ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast42e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CI004_HUMAN (Q9P0K9) Protein C9orf4 (Brain protein CG-6) 32 0.58
2DGAT1_CERAE (Q9GMF1) Diacylglycerol O-acyltransferase 1 (EC 2.3.... 29 2.9
3IRAK1_MOUSE (Q62406) Interleukin-1 receptor-associated kinase 1 ... 29 3.7
4SAS3_YEAST (P34218) Protein SAS3 28 4.9
5CSF1R_HUMAN (P07333) Macrophage colony-stimulating factor 1 rece... 28 4.9
6DGAT1_HUMAN (O75907) Diacylglycerol O-acyltransferase 1 (EC 2.3.... 28 4.9

>CI004_HUMAN (Q9P0K9) Protein C9orf4 (Brain protein CG-6)|
          Length = 344

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -3

Query: 227 SGARGAGTSPPRDRTAPAAAS*T---GRCARQWRPPR*TSPAW 108
           +G  G G+ P R R APAAA        CAR  RPPR     W
Sbjct: 21  AGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPRQHPGVW 63



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>DGAT1_CERAE (Q9GMF1) Diacylglycerol O-acyltransferase 1 (EC 2.3.1.20)|
           (Diglyceride acyltransferase)
          Length = 491

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +1

Query: 124 HRGGLH*RAQRPVHDAAAGAVRSRGGDVPAP 216
           H GG    A+  V DAAAG      GD PAP
Sbjct: 22  HGGGGPAAAEEEVRDAAAGPDMGAAGDAPAP 52



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>IRAK1_MOUSE (Q62406) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)|
           (IRAK-1) (IRAK) (Pelle-like protein kinase) (mPLK)
          Length = 710

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 126 SRGPPLTSAASGS*RGCWSGPVSGRRRACP 215
           S GPPL S+A  S +     PVSG +RA P
Sbjct: 166 SLGPPLPSSAPSSTKSSPESPVSGLQRAHP 195



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>SAS3_YEAST (P34218) Protein SAS3|
          Length = 831

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 5   WYLMMRPRSVYLVDYACFRTKPS--HRVPFGTFLEHAKLVTFIEG 133
           WY+        + D++  RT P+   ++ F TFLE++K  T+I G
Sbjct: 192 WYVPYGGTIKKMKDFSTKRTLPTWEDKIKFLTFLENSKSATYING 236



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>CSF1R_HUMAN (P07333) Macrophage colony-stimulating factor 1 receptor precursor|
            (CSF-1-R) (EC 2.7.10.1) (Fms proto-oncogene) (c-fms)
            (CD115 antigen)
          Length = 972

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +2

Query: 23   PRSVYLVDYACFRTKPSHRVPFGTFLEHAKLVTFIEGASIDERSVRFMTRLLERSGLG 196
            P+++Y +  AC+  +P+HR  F       ++ +F++  + ++R  R  T L   S  G
Sbjct: 882  PKNIYSIMQACWALEPTHRPTF------QQICSFLQEQAQEDRRERDYTNLPSSSRSG 933



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>DGAT1_HUMAN (O75907) Diacylglycerol O-acyltransferase 1 (EC 2.3.1.20)|
           (Diglyceride acyltransferase) (ACAT-related gene product
           1)
          Length = 488

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +1

Query: 124 HRGGLH*RAQRPVHDAAAGAVRSRGGDVPAP 216
           H GG    A+  V DAAAG      GD PAP
Sbjct: 19  HGGGGPAAAEEEVRDAAAGPDVGAAGDAPAP 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,993,660
Number of Sequences: 219361
Number of extensions: 427148
Number of successful extensions: 1402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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