ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast42e07 |
|---|---|
| Clone Library Name | barley_pub |
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 51.6 bits (122), Expect = 4e-07 Identities = 24/29 (82%), Positives = 28/29 (96%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSVEM 409 LK+FVGNLPF+VDSA LAGLFE+AG+VEM Sbjct: 87 LKLFVGNLPFSVDSAALAGLFERAGNVEM 115
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/29 (79%), Positives = 28/29 (96%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSVEM 409 LK+FVGNLPF+VDSA LAGLFE+AG+VE+ Sbjct: 88 LKLFVGNLPFSVDSAALAGLFERAGNVEI 116
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 50.1 bits (118), Expect = 1e-06 Identities = 24/29 (82%), Positives = 26/29 (89%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSVEM 409 LK+FVGNLPF VDSAQLA LFE AG+VEM Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEM 119
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 47.8 bits (112), Expect = 6e-06 Identities = 22/29 (75%), Positives = 26/29 (89%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSVEM 409 LK+FVGNLPF+ DSA LA LFE+AG+VEM Sbjct: 87 LKIFVGNLPFSADSAALAELFERAGNVEM 115
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 47.0 bits (110), Expect = 1e-05 Identities = 23/29 (79%), Positives = 25/29 (86%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSVEM 409 LK+FVGNL F VDSAQLA LFE AG+VEM Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEM 127
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 43.9 bits (102), Expect = 9e-05 Identities = 21/29 (72%), Positives = 25/29 (86%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSVEM 409 LK+FVGNL F+ DSA LA LFE+AG+VEM Sbjct: 87 LKIFVGNLLFSADSAALAELFERAGNVEM 115
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 41.6 bits (96), Expect = 5e-04 Identities = 20/28 (71%), Positives = 23/28 (82%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSVEM 409 K+FVGNLP+ VDS LA LFEQAG VE+ Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEI 164 Score = 30.4 bits (67), Expect = 1.0 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSV 403 +++VGN+P+ +D A+L LF + G V Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKV 256
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 41.6 bits (96), Expect = 5e-04 Identities = 18/28 (64%), Positives = 24/28 (85%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSVEM 409 K+FVGNLP+ VDS +LAG+F+ AG VE+ Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEI 83 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSV 403 +V+VGNLP+ VD+++L LF + G V Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKV 175
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 40.0 bits (92), Expect = 0.001 Identities = 18/28 (64%), Positives = 23/28 (82%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSVEM 409 K+FVGNLP+ +DS LA LF+QAG VE+ Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEI 125 Score = 29.6 bits (65), Expect = 1.8 Identities = 10/26 (38%), Positives = 19/26 (73%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSV 403 +++VGN+P+ +D A+L +F + G V Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKV 217
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/28 (64%), Positives = 23/28 (82%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSVEM 409 K+FVGNL + V+S LA LFEQAG+VE+ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEI 178 Score = 31.2 bits (69), Expect = 0.61 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSV 403 +V+VGNLP+ VD+ +L LF + G V Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKV 270
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 34.3 bits (77), Expect = 0.072 Identities = 13/26 (50%), Positives = 23/26 (88%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSV 403 +++VGNLPF++ S+QL+ +F +AG+V Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTV 140
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 30.8 bits (68), Expect = 0.80 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 329 VFVGNLPFTVDSAQLAGLFEQAGSVE 406 VFVGN+P+ V Q+ +F Q G V+ Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVK 34
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +2 Query: 329 VFVGNLPFTVDSAQLAGLFEQAGSVE 406 VFVGNLP T + +L F++ G VE Sbjct: 185 VFVGNLPVTCNKKKLKSFFKEYGQVE 210 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +2 Query: 329 VFVGNLPFTVDSAQLAGLFEQAGSV 403 VFVGNLP+ VD + L F GS+ Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSI 311
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +2 Query: 329 VFVGNLPFTVDSAQLAGLFEQAGSVE 406 VFVGNLP T + +L F++ G VE Sbjct: 191 VFVGNLPVTCNKKKLKSFFKEYGQVE 216
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +2 Query: 329 VFVGNLPFTVDSAQLAGLFEQAGSV 403 VFVGN+P+ QL +F + GSV Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSV 42
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +2 Query: 329 VFVGNLPFTVDSAQLAGLFEQAGSV 403 VFVGN+P+ QL +F + GSV Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSV 42
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 329 VFVGNLPFTVDSAQLAGLFEQAGSVE 406 VFVGNLP T + +L F++ G +E Sbjct: 187 VFVGNLPVTCNKKKLKSFFKEYGQIE 212
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSV 403 +K+F+GNLP ++ LFEQ G V Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKV 28
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSV 403 +K+F+GNLP ++ LFEQ G V Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKV 28
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSV 403 +K+F+GNLP ++ LFEQ G V Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKV 28
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSV 403 ++F+GNLP VD ++L F+ G+V Sbjct: 341 QLFIGNLPHEVDKSELKDFFQSYGNV 366
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSV 403 +K+F+GNLP ++ LFEQ G V Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKV 28
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSV 403 +K+F+GNLP ++ LFEQ G V Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKV 28
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSV 403 ++F+GNLP VD ++L F+ G+V Sbjct: 339 QLFIGNLPHEVDKSELKDFFQNFGNV 364
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSV 403 +K+F+GNLP ++ LFEQ G V Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKV 28
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSV 403 +K+F+GNLP ++ LFEQ G V Sbjct: 2 VKLFIGNLPREATEQEIRSLFEQYGKV 28
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSVE 406 + ++VGNL + V A L +F + GSV+ Sbjct: 1 MSIYVGNLSYDVSEADLTAVFAEYGSVK 28
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +2 Query: 329 VFVGNLPFTVDSAQLAGLFEQAGSVE 406 ++VGNL F QL LF + GS+E Sbjct: 48 IYVGNLSFYTSEEQLYELFSKCGSIE 73
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +2 Query: 329 VFVGNLPFTVDSAQLAGLFEQAGSV 403 VFVGN+P+ QL +F + G V Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPV 42
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +2 Query: 329 VFVGNLPFTVDSAQLAGLFEQAGSV 403 VFVGN+P+ QL +F + G V Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPV 42
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +2 Query: 329 VFVGNLPFTVDSAQLAGLFEQAGSV 403 VFVGN+P+ QL +F + G V Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPV 42
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +2 Query: 329 VFVGNLPFTVDSAQLAGLFEQAGSV 403 VFVGN+P+ QL +F + G V Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPV 42
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSVE 406 K+FVG LP+ A L FE G +E Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIE 38
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSV 403 +K+FVG +P T L LFEQ G+V Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAV 42
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSV 403 +K+FVG +P T L LFEQ G+V Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAV 42
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFEQAGSVE 406 K+FVG LP+ A L FE G +E Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIE 59
>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding protein 7)| (Fragment) Length = 290 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 5 PSPNPSARTLSPVESYPPSAMAATLF 82 P+PNPS T SP+E P +T F Sbjct: 130 PTPNPSTTTGSPLEDSPTVVPKSTTF 155
>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1| Length = 305 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +2 Query: 326 KVFVGNLPFTVDSAQLAGLFE 388 K+FVGNLP VDS +L +F+ Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQ 24
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSVE 406 ++++VG+L F + L G+FE G +E Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIE 277
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +2 Query: 323 LKVFVGNLPFTVDSAQLAGLFEQAGSVE 406 ++++VG+L F + L G+FE G +E Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIE 277 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,063,203 Number of Sequences: 219361 Number of extensions: 204400 Number of successful extensions: 1162 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 1102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1162 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
