>PSD13_CHICK (P84169) 26S proteasome non-ATPase regulatory subunit 13 (26S|
           proteasome regulatory subunit S11) (26S proteasome
           regulatory subunit p40.5)
          Length = 376

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 29/81 (35%), Positives = 44/81 (54%)
 Frame = +3

Query: 204 YVEAQRQARPXXXXXXXXXXXXXQRKLWHQLTLKLDQFLQIPAAQTGDTLIQLYNNFISD 383
           +++  + A P              +KLWHQLTL++  F+Q P    GD LI+LY NFIS+
Sbjct: 7   FLQQSQSAGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISE 66

Query: 384 FETKINLLKLAQFAVIASRHI 446
           FE ++N L L +  +   R +
Sbjct: 67  FEHRVNPLSLVEIILHVVRQM 87

>PSD13_MOUSE (Q9WVJ2) 26S proteasome non-ATPase regulatory subunit 13 (26S|
           proteasome regulatory subunit S11) (26S proteasome
           regulatory subunit p40.5)
          Length = 376

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 27/57 (47%), Positives = 38/57 (66%)
 Frame = +3

Query: 276 RKLWHQLTLKLDQFLQIPAAQTGDTLIQLYNNFISDFETKINLLKLAQFAVIASRHI 446
           +KLWHQLTL++  F+Q P    GD LI+LY NFIS+FE ++N L L +  +   R +
Sbjct: 31  KKLWHQLTLEVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQM 87

>PSD13_HUMAN (Q9UNM6) 26S proteasome non-ATPase regulatory subunit 13 (26S|
           proteasome regulatory subunit S11) (26S proteasome
           regulatory subunit p40.5)
          Length = 376

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 27/57 (47%), Positives = 38/57 (66%)
 Frame = +3

Query: 276 RKLWHQLTLKLDQFLQIPAAQTGDTLIQLYNNFISDFETKINLLKLAQFAVIASRHI 446
           +KLWHQLTL++  F+Q P    GD LI+LY NFIS+FE ++N L L +  +   R +
Sbjct: 31  KKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQM 87

>PSD13_BOVIN (Q5E964) 26S proteasome non-ATPase regulatory subunit 13 (26S|
           proteasome regulatory subunit S11) (26S proteasome
           regulatory subunit p40.5)
          Length = 376

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 27/57 (47%), Positives = 38/57 (66%)
 Frame = +3

Query: 276 RKLWHQLTLKLDQFLQIPAAQTGDTLIQLYNNFISDFETKINLLKLAQFAVIASRHI 446
           +KLWHQLTL++  F+Q P    GD LI+LY NFIS+FE ++N L L +  +   R +
Sbjct: 31  KKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQM 87

>RPN9_SCHPO (Q9US13) Probable 26S proteasome regulatory subunit rpn9|
          Length = 381

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = +3

Query: 273 QRKLWHQLTLKLDQFLQIPAAQTGDTLIQLYNNFISDFETKINLLK 410
           +RKLW QLT  L  F   P  +T    + LY NF++ F   IN LK
Sbjct: 36  ERKLWKQLTDALIVFFDTP--ETVPLRLPLYTNFVNSFRPNINQLK 79

>RPN9_YEAST (Q04062) 26S proteasome regulatory subunit RPN9 (Proteasome|
           non-ATPase subunit 7)
          Length = 393

 Score = 35.8 bits (81), Expect = 0.053
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +3

Query: 273 QRKLWHQLTLKLDQFLQIPAAQTGDTLIQLYNNFISDFETKINLLKLAQF 422
           + KLW QL+  L +F     A++    ++LY+NF+S F  KIN L + ++
Sbjct: 34  EEKLWFQLSESLTKFFD--DAKSTPLRLRLYDNFVSKFYDKINQLSVVKY 81

>PEP_DROME (P41073) Zinc finger protein on ecdysone puffs|
          Length = 716

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 141 GFGEGEGDDHRQLEREAMRRGEEDGSKTLVSDDINE 34
           G G+GEG +  + E E  + GEE   +T   D++NE
Sbjct: 400 GAGDGEGAEGDEAEGEEAKEGEEAADETKEGDELNE 435

>ARLY_WOLSU (Q7M938) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 462

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 452 CQDMARGYDRELGEFEQVDFRFEIGDE 372
           C+++  G ++ LGE E+ +F F+I DE
Sbjct: 56  CEEILAGLEKVLGEIERGEFVFKIADE 82

>GLPK2_STRCO (Q9RJM2) Glycerol kinase 2 (EC 2.7.1.30) (ATP:glycerol|
           3-phosphotransferase 2) (Glycerokinase 2) (GK 2)
          Length = 507

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 334 AAGIWRNWSSLRVSWCQSLRW 272
           A G WR+   LR  W +S RW
Sbjct: 455 ATGFWRHTDELRTHWSESRRW 475

>ACHA6_CHICK (P49581) Neuronal acetylcholine receptor protein, alpha-6 subunit|
           precursor
          Length = 494

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +3

Query: 276 RKLWHQLTLKLD-------QFLQIPAAQTGDTLIQLYNNFISDFETK 395
           R +W+   L+ D       +F+++PA +     I LYNN + DF+ +
Sbjct: 87  RHIWNDYKLRRDPREYDGIEFVRVPADKIWKPDIVLYNNAVGDFQVE 133

>YABN_ECOLI (P33595) Hypothetical protein yabN|
          Length = 551

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 397 IFVSKSEMKLL*SCMSVSPVCAAGIWRNWSSLRVSWCQSL 278
           +F    E+ LL  C+ +     A  WRN      +WCQ L
Sbjct: 467 VFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQL 506


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,158,973
Number of Sequences: 219361
Number of extensions: 586596
Number of successful extensions: 2068
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2068
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)