sequence Length = 1584 Score = 557 bits (281), Expect = e-155 Identities = 409/451 (90%), Gaps = 3/451 (0%) Strand = Plus / Plus Query: 1 ctccagggcggcgccaccacccagttcgccgccgcgccgctcaacctctgcgcctccccc 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 ctccagggcggcgccacctcccagttcgccgccgcgccgctcaacctctgcgcctccccc 508 Query: 61 tcggaccccgccgacttcgtcgtctcgggctcctggagcgacaaggccttcaaggaggcc 120 || ||||||||||||||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 509 tccgaccccgccgacttcgtcgtctccgggtcgtggagcgacaaggcgttcaaggaggcc 568 Query: 121 aagaagtactcggccgcctccgtcgcctggtccggcaaggccggcaagtacacctccctc 180 ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 569 aagaagttctccgccgcgtccgtcgcctggtccggcaaggacggcaagtacacctccctc 628 Query: 181 ccggaggacctcggggccctcccgcagaacccggaggcccgcttcctccacatctgctcc 240 || | | ||| ||| || ||||||||| ||||| | |||||||||||||||||| Sbjct: 629 cc---gcccttcgacgccatcgagcagaaccccgaggcaaggttcctccacatctgctcc 685 Query: 241 aacgagaccatccacggcgtcgagttcaaggactaccccgtgccgacgaacaagtccggc 300 |||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||| ||| Sbjct: 686 aacgagaccatccatggcgtcgagttcaaggactacccggagcccaagaacaagtcgggc 745 Query: 301 gtcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcggcgtctcccggttc 360 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 746 atcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcgacgtctcccgcttc 805 Query: 361 ggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgtcgccatc 420 |||||||||||||| || |||||||||||||||||||| || ||||||||| |||||||| Sbjct: 806 ggcctcatctacgccggcgcgcagaagaacgtcggcccctccggcgtcaccatcgccatc 865 Query: 421 gtgcgcaaggacctcgtcggcgccgcgcagc 451 || |||||||||||||||||| |||||||| Sbjct: 866 gtccgcaaggacctcgtcggcagcgcgcagc 896
>dbj|AK120725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002L20, full insert sequence Length = 1661 Score = 557 bits (281), Expect = e-155 Identities = 409/451 (90%), Gaps = 3/451 (0%) Strand = Plus / Plus Query: 1 ctccagggcggcgccaccacccagttcgccgccgcgccgctcaacctctgcgcctccccc 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 463 ctccagggcggcgccacctcccagttcgccgccgcgccgctcaacctctgcgcctccccc 522 Query: 61 tcggaccccgccgacttcgtcgtctcgggctcctggagcgacaaggccttcaaggaggcc 120 || ||||||||||||||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 523 tccgaccccgccgacttcgtcgtctccgggtcgtggagcgacaaggcgttcaaggaggcc 582 Query: 121 aagaagtactcggccgcctccgtcgcctggtccggcaaggccggcaagtacacctccctc 180 ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 583 aagaagttctccgccgcgtccgtcgcctggtccggcaaggacggcaagtacacctccctc 642 Query: 181 ccggaggacctcggggccctcccgcagaacccggaggcccgcttcctccacatctgctcc 240 || | | ||| ||| || ||||||||| ||||| | |||||||||||||||||| Sbjct: 643 cc---gcccttcgacgccatcgagcagaaccccgaggcaaggttcctccacatctgctcc 699 Query: 241 aacgagaccatccacggcgtcgagttcaaggactaccccgtgccgacgaacaagtccggc 300 |||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||| ||| Sbjct: 700 aacgagaccatccatggcgtcgagttcaaggactacccggagcccaagaacaagtcgggc 759 Query: 301 gtcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcggcgtctcccggttc 360 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 760 atcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcgacgtctcccgcttc 819 Query: 361 ggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgtcgccatc 420 |||||||||||||| || |||||||||||||||||||| || ||||||||| |||||||| Sbjct: 820 ggcctcatctacgccggcgcgcagaagaacgtcggcccctccggcgtcaccatcgccatc 879 Query: 421 gtgcgcaaggacctcgtcggcgccgcgcagc 451 || |||||||||||||||||| |||||||| Sbjct: 880 gtccgcaaggacctcgtcggcagcgcgcagc 910
>dbj|AK109385.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A07, full insert sequence Length = 1579 Score = 549 bits (277), Expect = e-153 Identities = 408/451 (90%), Gaps = 3/451 (0%) Strand = Plus / Plus Query: 1 ctccagggcggcgccaccacccagttcgccgccgcgccgctcaacctctgcgcctccccc 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 ctccagggcggcgccacctcccagttcgccgccgcgccgctcaacctctgcgcctccccc 506 Query: 61 tcggaccccgccgacttcgtcgtctcgggctcctggagcgacaaggccttcaaggaggcc 120 || ||||||||||||||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 507 tccgaccccgccgacttcgtcgtctccgggtcgtggagcgacaaggcgttcaaggaggcc 566 Query: 121 aagaagtactcggccgcctccgtcgcctggtccggcaaggccggcaagtacacctccctc 180 ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 567 aagaagttctccgccgcgtccgtcgcctggtccggcaaggacggcaagtacacctccctc 626 Query: 181 ccggaggacctcggggccctcccgcagaacccggaggcccgcttcctccacatctgctcc 240 || | | ||| ||| || ||||||||| ||||| | ||| |||||||||||||| Sbjct: 627 cc---gcccttcgacgccatcgagcagaaccccgaggcaaggttcttccacatctgctcc 683 Query: 241 aacgagaccatccacggcgtcgagttcaaggactaccccgtgccgacgaacaagtccggc 300 |||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||| ||| Sbjct: 684 aacgagaccatccatggcgtcgagttcaaggactacccggagcccaagaacaagtcgggc 743 Query: 301 gtcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcggcgtctcccggttc 360 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 744 atcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcgacgtctcccgcttc 803 Query: 361 ggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgtcgccatc 420 |||||||||||||| || |||||||||||||||||||| || ||||||||| |||||||| Sbjct: 804 ggcctcatctacgccggcgcgcagaagaacgtcggcccctccggcgtcaccatcgccatc 863 Query: 421 gtgcgcaaggacctcgtcggcgccgcgcagc 451 || |||||||||||||||||| |||||||| Sbjct: 864 gtccgcaaggacctcgtcggcagcgcgcagc 894
>dbj|AK060677.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-B10, full insert sequence Length = 1645 Score = 549 bits (277), Expect = e-153 Identities = 409/451 (90%), Gaps = 4/451 (0%) Strand = Plus / Plus Query: 1 ctccagggcggcgccaccacccagttcgccgccgcgccgctcaacctctgcgcctccccc 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 ctccagggcggcgccacctcccagttcgccgccgcgccgctcaacctctgcgcctccccc 507 Query: 61 tcggaccccgccgacttcgtcgtctcgggctcctggagcgacaaggccttcaaggaggcc 120 || ||||||||||||||||||||||| || || |||||||||||||| |||||||||||| Sbjct: 508 tccgaccccgccgacttcgtcgtctccgggtcgtggagcgacaaggcgttcaaggaggcc 567 Query: 121 aagaagtactcggccgcctccgtcgcctggtccggcaaggccggcaagtacacctccctc 180 ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 568 aagaagttctccgccgcgtccgtcgcctggtccggcaaggacggcaagtacacctccctc 627 Query: 181 ccggaggacctcggggccctcccgcagaacccggaggcccgcttcctccacatctgctcc 240 || | | ||| ||| || ||||||||| ||||| | |||||||||||||||||| Sbjct: 628 cc---gcccttcgacgccatcgagcagaaccccgaggcaaggttcctccacatctgctcc 684 Query: 241 aacgagaccatccacggcgtcgagttcaaggactaccccgtgccgacgaacaagtccggc 300 |||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||| ||| Sbjct: 685 aacgagaccatccatggcgtcgagttcaaggactacccggagcccaagaacaagtcgggc 744 Query: 301 gtcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcggcgtctcccggttc 360 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 745 atcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcgacgtctcccgcttc 804 Query: 361 ggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgtcgccatc 420 |||||||||||||| || |||||||||||||||||||| || ||||||||| |||||||| Sbjct: 805 ggcctcatctacgccggcgcgcagaagaacgtcggccc-tccggcgtcaccatcgccatc 863 Query: 421 gtgcgcaaggacctcgtcggcgccgcgcagc 451 || |||||||||||||||||| |||||||| Sbjct: 864 gtccgcaaggacctcgtcggcagcgcgcagc 894
>gb|AY107010.1| Zea mays PCO108790 mRNA sequence Length = 1489 Score = 446 bits (225), Expect = e-122 Identities = 395/451 (87%), Gaps = 3/451 (0%) Strand = Plus / Plus Query: 1 ctccagggcggcgccaccacccagttcgccgccgcgccgctcaacctctgcgcctccccc 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||| | ||| Sbjct: 156 ctccagggcggcgccaccacgcagttcgccgccgtcccgctcaacctctgcacggggccc 215 Query: 61 tcggaccccgccgacttcgtcgtctcgggctcctggagcgacaaggccttcaaggaggcc 120 || ||||| |||||||||||||| || || |||||||||||||||||||||||||||||| Sbjct: 216 tccgacccggccgacttcgtcgtgtccggatcctggagcgacaaggccttcaaggaggcc 275 Query: 121 aagaagtactcggccgcctccgtcgcctggtccggcaaggccggcaagtacacctccctc 180 ||||||| ||| |||||||||||||||||||| || || | |||||||||||| ||||| Sbjct: 276 aagaagttctccgccgcctccgtcgcctggtcgggtaaagacggcaagtacacggccctc 335 Query: 181 ccggaggacctcggggccctcccgcagaacccggaggcccgcttcctccacatctgctcc 240 ||| | ||| ||| || | |||||||| |||||| | |||||||||||||||||| Sbjct: 336 ccgccgt---tcgacgccatcgcccagaaccccgaggccaggttcctccacatctgctcc 392 Query: 241 aacgagaccatccacggcgtcgagttcaaggactaccccgtgccgacgaacaagtccggc 300 |||||||||||||||||||||||||||||||||||||| | ||| |||| ||| ||| Sbjct: 393 aacgagaccatccacggcgtcgagttcaaggactacccggagccccgcaacaggtcgggc 452 Query: 301 gtcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcggcgtctcccggttc 360 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 453 atcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcgacgtctcccgcttc 512 Query: 361 ggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgtcgccatc 420 ||| |||||||||| || || |||||||||||||| || || ||||||||| |||||||| Sbjct: 513 ggcgtcatctacgccggcgcacagaagaacgtcgggccctccggcgtcaccatcgccatc 572 Query: 421 gtgcgcaaggacctcgtcggcgccgcgcagc 451 ||||||||||||||| |||||||||| |||| Sbjct: 573 gtgcgcaaggacctcatcggcgccgctcagc 603
>gb|BT018094.1| Zea mays clone EL01N0552F04.c mRNA sequence Length = 1152 Score = 317 bits (160), Expect = 2e-83 Identities = 294/338 (86%), Gaps = 3/338 (0%) Strand = Plus / Plus Query: 114 ggaggccaagaagtactcggccgcctccgtcgcctggtccggcaaggccggcaagtacac 173 |||||||||||||| ||| |||||||||||||||||||| || || | |||||||||||| Sbjct: 9 ggaggccaagaagttctccgccgcctccgtcgcctggtcgggtaaagacggcaagtacac 68 Query: 174 ctccctcccggaggacctcggggccctcccgcagaacccggaggcccgcttcctccacat 233 |||||||| | ||| ||| || | |||||||| |||||| | ||||||||||| Sbjct: 69 ggccctcccgccgt---tcgacgccatcgcccagaaccccgaggccaggttcctccacat 125 Query: 234 ctgctccaacgagaccatccacggcgtcgagttcaaggactaccccgtgccgacgaacaa 293 ||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||| Sbjct: 126 ctgctccaacgagaccatccacggcgtggagttcaaggactacccggagccccgcaacag 185 Query: 294 gtccggcgtcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcggcgtctc 353 ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 186 gtcgggcatcctcgtcgccgacatgtcctccaacttctgctccaagcccgtcgacgtctc 245 Query: 354 ccggttcggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgt 413 ||| |||||| |||||||||| || || |||||||||||||| || || ||||||||| | Sbjct: 246 ccgcttcggcgtcatctacgccggcgcacagaagaacgtcgggccctccggcgtcaccat 305 Query: 414 cgccatcgtgcgcaaggacctcgtcggcgccgcgcagc 451 |||||||||||||||||||||| |||||||||| |||| Sbjct: 306 cgccatcgtgcgcaaggacctcatcggcgccgctcagc 343
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 364 ctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgtcgccatcgtg 423 |||||||| || ||||| |||||||||||||| ||| ||||||||||||||| | ||||| Sbjct: 2738337 ctcatctatgccggggcccagaagaacgtcgggccggcgggcgtcaccgtcgtcctcgtg 2738278 Query: 424 c 424 | Sbjct: 2738277 c 2738277
>gb|AY596504.1| Helicosporidium sp. ex Simulium jonesii plastid phosphoserine aminotransferase mRNA, partial cds; nuclear gene for plastid product Length = 625 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 358 ttcggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgtcgcc 417 ||||| ||||||||||| || |||||||| ||||| |||||| | ||| |||||||| | Sbjct: 513 ttcgggctcatctacgccggcgcgcagaaaaacgtgggcccggccggcaccaccgtcgtc 572 Query: 418 atcgtgcgcaaggac 432 |||||||| |||||| Sbjct: 573 atcgtgcgaaaggac 587
>gb|AY659068.1| Synthetic construct Peudomonas aeruginosa clone FLH038032.01F PA3167 gene, partial cds Length = 1086 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 352 tcccggttcggcctcatctacgcgggggcgcagaagaacgtcggcccgtc 401 ||||| |||||||| ||||| || ||||||||||||||| |||||||||| Sbjct: 556 tcccgcttcggcctgatctatgccggggcgcagaagaacatcggcccgtc 605
>gb|AE004740.1| Pseudomonas aeruginosa PAO1, section 301 of 529 of the complete genome Length = 10965 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 352 tcccggttcggcctcatctacgcgggggcgcagaagaacgtcggcccgtc 401 ||||| |||||||| ||||| || ||||||||||||||| |||||||||| Sbjct: 10337 tcccgcttcggcctgatctatgccggggcgcagaagaacatcggcccgtc 10288
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 2 tccagggcggcgccaccacccagttcgccgccgcgccgctcaacctctgcgc 53 ||||||||||||||||| | ||||| ||||||| | |||||||||| ||||| Sbjct: 25872298 tccagggcggcgccacctcacagttagccgccgtgtcgctcaacctatgcgc 25872349
>dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1339_F05 Length = 132708 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 2 tccagggcggcgccaccacccagttcgccgccgcgccgctcaacctctgcgc 53 ||||||||||||||||| | ||||| ||||||| | |||||||||| ||||| Sbjct: 42746 tccagggcggcgccacctcacagttagccgccgtgtcgctcaacctatgcgc 42797
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 355 cggttcggcctcatctacgcgggggcgcagaagaacgtcggcccgtcggg 404 |||||||| ||||||||||||| |||||||||||| |||| ||| |||| Sbjct: 2438279 cggttcgggatcatctacgcgggagcgcagaagaacatcgggccggcggg 2438230
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 358 ttcggcctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgt 407 ||||| ||| |||||||||| |||||||||||| |||| || |||||||| Sbjct: 2968724 ttcgggctcgtctacgcgggcgcgcagaagaacatcgggccctcgggcgt 2968675 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 237 ctccaacgagaccatccacggcgt 260 |||||||||||||||||||||||| Sbjct: 2968854 ctccaacgagaccatccacggcgt 2968831
>gb|AC152421.8| Medicago truncatula clone mth2-7h20, complete sequence Length = 127540 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 7 ggcggcgccaccacccagttcgc 29 ||||||||||||||||||||||| Sbjct: 106158 ggcggcgccaccacccagttcgc 106180
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 46.1 bits (23), Expect = 0.098 Identities = 26/27 (96%) Strand = Plus / Minus Query: 4 cagggcggcgccaccacccagttcgcc 30 ||||||||||||||| ||||||||||| Sbjct: 1506900 cagggcggcgccaccgcccagttcgcc 1506874
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 46.1 bits (23), Expect = 0.098 Identities = 41/47 (87%) Strand = Plus / Plus Query: 358 ttcggcctcatctacgcgggggcgcagaagaacgtcggcccgtcggg 404 |||||| | ||||| || || |||||||||||| ||||||||||||| Sbjct: 2489594 ttcggcatgatctatgccggcgcgcagaagaacatcggcccgtcggg 2489640
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 44.1 bits (22), Expect = 0.39 Identities = 34/38 (89%) Strand = Plus / Minus Query: 361 ggcctcatctacgcgggggcgcagaagaacgtcggccc 398 ||||||||||| || || |||||||||||| ||||||| Sbjct: 1804591 ggcctcatctatgctggcgcgcagaagaacatcggccc 1804554
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 239 ccaacgagaccatccacggcgt 260 |||||||||||||||||||||| Sbjct: 1855433 ccaacgagaccatccacggcgt 1855412
>ref|XM_969378.1| PREDICTED: Tribolium castaneum similar to CG11899-PA (LOC663325), mRNA Length = 1219 Score = 44.1 bits (22), Expect = 0.39 Identities = 37/42 (88%) Strand = Plus / Plus Query: 372 cgcgggggcgcagaagaacgtcggcccgtcgggcgtcaccgt 413 ||||||||||||||||||| | || ||| |||| |||||||| Sbjct: 616 cgcgggggcgcagaagaacattgggccggcgggagtcaccgt 657
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 239 ccaacgagaccatccacggcgtcgag 264 |||||||||| ||||||||||||||| Sbjct: 538792 ccaacgagacgatccacggcgtcgag 538767
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 269 aggactaccccgtgccgacgaacaag 294 ||||||||||||||| |||||||||| Sbjct: 26250466 aggactaccccgtgcggacgaacaag 26250491 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 cgcctccccctcggaccccg 70 |||||||||||||||||||| Sbjct: 28915456 cgcctccccctcggaccccg 28915437
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 428 aggacctcgtcggcgccgcgca 449 |||||||||||||||||||||| Sbjct: 1648942 aggacctcgtcggcgccgcgca 1648921
>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0453H04 Length = 175047 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 269 aggactaccccgtgccgacgaacaag 294 ||||||||||||||| |||||||||| Sbjct: 115006 aggactaccccgtgcggacgaacaag 115031
>gb|AF239615.1|AF239615 Manihot esculenta CRANTZ hydroxyproline-rich glycoprotein mRNA, complete cds Length = 1609 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 1 ctccagggcggcgccaccacccagttcgcc 30 |||||||||||||| ||||| ||||||||| Sbjct: 241 ctccagggcggcgcaaccacgcagttcgcc 212
>dbj|AK066545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069A19, full insert sequence Length = 2291 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 269 aggactaccccgtgccgacgaacaag 294 ||||||||||||||| |||||||||| Sbjct: 1531 aggactaccccgtgcggacgaacaag 1556
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 44.1 bits (22), Expect = 0.39 Identities = 37/42 (88%) Strand = Plus / Plus Query: 357 gttcggcctcatctacgcgggggcgcagaagaacgtcggccc 398 ||||||||| |||||||| || ||||||||||| ||||||| Sbjct: 1974548 gttcggcctgatctacgccggcgcgcagaagaatatcggccc 1974589
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 251 tccacggcgtcgagttcaaggacta 275 |||||||||||||| |||||||||| Sbjct: 1046236 tccacggcgtcgaggtcaaggacta 1046212
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 cctccccctcggaccccgccg 73 ||||||||||||||||||||| Sbjct: 231606 cctccccctcggaccccgccg 231586
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 350 tctcccggttcggcctcatctacgcgggggcgcagaagaacgtcggccc 398 ||||||| |||||| | |||||||| || ||||||||||| ||||||| Sbjct: 5014564 tctcccgtttcggcatgatctacgctggcgcgcagaagaatatcggccc 5014516
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 367 atctacgcgggggcgcagaagaacgtcggcccg 399 |||||||| || |||||||||||| |||||||| Sbjct: 1011688 atctacgccggcgcgcagaagaacatcggcccg 1011720
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 gtccggcgtcctcgtcgccga 314 ||||||||||||||||||||| Sbjct: 3590195 gtccggcgtcctcgtcgccga 3590175 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 ccggcgtcctcgtcgccgac 315 |||||||||||||||||||| Sbjct: 4774025 ccggcgtcctcgtcgccgac 4774044 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 acacctccctcccggaggac 189 |||||||||||||||||||| Sbjct: 4108169 acacctccctcccggaggac 4108150 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctccagggcggcgccaccacccag 24 |||||||||||| ||||||||||| Sbjct: 2803814 ctccagggcggccccaccacccag 2803837
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 294 gtccggcgtcctcgtcgccga 314 ||||||||||||||||||||| Sbjct: 47610 gtccggcgtcctcgtcgccga 47630
>ref|NM_129901.2| Arabidopsis thaliana catalytic/ electron acceptor/ electron-transferring-flavoprotein dehydrogenase/ oxidoreductase AT2G43400 mRNA, complete cds Length = 2108 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgtcctccaacttctgctcc 336 |||||||||||||||||||| Sbjct: 480 tgtcctccaacttctgctcc 461
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 gcagaagaacgtcggcccgt 400 |||||||||||||||||||| Sbjct: 1163045 gcagaagaacgtcggcccgt 1163064
>ref|XM_450572.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2073 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 acggcgtcgagttcaaggactacc 277 ||||||||||||||||||| |||| Sbjct: 1322 acggcgtcgagttcaaggagtacc 1345
>ref|XM_472220.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2253 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 gcgtcctcgtcgccgacatg 318 |||||||||||||||||||| Sbjct: 317 gcgtcctcgtcgccgacatg 336
>gb|AC005608.1| Homo sapiens chromosome 5, PAC clone 53L17 (LBNL H152), complete sequence Length = 119298 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 aaggaggccaagaagtactc 131 |||||||||||||||||||| Sbjct: 88967 aaggaggccaagaagtactc 88948
>gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052O08 map MAP_LOC, complete sequence Length = 154839 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 ccggttcggcctcatctacg 373 |||||||||||||||||||| Sbjct: 44931 ccggttcggcctcatctacg 44950
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tcaaggaggccaagaagtac 129 |||||||||||||||||||| Sbjct: 1833256 tcaaggaggccaagaagtac 1833275
>emb|BX664608.6| Human DNA sequence from clone RP11-1082I11 on chromosome 9 Contains an S-phase kinase-associated protein 1A (p19A) (SKP1A) pseudogene, a novel protein and two CpG islands, complete sequence Length = 168113 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gacaaggccttcaaggaggc 119 |||||||||||||||||||| Sbjct: 157625 gacaaggccttcaaggaggc 157606
>emb|BX248098.7| Human DNA sequence from clone CTD-2173L22 on chromosome 9 Contains a novel gene, a zinc finger protein pseudogene, a S-phase kinase-associated protein 1A (p19A) (SKP1A) pseudogene and two CpG islands, complete sequence Length = 119184 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gacaaggccttcaaggaggc 119 |||||||||||||||||||| Sbjct: 93164 gacaaggccttcaaggaggc 93145
>emb|AL954139.7| Human DNA sequence from clone RP11-100J16 on chromosome 9 Contains a novel gene, a novel zinc finger pseudogene, S-phase kinase-associated protein 1A (SKP1A) pseudogene, a pseudogene similar to part of 6-pyruvoyltetrahydropterin synthase (PTS) and a CpG island, complete sequence Length = 159990 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gacaaggccttcaaggaggc 119 |||||||||||||||||||| Sbjct: 101292 gacaaggccttcaaggaggc 101311
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cgccgccgcgccgctcaacc 46 |||||||||||||||||||| Sbjct: 4156242 cgccgccgcgccgctcaacc 4156261 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 aacgagaccatccacggcgtcgag 264 |||||||| ||||||||||||||| Sbjct: 3808297 aacgagacgatccacggcgtcgag 3808274
>emb|AL353770.18| Human DNA sequence from clone RP11-395E19 on chromosome 9 Contains a novel pseudogene, the gene for a novel protein similar to chromosome 9 open reading frame 36 (C9orf36), a 6-pyruvoyltetrahydropterin synthase (PTS-P1) pseudogene and three novel genes, complete sequence Length = 130898 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gacaaggccttcaaggaggc 119 |||||||||||||||||||| Sbjct: 1857 gacaaggccttcaaggaggc 1838
>gb|BT000373.1| Arabidopsis thaliana biotin synthase Bio B (At2g43400) mRNA, complete cds Length = 2192 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgtcctccaacttctgctcc 336 |||||||||||||||||||| Sbjct: 428 tgtcctccaacttctgctcc 409
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 cctcgtcggcgccgcgcagc 451 |||||||||||||||||||| Sbjct: 139919 cctcgtcggcgccgcgcagc 139900
>emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01, complete sequence Length = 148353 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 gcgtcctcgtcgccgacatg 318 |||||||||||||||||||| Sbjct: 112362 gcgtcctcgtcgccgacatg 112381
>emb|BX664609.6| Human DNA sequence from clone RP11-111O3 on chromosome 9 Contains a S-phase kinase-associated protein 1A (p19A) (SKP1A) pseudogene and a pseduogene similar to part of a novel protein, complete sequence Length = 157893 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gacaaggccttcaaggaggc 119 |||||||||||||||||||| Sbjct: 150891 gacaaggccttcaaggaggc 150872
>gb|AF521878.1| Streptomyces narbonensis desosamine biosynthetic gene cluster, partial sequence Length = 17665 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccggcgtcctcgtcgccgac 315 |||||||||||||||||||| Sbjct: 12700 ccggcgtcctcgtcgccgac 12681
>gb|AY120745.1| Arabidopsis thaliana biotin synthase Bio B (At2g43400) mRNA, complete cds Length = 2341 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgtcctccaacttctgctcc 336 |||||||||||||||||||| Sbjct: 466 tgtcctccaacttctgctcc 447
>gb|DQ397556.1| Cenarchaeum symbiosum clone C13A10, complete sequence Length = 40870 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ggacctcgtcggcgccgcgc 448 |||||||||||||||||||| Sbjct: 15985 ggacctcgtcggcgccgcgc 16004
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 acccagttcgccgccgcgcc 38 |||||||||||||||||||| Sbjct: 4383903 acccagttcgccgccgcgcc 4383884
>dbj|AK021885.1| Homo sapiens cDNA FLJ11823 fis, clone HEMBA1006486 Length = 1394 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gacaaggccttcaaggaggc 119 |||||||||||||||||||| Sbjct: 715 gacaaggccttcaaggaggc 696
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ggacctcgtcggcgccgcgc 448 |||||||||||||||||||| Sbjct: 3150970 ggacctcgtcggcgccgcgc 3150989
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 229 cacatctgctccaacgagaccatccacggcgt 260 ||||||||| |||||||||||| |||||||| Sbjct: 1697506 cacatctgcagcaacgagaccattcacggcgt 1697475
>gb|AC109448.3| Homo sapiens chromosome 5 clone RP11-141G2, complete sequence Length = 163817 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 aaggaggccaagaagtactc 131 |||||||||||||||||||| Sbjct: 87886 aaggaggccaagaagtactc 87867
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 gcgtcctcgtcgccgacatg 318 |||||||||||||||||||| Sbjct: 18531735 gcgtcctcgtcgccgacatg 18531754
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 ccggttcggcctcatctacg 373 |||||||||||||||||||| Sbjct: 4263421 ccggttcggcctcatctacg 4263440
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 acggcgtcgagttcaaggactacc 277 ||||||||||||||||||| |||| Sbjct: 9730050 acggcgtcgagttcaaggagtacc 9730073
>emb|BX819708.1|CNS0AA07 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS19ZF01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2071 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgtcctccaacttctgctcc 336 |||||||||||||||||||| Sbjct: 448 tgtcctccaacttctgctcc 429
>gb|AF549895.1| Xenopus laevis clone S10-47-B11 mRNA sequence Length = 6885 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 atgtcctccaacttctgctccaag 339 |||||||||||||||||| ||||| Sbjct: 3945 atgtcctccaacttctgccccaag 3922 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 atgtcctccaacttctgctccaag 339 |||||||||||||||||| ||||| Sbjct: 494 atgtcctccaacttctgccccaag 471
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 6.1 Identities = 41/48 (85%) Strand = Plus / Plus Query: 363 cctcatctacgcgggggcgcagaagaacgtcggcccgtcgggcgtcac 410 |||||| ||||| ||||||||||| || |||||||||| || ||||| Sbjct: 670270 cctcatttacgccggggcgcagaaaaatctcggcccgtcaggagtcac 670317
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cgagaccatccacggcgtcg 262 |||||||||||||||||||| Sbjct: 8363070 cgagaccatccacggcgtcg 8363089 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 gacctcgtcggcgccgcgca 449 |||||||||||||||||||| Sbjct: 8009675 gacctcgtcggcgccgcgca 8009656
>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468G03 Length = 143918 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 cgcctccccctcggaccccg 70 |||||||||||||||||||| Sbjct: 65500 cgcctccccctcggaccccg 65481
>dbj|AP005863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0040N23 Length = 101061 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 acggcgtcgagttcaaggactacc 277 ||||||||||||||||||| |||| Sbjct: 2469 acggcgtcgagttcaaggagtacc 2492
>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0706E03 Length = 188028 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 acggcgtcgagttcaaggactacc 277 ||||||||||||||||||| |||| Sbjct: 170147 acggcgtcgagttcaaggagtacc 170170
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 gcgtctcccggttcggcctc 366 |||||||||||||||||||| Sbjct: 347051 gcgtctcccggttcggcctc 347070
>dbj|AK065694.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035D10, full insert sequence Length = 2751 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 gcgtcctcgtcgccgacatg 318 |||||||||||||||||||| Sbjct: 420 gcgtcctcgtcgccgacatg 439
>gb|AF079762.1|AF079762 Streptomyces venezuelae desosamine biosynthetic gene cluster, complete sequence Length = 12441 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccggcgtcctcgtcgccgac 315 |||||||||||||||||||| Sbjct: 11355 ccggcgtcctcgtcgccgac 11336
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 cctcgtcggcgccgcgcagc 451 |||||||||||||||||||| Sbjct: 2540002 cctcgtcggcgccgcgcagc 2539983
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 ccggttcggcctcatctacg 373 |||||||||||||||||||| Sbjct: 4272115 ccggttcggcctcatctacg 4272134
>gb|AY048670.1| Streptomyces globisporus enediyne antitumor antibiotic C-1027 biosynthetic gene cluster, complete sequence Length = 85163 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cgccgccgcgccgctcaacc 46 |||||||||||||||||||| Sbjct: 82578 cgccgccgcgccgctcaacc 82597 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,880,376 Number of Sequences: 3902068 Number of extensions: 2880376 Number of successful extensions: 79844 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76487 Number of HSP's gapped (non-prelim): 3353 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
