ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast42f05 |
|---|---|
| Clone Library Name | barley_pub |
>SKP1B_ARATH (Q9FHW7) SKP1-like protein 1B (SKP1-like 2) (UFO-binding protein 2)| Length = 171 Score = 112 bits (279), Expect = 5e-25 Identities = 53/104 (50%), Positives = 60/104 (57%) Frame = +1 Query: 127 KMITLKSSDGXXXXXXXXXXXXSQTIRHMIEDDCADNGIPLPNVNSKILSKLIEYCNKHV 306 + ITLKSSDG SQTI+HMIEDDC DNGIPLPNV SKILSK+IEYC +HV Sbjct: 5 RKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHV 64 Query: 307 QXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQXT 438 + EDLK WD+EF+KVDQ T Sbjct: 65 EAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGT 108
>SKP1A_ARATH (Q39255) SKP1-like protein 1A (SKP1-like 1) (UFO-binding protein 1)| Length = 160 Score = 98.2 bits (243), Expect = 8e-21 Identities = 48/104 (46%), Positives = 58/104 (55%) Frame = +1 Query: 127 KMITLKSSDGXXXXXXXXXXXXSQTIRHMIEDDCADNGIPLPNVNSKILSKLIEYCNKHV 306 K I LKSSDG SQTI HM+EDDC DNG+PLPNV SKIL+K+IEYC +HV Sbjct: 4 KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHV 63 Query: 307 QXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQXT 438 + +DLK WDA+F+K+DQ T Sbjct: 64 E----------AAASKAEAVEGAATSDDDLKAWDADFMKIDQAT 97
>SKP1_XENLA (Q71U00) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) Length = 162 Score = 52.0 bits (123), Expect = 6e-07 Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +1 Query: 133 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKLIEYCN 297 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL K+I++C Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62 Query: 298 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQXT 438 H +D+ WD EF+KVDQ T Sbjct: 63 HH-----------KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGT 98
>SKP1_RAT (Q6PEC4) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) Length = 162 Score = 52.0 bits (123), Expect = 6e-07 Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +1 Query: 133 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKLIEYCN 297 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL K+I++C Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62 Query: 298 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQXT 438 H +D+ WD EF+KVDQ T Sbjct: 63 HH-----------KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGT 98
>SKP1_MOUSE (Q9WTX5) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) Length = 162 Score = 52.0 bits (123), Expect = 6e-07 Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +1 Query: 133 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKLIEYCN 297 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL K+I++C Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62 Query: 298 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQXT 438 H +D+ WD EF+KVDQ T Sbjct: 63 HH-----------KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGT 98
>SKP1_HUMAN (P63208) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) (RNA polymerase II elongation factor-like protein) (Organ of Corti protein 2) (OCP-II protein) (OCP-2) (Transcription elongation factor B) (S Length = 162 Score = 52.0 bits (123), Expect = 6e-07 Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +1 Query: 133 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKLIEYCN 297 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL K+I++C Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62 Query: 298 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQXT 438 H +D+ WD EF+KVDQ T Sbjct: 63 HH-----------KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGT 98
>SKP1_CAVPO (P63209) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) (Organ of Corti protein 2) (OCP-II protein) (OCP-2) Length = 162 Score = 52.0 bits (123), Expect = 6e-07 Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +1 Query: 133 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKLIEYCN 297 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL K+I++C Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62 Query: 298 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQXT 438 H +D+ WD EF+KVDQ T Sbjct: 63 HH-----------KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGT 98
>FP21_DICDI (P52285) Glycoprotein FP21 precursor| Length = 162 Score = 49.3 bits (116), Expect = 4e-06 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Frame = +1 Query: 130 MITLKSSDGXXXXXXXXXXXXSQTIRHMIED-DCADNGIPLPNVNSKILSKLIEYCNKHV 306 ++ L+SSD S TI++MIED +D+ IPLPNV S IL K+++YC H Sbjct: 3 LVKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHH 62 Query: 307 QXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQXT 438 Q +D+ +D +F KVDQ T Sbjct: 63 Q-----------HPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPT 95
>YJDC_MOUSE (Q8K2D3) YjeF domain-containing protein 1| Length = 508 Score = 28.5 bits (62), Expect = 7.6 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = +1 Query: 199 TIRHMIEDD-CADNGIPLPNVNSKILSKLIEYCNKH 303 T+ H + + C D+G+ +P+V+ ++ KL+ KH Sbjct: 262 TVPHSVSKEFCTDSGLVVPSVSYELHKKLLSVAEKH 297 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.131 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,864,016 Number of Sequences: 219361 Number of extensions: 321639 Number of successful extensions: 817 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 796 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 810 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
