ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast42f12 |
|---|---|
| Clone Library Name | barley_pub |
>RECA_MANSM (Q65QB0) Protein recA (Recombinase A)| Length = 351 Score = 31.2 bits (69), Expect = 1.1 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -1 Query: 337 GALSRLWLATALVIESIATGSRRLDVAVPIG 245 GA+ +L AL +ESI+TGS LDVA+ IG Sbjct: 25 GAIMKLGDTQALDVESISTGSIGLDVALGIG 55
>RECA_SPIME (Q54428) Protein recA (Recombinase A) (Fragment)| Length = 77 Score = 30.4 bits (67), Expect = 1.9 Identities = 16/52 (30%), Positives = 30/52 (57%) Frame = -1 Query: 400 PIFPVQLFTSIGKESLRGADAGALSRLWLATALVIESIATGSRRLDVAVPIG 245 P+ ++ ++ KE + GA+ +L + L IE+++TGS LD A+ +G Sbjct: 13 PLDQDEILKTVMKEIEKTYGKGAIMKLGDKSNLTIEAVSTGSLLLDEAIGVG 64
>RECA_FUSNN (Q8RFY0) Protein recA (Recombinase A)| Length = 378 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/36 (38%), Positives = 24/36 (66%) Frame = -1 Query: 352 RGADAGALSRLWLATALVIESIATGSRRLDVAVPIG 245 +G +G + +L +++ +ESI TGS LD+A+ IG Sbjct: 33 KGFGSGLIMKLGEKSSMNVESIPTGSINLDIALGIG 68
>MAML1_MOUSE (Q6T264) Mastermind-like protein 1 (Mam-1)| Length = 1020 Score = 29.6 bits (65), Expect = 3.2 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Frame = +3 Query: 147 PKRTEMLSAAFAVHPATVAPRRHSVRLRQQFCAPIGTATSRRRLPVAMLSITNA------ 308 P + S +V+P T AP H + + + R P+A LS A Sbjct: 850 PNLSSQTSGNSSVNPFTAAPSFHIQQAHLKLAGQQFSQAMPSR-PMAPLSSAGAAGPMLP 908 Query: 309 -VASQSRESAPASAP 350 V++Q R SAPASAP Sbjct: 909 PVSAQQRNSAPASAP 923
>RECA_AERSA (P94190) Protein recA (Recombinase A)| Length = 353 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = -1 Query: 337 GALSRLWLATALVIESIATGSRRLDVAVPIGAQNCWR 227 G++ L + + IE+I+TGS LDVA+ IG C R Sbjct: 23 GSIMLLGDSKTMDIEAISTGSLSLDVALGIGGLPCGR 59
>RECA_PASMU (P95526) Protein recA (Recombinase A)| Length = 354 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/31 (45%), Positives = 22/31 (70%) Frame = -1 Query: 337 GALSRLWLATALVIESIATGSRRLDVAVPIG 245 G++ +L AL +E+++TGS LDVA+ IG Sbjct: 25 GSIMKLGDTQALDVEAVSTGSLSLDVALGIG 55
>RECA_HAEIN (P43705) Protein recA (Recombinase A) (Recombinase 1)| Length = 354 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = -1 Query: 337 GALSRLWLATALVIESIATGSRRLDVAVPIG 245 G++ +L L +ESI+TGS LDVA+ IG Sbjct: 25 GSIMKLGDTKTLDVESISTGSLGLDVALGIG 55
>RECA_HAEI8 (Q4QMV2) Protein recA (Recombinase A)| Length = 354 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = -1 Query: 337 GALSRLWLATALVIESIATGSRRLDVAVPIG 245 G++ +L L +ESI+TGS LDVA+ IG Sbjct: 25 GSIMKLGDTKTLDVESISTGSLGLDVALGIG 55
>UBIE_PSESM (Q87UZ2) Ubiquinone/menaquinone biosynthesis methyltransferase ubiE| (EC 2.1.1.-) Length = 256 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -1 Query: 340 AGALSRLWLATALVIESIATGSRRLDVA 257 +G + RLW A+ + + TG+R LD+A Sbjct: 49 SGGMHRLWKRFAIELSGVRTGNRVLDIA 76
>IDI_AGRME (Q8KP37) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) (IPP:DMAPP isomerase) Length = 206 Score = 28.5 bits (62), Expect = 7.1 Identities = 19/65 (29%), Positives = 24/65 (36%) Frame = +3 Query: 174 AFAVHPATVAPRRHSVRLRQQFCAPIGTATSRRRLPVAMLSITNAVASQSRESAPASAPR 353 +F HPA P H+VR R +F + LP T+A E P R Sbjct: 84 SFCGHPAPAEPLPHAVRRRAEFELGLELRDVEPVLPFFRYRATDASGIVEHEICPVYTAR 143 Query: 354 KLSFP 368 S P Sbjct: 144 TSSVP 148
>RECA_SYNY3 (P74737) Protein recA (Recombinase A)| Length = 354 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -1 Query: 352 RGADAGALSRLWLATALVIESIATGSRRLDVAV 254 R GA+ RL AT + +E+I+TG+ LD+A+ Sbjct: 22 RSFGKGAIMRLGDATQMRVETISTGALTLDLAL 54
>RECA_ANASP (P58552) Protein recA (Recombinase A)| Length = 357 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -1 Query: 352 RGADAGALSRLWLATALVIESIATGSRRLDVAV 254 R GA+ RL AT + +E+I+TG+ LD+A+ Sbjct: 23 RSFGKGAIMRLGDATRMRVETISTGALTLDLAL 55
>RECA_ANAVT (P14167) Protein recA (Recombinase A)| Length = 358 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -1 Query: 352 RGADAGALSRLWLATALVIESIATGSRRLDVAV 254 R GA+ RL AT + +E+I+TG+ LD+A+ Sbjct: 23 RSFGKGAIMRLGDATRMRVETISTGALTLDLAL 55
>RECA_WOLSU (Q7M8Q1) Protein recA (Recombinase A)| Length = 350 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/31 (51%), Positives = 20/31 (64%) Frame = -1 Query: 337 GALSRLWLATALVIESIATGSRRLDVAVPIG 245 GAL RL I+SI+TGS LD+A+ IG Sbjct: 25 GALVRLGEKPVEKIDSISTGSLGLDIALGIG 55
>RECA_THETN (Q8RA55) Protein recA (Recombinase A)| Length = 342 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -1 Query: 337 GALSRLWLATALVIESIATGSRRLDVAVPIG 245 GA+ RL L +E I TGS LD+A+ +G Sbjct: 23 GAIMRLGDTAKLNVEVIPTGSLELDIALGVG 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,491,879 Number of Sequences: 219361 Number of extensions: 526904 Number of successful extensions: 2548 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2286 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2528 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
