ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast42f09 |
|---|---|
| Clone Library Name | barley_pub |
>BGLX_SALTY (Q56078) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (T-cell inhibitor) Length = 765 Score = 74.3 bits (181), Expect = 2e-13 Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Frame = +3 Query: 27 LMTIHMPAYYNSIIRGVSTVMTSYSSWNGKKMHANHFLVTDFLKNKLKFRGFVISDWQGI 206 L +MP Y + G VM + +S NG ++ +L+ D L+++ F+G +SD I Sbjct: 232 LFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRDEWGFKGITVSDHGAI 291 Query: 207 -DRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQVKNNIIPMSRINDAVYR 383 + I + +V + AG+DM M Y++++ L +K+ + M+ ++DA Sbjct: 292 KELIKHGTAADPEDAVRVALKAGVDMSMADEYYSKYLPGL---IKSGKVTMAELDDATRH 348 Query: 384 ILRVKFTMGLFESPYA----------DPSLVGELGKQEHRDLAREA 491 +L VK+ MGLF PY+ D + L ++E R++ARE+ Sbjct: 349 VLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVARES 394
>BGLX_ECOLI (P33363) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 765 Score = 70.9 bits (172), Expect = 2e-12 Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Frame = +3 Query: 27 LMTIHMPAYYNSIIRGVSTVMTSYSSWNGKKMHANHFLVTDFLKNKLKFRGFVISDWQGI 206 L +MP Y + G VM + +S NG ++ +L+ D L+++ F+G +SD I Sbjct: 232 LFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRDQWGFKGITVSDHGAI 291 Query: 207 -DRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQVKNNIIPMSRINDAVYR 383 + I + +V + +GI+M M Y++++ L +K+ + M+ ++DA Sbjct: 292 KELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGL---IKSGKVTMAELDDAARH 348 Query: 384 ILRVKFTMGLFESPYA----------DPSLVGELGKQEHRDLAREA 491 +L VK+ MGLF PY+ D + L ++E R++ARE+ Sbjct: 349 VLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVARES 394
>BGLS_HANAN (P06835) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 825 Score = 63.5 bits (153), Expect = 3e-10 Identities = 42/134 (31%), Positives = 64/134 (47%) Frame = +3 Query: 12 IDAHGLMTIHMPAYYNSIIRGVSTVMTSYSSWNGKKMHANHFLVTDFLKNKLKFRGFVIS 191 ID + I++ + ++ GVS++M SY+ NG N +L+ LK +L F+GFV++ Sbjct: 239 IDDRAMHEIYLWPFAEAVRGGVSSIMCSYNKLNGSHACQNSYLLNYLLKEELGFQGFVMT 298 Query: 192 DWQGIDRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQVKNNIIPMSRIND 371 DW + YS AG+DM M P F +LT V N +P R++D Sbjct: 299 DWGAL------------YSGIDAANAGLDMDM-PCEAQYFGGNLTTAVLNGTLPQDRLDD 345 Query: 372 AVYRILRVKFTMGL 413 RIL G+ Sbjct: 346 MATRILSALIYSGV 359
>BGLB_CLOTM (P14002) Thermostable beta-glucosidase B (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 754 Score = 59.3 bits (142), Expect = 5e-09 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Frame = +3 Query: 3 DTIIDAHGLMTIHMPAYYNSIIRGVS-TVMTSYSSWNGKKMHANHFLVTDFLKNKLKFRG 179 DTI+D L I+ ++ N++ + VM +Y+ NG+ N +L+T+ LKN+ G Sbjct: 167 DTIVDERTLREIYFASFENAVKKARPWVVMCAYNKLNGEYCSENRYLLTEVLKNEWMHDG 226 Query: 180 FVISDWQGI-DRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQVKNNIIPM 356 FV+SDW + DR+ +G+ AG+D+ M P ++ + VK+ + Sbjct: 227 FVVSDWGAVNDRV-------------SGLDAGLDLEM-PTSHGITDKKIVEAVKSGKLSE 272 Query: 357 SRINDAVYRILRV 395 + +N AV RIL+V Sbjct: 273 NILNRAVERILKV 285
>BGLS_AGRTU (P27034) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)| (Beta-D-glucoside glucohydrolase) Length = 818 Score = 53.5 bits (127), Expect = 3e-07 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 1/137 (0%) Frame = +3 Query: 12 IDAHGLMTIHMPAYYNSIIR-GVSTVMTSYSSWNGKKMHANHFLVTDFLKNKLKFRGFVI 188 +D L I++P + ++ + GV VM+SY+ NG N +L+T L+ + F G V+ Sbjct: 161 VDERTLREIYLPPFEEAVKKAGVKAVMSSYNKLNGTYTSENPWLLTKVLREEWGFDGVVM 220 Query: 189 SDWQGIDRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQVKNNIIPMSRIN 368 SDW G S+S + AG+D+ M P + + + L V+ + + Sbjct: 221 SDWFG------------SHSTAETINAGLDLEM-PGPWRDRGEKLVAAVREGKVKAETVR 267 Query: 369 DAVYRILRVKFTMGLFE 419 + RIL + +G FE Sbjct: 268 ASARRILLLLERVGAFE 284
>BGL1_ASPAC (P48825) Beta-glucosidase 1 precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 860 Score = 52.8 bits (125), Expect = 5e-07 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 14/155 (9%) Frame = +3 Query: 3 DTI---IDAHGLMTIHMPAYYNSIIRGVSTVMTSYSSWNGKKMHANHFLVTDFLKNKLKF 173 DTI +D + +++ + +++ GV +M SY+ N N + + LK +L F Sbjct: 214 DTISSNVDDKTIHEMYLWPFADAVRAGVGAIMCSYNQINNSYGCQNSYTLNKLLKAELGF 273 Query: 174 RGFVISDWQGIDRITSPPGVNYSYSVEAGVG---AGIDMIM---VPF--AYTEFIDDLTY 329 +GFV+SDW G ++S GVG AG+DM M + F A + + +LT Sbjct: 274 QGFVMSDW----------GAHHS-----GVGSALAGLDMSMPGDITFDSATSFWGTNLTI 318 Query: 330 QVKNNIIPMSRINDAVYRILRVKFTMG---LFESP 425 V N +P R++D RI+ + +G L++ P Sbjct: 319 AVLNGTVPQWRVDDMAVRIMAAYYKVGRDRLYQPP 353
>BGLX_ERWCH (Q46684) Periplasmic beta-glucosidase/beta-xylosidase precursor| [Includes: Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase); Beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase)] Length = 654 Score = 52.8 bits (125), Expect = 5e-07 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 31/179 (17%) Frame = +3 Query: 39 HMPAYYNSIIRGVSTVMTSYS-----SWNGKKMHA-----NHFLVTDFLKNKLKFRGFVI 188 H+ + + + +M +YS SW+GK + N FL+TD L+ + F G ++ Sbjct: 299 HIDPFTGAFEAHAAGIMPTYSILRNASWHGKPIEQVGAGFNRFLLTDLLRGQYGFDGVIL 358 Query: 189 SDW-----------QGIDRITSPPGVNYSYSVEA---------GVGAGIDMIMVPFAYTE 308 SDW G+ P + VE V AG+D F Sbjct: 359 SDWLITNDCKGDCLTGVKPGEKPVPRGMPWGVEKLTPAERFVKAVNAGVDQ----FGGVT 414 Query: 309 FIDDLTYQVKNNIIPMSRINDAVYRILRVKFTMGLFESPYADPSLVGEL-GKQEHRDLA 482 L V++ + +R++ +V RIL+ KF GLFE PY + + ++ G+ + + LA Sbjct: 415 DSALLVQAVQDGKLTEARLDTSVNRILKQKFQTGLFERPYVNATQANDIVGRADWQQLA 473
>BGL1_SACFI (P22506) Beta-glucosidase 1 precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 876 Score = 52.4 bits (124), Expect = 7e-07 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 7/142 (4%) Frame = +3 Query: 12 IDAHGLMTIHMPAYYNSIIRGVSTVMTSYSSWNGKKMHANHFLVTDFLKNKLKFRGFVIS 191 I + +++ + +S+ GV +VM SY+ N N +++ LK +L F+GFV+S Sbjct: 235 IPDRAMHALYLWPFADSVRAGVGSVMCSYNRVNNTYACENSYMMNHLLKEELGFQGFVVS 294 Query: 192 DWQGIDRITSPPGVNYSYSVEAGVGAGIDMIMVPFAY------TEFI-DDLTYQVKNNII 350 DW G S V + + +G+DM M Y T F +LT + N + Sbjct: 295 DW----------GAQLS-GVYSAI-SGLDMSMPGEVYGGWNTGTSFWGQNLTKAIYNETV 342 Query: 351 PMSRINDAVYRILRVKFTMGLF 416 P+ R++D RIL + F Sbjct: 343 PIERLDDMATRILAALYATNSF 364
>BGL2_SACFI (P22507) Beta-glucosidase 2 precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 880 Score = 50.8 bits (120), Expect = 2e-06 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Frame = +3 Query: 36 IHMPAYYNSIIRGVSTVMTSYSSWNGKKMHANHFLVTDFLKNKLKFRGFVISDWQGIDRI 215 +++ + +SI GV +VM SY+ N N +++ LK +L F+GFV+SDW Sbjct: 247 LYLWPFADSIRAGVGSVMCSYNRVNNTYSCENSYMINHLLKEELGFQGFVVSDWAA---- 302 Query: 216 TSPPGVNYSYSVEAGVGAGIDMIMV---PFAYTEFIDDLTYQVKNNIIPMSRINDAVYRI 386 ++ +YS +G+ + ++ + + +LT V N +P+ R++D RI Sbjct: 303 ----QMSGAYSAISGLDMSMPGELLGGWNTGKSYWGQNLTKAVYNETVPIERLDDMATRI 358 Query: 387 LRVKFTMGLF 416 L + F Sbjct: 359 LAALYATNSF 368
>BGLS_KLUMA (P07337) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 845 Score = 34.7 bits (78), Expect = 0.14 Identities = 18/66 (27%), Positives = 34/66 (51%) Frame = +3 Query: 84 VMTSYSSWNGKKMHANHFLVTDFLKNKLKFRGFVISDWQGIDRITSPPGVNYSYSVEAGV 263 +MT+Y+ NG + L+ D L+++ K+ G ++SDW G +Y+ A + Sbjct: 189 IMTAYNKVNGDHCSQSKKLLIDILRDEWKWDGMLMSDWFG------------TYTTAAAI 236 Query: 264 GAGIDM 281 G+D+ Sbjct: 237 KNGLDI 242
>BGLS_BUTFI (P16084) Beta-glucosidase A (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 830 Score = 34.3 bits (77), Expect = 0.19 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +3 Query: 96 YSSWNGKKMHANHFLVTDFLKNKLKFRGFVISDWQG 203 Y+ NG++ +H L+T L+++ F G V+SDW G Sbjct: 737 YNIVNGQRSSESHDLLTGILRDEWGFEGVVVSDWWG 772
>BGLS_RUMAL (P15885) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)| (Beta-D-glucoside glucohydrolase) Length = 947 Score = 32.3 bits (72), Expect = 0.71 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Frame = +3 Query: 3 DTIIDAHGLMTIHMPAYYNSIIRGVS-TVMTSYSSWNGKKMHANHFLVTDFLKNKLKFRG 179 D++ L I++ + ++ + + +VMT+Y NG + L T L+ + F G Sbjct: 632 DSVASERALREIYLKGFEIAVRKSKARSVMTTYGKVNGLWTAGSFDLNTMILRKQWGFDG 691 Query: 180 FVISDWQG--IDRITSPPGVNYSYSVEA 257 F ++DW DR +P N++ V A Sbjct: 692 FTMTDWWANINDRGCAPDKNNFAAMVRA 719
>DYHC_ASHGO (Q9C1M7) Dynein heavy chain, cytosolic (DYHC)| Length = 4083 Score = 31.2 bits (69), Expect = 1.6 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Frame = +3 Query: 51 YYNSIIRGVSTVMTSYSSWNGKKMHANHFLVTDFLK---NKLKFRG-FVISDWQGIDRIT 218 +Y +I ST++ +++++ G+KM FL F+K N L+F G +I D + D I Sbjct: 3396 HYPYVIDPSSTIVDTFANFYGRKMMITSFLDVGFVKQLENALRFGGCILIQDGEFFDPII 3455 Query: 219 S 221 S Sbjct: 3456 S 3456
>RIR1_TREPA (O83972) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 845 Score = 30.8 bits (68), Expect = 2.1 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 10/55 (18%) Frame = +3 Query: 174 RGFVISDWQGIDRITSPPGVNYSY----------SVEAGVGAGIDMIMVPFAYTE 308 RG+V DWQ + R + G+ Y S+ AG AG+D IM + E Sbjct: 696 RGYVSEDWQRLQREVATHGMRNGYLLAVAPTSSTSIIAGTTAGVDPIMKQYFLEE 750
>YL_DROME (P98163) Putative vitellogenin receptor precursor (Protein yolkless)| (YL) Length = 1984 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/31 (51%), Positives = 16/31 (51%) Frame = -3 Query: 435 GQHRGSQIDPW*TSP*ESCRQHR*FCSWG*C 343 G H SQI PW TS SCR H C G C Sbjct: 1323 GHHNQSQIQPWSTSS-RSCRPHLFDCQDGEC 1352
>LONH_ARCFU (O29883) Putative protease La homolog type (EC 3.4.21.-)| Length = 621 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Frame = +3 Query: 249 VEAGVGAGIDMIMVPFAYTEFIDDLT----YQVKNNIIPMSRINDAVYRIL 389 +EA + AG+ +++P + IDD+ ++ K +IP+SRIN+ + +L Sbjct: 553 IEAAIQAGLKKVIIP---KDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVL 600
>CATA_DESVM (Q9ZN99) Catalase (EC 1.11.1.6)| Length = 479 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -3 Query: 477 DRGVPASRVHQRGLGQHRGSQIDP 406 DRG+PAS H G G H S I P Sbjct: 181 DRGIPASYRHMHGFGSHTFSFISP 204
>NAGZ_NITOC (Q3J953) Beta-hexosaminidase (EC 3.2.1.52)| (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) Length = 341 Score = 30.0 bits (66), Expect = 3.5 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 6/90 (6%) Frame = +3 Query: 72 GVSTVMTS---YSSWNGKKMHANHFLVTDFLKNKLKFRGFVISDWQGIDRITSPPGVNYS 242 G+ VM + Y+S + + + + F + L+ +L F+G +ISD + + + S Sbjct: 209 GLPAVMPAHVRYASVDSRPVGFSPFWLETVLRGQLGFQGAIISD--DLSMAGAAEVGDMS 266 Query: 243 YSVEAGVGAGIDMIMV---PFAYTEFIDDL 323 ++A + AG DM +V P Y +D+L Sbjct: 267 ARMQAALSAGCDMALVCNDPDGYALLLDEL 296
>RPOC2_PSEAK (Q3ZJ90) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 3462 Score = 29.6 bits (65), Expect = 4.6 Identities = 10/37 (27%), Positives = 23/37 (62%) Frame = +3 Query: 204 IDRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFI 314 +D + + + Y+Y+ +AG+ GID + +P + ++I Sbjct: 79 VDLVENLKSIGYAYATKAGISLGIDDLKIPPSKKDYI 115
>RPOC_WIGBR (Q8D232) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 29.3 bits (64), Expect = 6.0 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +3 Query: 237 YSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQV 335 +SY+ ++G GID I++P ++ I + Y+V Sbjct: 629 FSYAAKSGSSVGIDDILIPLKKSKIIKNAEYEV 661
>LONH1_THEAC (Q9HJ89) Putative protease La homolog type 1 (EC 3.4.21.-)| Length = 657 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +3 Query: 249 VEAGVGAGIDMIMVP-FAYTEFIDDLTYQVKNNIIPMSRINDAV 377 VEA + AG++ ++VP Y++ I D + K IIP I D + Sbjct: 569 VEAAIEAGLNKVIVPELNYSDIILDADHVNKIEIIPAKTIEDVL 612
>SYI_METMP (Q6LX78) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1034 Score = 29.3 bits (64), Expect = 6.0 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 13/110 (11%) Frame = +3 Query: 105 WNGKKMHANHFLVTDFLKNKLKFRGFVISD-W----------QGIDRITSPPGVNYSYSV 251 WN AN+ ++ DF+ N F+ D W + ++ + P Y++++ Sbjct: 653 WNSYAFSANYMVLDDFVPNNEYFKHVKDEDAWILSRINTVAKEAVEALEKPHLHVYTWAL 712 Query: 252 EAGVGAGIDMIMVPFA--YTEFIDDLTYQVKNNIIPMSRINDAVYRILRV 395 D I+ F+ Y + I D T+ KN++ +S Y I+++ Sbjct: 713 R-------DFILNDFSRWYIKLIRDRTWMEKNDVQKLSAYQTLYYVIMKL 755
>VGLD_HHV1P (P57083) Glycoprotein D precursor| Length = 394 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 168 KFRGFVISDWQGIDRITSPPGVNYSYSVEAGV 263 +FRG D +D++T PPGV Y ++AG+ Sbjct: 41 RFRG---KDLPVLDQLTDPPGVRRVYHIQAGL 69
>VGLD_HHV11 (Q69091) Glycoprotein D precursor| Length = 394 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 168 KFRGFVISDWQGIDRITSPPGVNYSYSVEAGV 263 +FRG D +D++T PPGV Y ++AG+ Sbjct: 41 RFRG---KDLPVLDQLTDPPGVRRVYHIQAGL 69
>VGLD_HHV1H (P06476) Glycoprotein D precursor| Length = 393 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 168 KFRGFVISDWQGIDRITSPPGVNYSYSVEAGV 263 +FRG D +D++T PPGV Y ++AG+ Sbjct: 41 RFRG---KDLPVLDQLTDPPGVRRVYHIQAGL 69 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,699,409 Number of Sequences: 219361 Number of extensions: 1505272 Number of successful extensions: 3679 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3599 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3675 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
