ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast42f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SLIT1_MOUSE (Q80TR4) Slit homolog 1 protein precursor (Slit-1) 29 5.1
2NHR11_CAEEL (Q23294) Nuclear hormone receptor family member nhr-11 28 8.7
3FRP1_SCHPO (Q04800) Ferric reductase transmembrane component (EC... 28 8.7

>SLIT1_MOUSE (Q80TR4) Slit homolog 1 protein precursor (Slit-1)|
          Length = 1531

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 255  VAHSCLCRKNIAHMDLSRLVAMAVLLGALQPLLSHC-AGDVKGLHPVVLVPEYGSNLLE 428
            +A+SC C+   +    +++ A+A   G LQ L  HC A   KG H  V  P +   L E
Sbjct: 1394 LAYSCQCQDGYSGALCNQVGAVAEPCGGLQCLHGHCQASATKGAH-CVCSPGFSGELCE 1451



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>NHR11_CAEEL (Q23294) Nuclear hormone receptor family member nhr-11|
          Length = 459

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 195 GGKCFRSCSSFINPRISPLTMKYEC 121
           GG+C ++C++F    I+ L +KYEC
Sbjct: 19  GGRCCKACAAFFRRTIA-LDLKYEC 42



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>FRP1_SCHPO (Q04800) Ferric reductase transmembrane component (EC 1.16.1.7)|
           (Ferric-chelate reductase)
          Length = 564

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 207 SQFFGTKNNTAPLLLLVAHSCLCRKNIAHMDLSRLVAMAVLLGAL 341
           S FF  KNN   LLL+ +H    + N  H  LS+    A+++GA+
Sbjct: 132 SYFFSIKNNPFALLLISSHE---KMNYVHRRLSQ---YAIMIGAI 170


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,555,162
Number of Sequences: 219361
Number of extensions: 1158021
Number of successful extensions: 2873
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2873
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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