>dbj|AK065673.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035D19, full
           insert sequence
          Length = 1317

 Score =  135 bits (68), Expect = 1e-28
 Identities = 136/158 (86%), Gaps = 3/158 (1%)
 Strand = Plus / Plus

                                                                       
Query: 267 aggcggcggctgccagttgcgatgctttcgattactaacgccgtcgccagccagagccgc 326
           ||||||||| | ||| | |||| ||||||||| || |||||| |||| |||||||||| |
Sbjct: 193 aggcggcggtttccaatggcgaggctttcgatcacgaacgccctcgctagccagagcctc 252

                                                                       
Query: 327 gagagcgcccccgcgtcggcacctcgcaagctctctttcccgatactggtgaatagttgc 386
           ||||| ||||| ||| ||   |||| ||||| ||| ||||||||||||||||||||||| 
Sbjct: 253 gagagtgcccctgcggcg---cctcccaagcactcgttcccgatactggtgaatagttgt 309

                                                 
Query: 387 accgggaaaatggggaagtctgttgctgaagcagctgt 424
           || ||||||||||||||| |||||||||||||||||||
Sbjct: 310 actgggaaaatggggaaggctgttgctgaagcagctgt 347

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                   
Query: 374      ggtgaatagttgcaccgggaaaatggggaagtctgttgctgaagcagctgt 424
                |||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct: 14020970 ggtgaatagttgtactgggaaaatggggaaggctgttgctgaagcagctgt 14020920



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 91/110 (82%), Gaps = 3/110 (2%)
 Strand = Plus / Minus

                                                                            
Query: 267      aggcggcggctgccagttgcgatgctttcgattactaacgccgtcgccagccagagccgc 326
                ||||||||| | ||| | |||| ||||||||| || |||||| |||| |||||||||| |
Sbjct: 14022608 aggcggcggtttccaatggcgaggctttcgatcacgaacgccctcgctagccagagcctc 14022549

                                                                  
Query: 327      gagagcgcccccgcgtcggcacctcgcaagctctctttcccgatactggt 376
                ||||| ||||| ||| ||   |||| ||||| ||| ||||||||||||||
Sbjct: 14022548 gagagtgcccctgcggcg---cctcccaagcactcgttcccgatactggt 14022502

>dbj|AP004180.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_B05
          Length = 117057

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                
Query: 374   ggtgaatagttgcaccgggaaaatggggaagtctgttgctgaagcagctgt 424
             |||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct: 90608 ggtgaatagttgtactgggaaaatggggaaggctgttgctgaagcagctgt 90558



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 91/110 (82%), Gaps = 3/110 (2%)
 Strand = Plus / Minus

                                                                         
Query: 267   aggcggcggctgccagttgcgatgctttcgattactaacgccgtcgccagccagagccgc 326
             ||||||||| | ||| | |||| ||||||||| || |||||| |||| |||||||||| |
Sbjct: 92246 aggcggcggtttccaatggcgaggctttcgatcacgaacgccctcgctagccagagcctc 92187

                                                               
Query: 327   gagagcgcccccgcgtcggcacctcgcaagctctctttcccgatactggt 376
             ||||| ||||| ||| ||   |||| ||||| ||| ||||||||||||||
Sbjct: 92186 gagagtgcccctgcggcg---cctcccaagcactcgttcccgatactggt 92140

>dbj|AP004136.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1287_H05
          Length = 97812

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                               
Query: 374  ggtgaatagttgcaccgggaaaatggggaagtctgttgctgaagcagctgt 424
            |||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct: 2480 ggtgaatagttgtactgggaaaatggggaaggctgttgctgaagcagctgt 2430



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 91/110 (82%), Gaps = 3/110 (2%)
 Strand = Plus / Minus

                                                                        
Query: 267  aggcggcggctgccagttgcgatgctttcgattactaacgccgtcgccagccagagccgc 326
            ||||||||| | ||| | |||| ||||||||| || |||||| |||| |||||||||| |
Sbjct: 4118 aggcggcggtttccaatggcgaggctttcgatcacgaacgccctcgctagccagagcctc 4059

                                                              
Query: 327  gagagcgcccccgcgtcggcacctcgcaagctctctttcccgatactggt 376
            ||||| ||||| ||| ||   |||| ||||| ||| ||||||||||||||
Sbjct: 4058 gagagtgcccctgcggcg---cctcccaagcactcgttcccgatactggt 4012

>dbj|AK102253.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088H16, full
           insert sequence
          Length = 1559

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 358 tctctttcccgatactggtgaatagttgcaccgggaaaatgggg 401
           ||||||||||||||||||||||| | ||||| || |||||||||
Sbjct: 227 tctctttcccgatactggtgaatggatgcactggtaaaatgggg 270

>dbj|AK069529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019A15, full
           insert sequence
          Length = 2225

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 358 tctctttcccgatactggtgaatagttgcaccgggaaaatgggg 401
           ||||||||||||||||||||||| | ||||| || |||||||||
Sbjct: 145 tctctttcccgatactggtgaatggatgcactggtaaaatgggg 188

>dbj|AK059346.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C01, full
           insert sequence
          Length = 1371

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 358 tctctttcccgatactggtgaatagttgcaccgggaaaatgggg 401
           ||||||||||||||||||||||| | ||||| || |||||||||
Sbjct: 219 tctctttcccgatactggtgaatggatgcactggtaaaatgggg 262

>gb|AC121094.8| Mus musculus chromosome 18, clone RP24-322I3, complete sequence
          Length = 164629

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 45     aaggctaaaaccctagaaaga 65
              |||||||||||||||||||||
Sbjct: 121434 aaggctaaaaccctagaaaga 121414

>gb|AC144938.3| Mus musculus BAC clone RP24-129H18 from chromosome 18, complete sequence
          Length = 207182

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 45     aaggctaaaaccctagaaaga 65
              |||||||||||||||||||||
Sbjct: 205128 aaggctaaaaccctagaaaga 205148

>gb|AC160409.6| Mus musculus 10 BAC RP23-184O11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 209766

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 400    ggaagtctgttgctgaagcag 420
              |||||||||||||||||||||
Sbjct: 142853 ggaagtctgttgctgaagcag 142873

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 42       cgaaaggctaaaaccctagaa 62
                |||||||||||||||||||||
Sbjct: 40860645 cgaaaggctaaaaccctagaa 40860625

>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0052O12
          Length = 167881

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 42     cgaaaggctaaaaccctagaa 62
              |||||||||||||||||||||
Sbjct: 163291 cgaaaggctaaaaccctagaa 163271

>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0506E04
          Length = 139934

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 42    cgaaaggctaaaaccctagaa 62
             |||||||||||||||||||||
Sbjct: 72751 cgaaaggctaaaaccctagaa 72731

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 83      cagcccagccgccgcccaccacgct 107
               |||||||||||||||| ||||||||
Sbjct: 4962618 cagcccagccgccgccgaccacgct 4962594

>dbj|AK099213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084E08,
          full insert sequence
          Length = 1850

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 cgaaaggctaaaaccctagaa 62
          |||||||||||||||||||||
Sbjct: 60 cgaaaggctaaaaccctagaa 80

>gb|AC157016.3| Mus musculus 10 BAC RP24-505M19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 168538

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 400    ggaagtctgttgctgaagcag 420
              |||||||||||||||||||||
Sbjct: 138214 ggaagtctgttgctgaagcag 138234

>dbj|AK068196.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136M02,
          full insert sequence
          Length = 1922

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 cgaaaggctaaaaccctagaa 62
          |||||||||||||||||||||
Sbjct: 73 cgaaaggctaaaaccctagaa 93

>gb|DQ200356.1| Pseudomonas stutzeri OrfX gene, partial cds; nap operon, complete
            sequence; and Dcd (dcd) gene, partial cds
          Length = 5139

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 253  gcacggcgacgtcaaggcgg 272
            ||||||||||||||||||||
Sbjct: 1365 gcacggcgacgtcaaggcgg 1384

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    cgccgttcaccccgccaccg 198
              ||||||||||||||||||||
Sbjct: 467599 cgccgttcaccccgccaccg 467580

>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14
          Length = 324050

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    cgccgttcaccccgccaccg 198
              ||||||||||||||||||||
Sbjct: 125527 cgccgttcaccccgccaccg 125508

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 256      cggcgacgtcaaggcggcgg 275
                ||||||||||||||||||||
Sbjct: 22845851 cggcgacgtcaaggcggcgg 22845870

>gb|AF466646.1| Zea mays putative transposase (Z195D10.1) gene, partial cds;
             glycyl-tRNA synthetase (Z195D10.2), ornithine
             carbamoyltransferase (Z195D10.3), putative gag protein
             (Z195D10.5), putative SET-domain transcriptional regulator
             (Z195D10.7), putative oxysterol-binding protein
             (Z195D10.8), putative polyprotein (Z195D10.9), putative
             oxysterol-binding protein (Z195D10.10), putative gag-pol
             polyprotein (Z195D10.11), putative
             phosphatidylinositol-4-phosphate-5-kinase (Z195D10.12),
             hypothetical protein (Z195D10.15), putative gag-pol
             polyprotein (Z195D10.16), putative polyprotein
             (Z195D10.17), putative retrotransposon protein
             (Z195D10.18), and prpol (Z195D10.19) genes, complete cds;
             and putative teosinte branched2 (Z195D10.20) gene, partial
             cds
          Length = 141939

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 83    cagcccagcc-gccgcccaccacgctct 109
             |||||||||| |||||||||||||||||
Sbjct: 90619 cagcccagccagccgcccaccacgctct 90646

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 89      agccgccgcccaccacgctc 108
               ||||||||||||||||||||
Sbjct: 1444120 agccgccgcccaccacgctc 1444139

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 256      cggcgacgtcaaggcggcgg 275
                ||||||||||||||||||||
Sbjct: 22774042 cggcgacgtcaaggcggcgg 22774061

>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 148705

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    cggcgacgtcaaggcggcgg 275
              ||||||||||||||||||||
Sbjct: 110993 cggcgacgtcaaggcggcgg 110974


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,777,398
Number of Sequences: 3902068
Number of extensions: 2777398
Number of successful extensions: 52154
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51806
Number of HSP's gapped (non-prelim): 349
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)