ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast42c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197201.1| Oryza sativa (japonica cultivar-group) putative... 58 3e-05
2gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 gen... 58 3e-05
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
4dbj|AK101839.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
6dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome 44 0.39
7gb|AC090386.13| Homo sapiens chromosome 18, clone RP11-797E24, c... 44 0.39
8ref|XM_465190.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
9emb|CR956646.4| Pig DNA sequence from clone CH242-247L10 on chro... 42 1.6
10gb|AC115910.6| Mus musculus, clone RP24-480O17, complete sequence 42 1.6
11dbj|AK142778.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 42 1.6
12gb|AC161265.2| Mus musculus BAC clone RP23-271F18 from chromosom... 42 1.6
13gb|AC156637.2| Mus musculus BAC clone RP24-241I18 from chromosom... 42 1.6
14dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
16dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
17dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18dbj|AP005607.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19gb|AC159896.3| Mus musculus BAC clone RP23-265F16 from chromosom... 42 1.6
20gb|BC090014.1| Rattus norvegicus cDNA clone IMAGE:7324675 42 1.6
21emb|CT025617.12| Mouse DNA sequence from clone RP23-442A13 on ch... 42 1.6
22gb|AC162449.4| Mus musculus chromosome 1, clone RP23-424E19, com... 42 1.6
23emb|AL672017.10| Mouse DNA sequence from clone RP23-306J24 on ch... 42 1.6
24gb|AC162179.2| Mus musculus BAC clone RP23-197K11 from chromosom... 42 1.6
25gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 6.2
26emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.2
27gb|AC129193.4| Mus musculus BAC clone RP24-136L12 from chromosom... 40 6.2
28emb|AL357060.31| Human DNA sequence from clone RP11-356I2 on chr... 40 6.2
29emb|AL137076.6| Human DNA sequence from clone RP5-893G23 on chro... 40 6.2
30gb|AC102133.27| Mus musculus chromosome 1, clone RP23-241J21, co... 40 6.2
31gb|AC162170.5| Mus musculus chromosome 1, clone RP23-240G10, com... 40 6.2
32emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.2
33emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment ... 40 6.2
34emb|AL645910.8| Mouse DNA sequence from clone RP23-173M6 on chro... 40 6.2
35dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 6.2
36gb|AE011797.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.2
37gb|AC008180.15| Homo sapiens 3 BAC RP11-292L5 (Roswell Park Canc... 40 6.2
38dbj|AK152727.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 6.2
39dbj|AK152115.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 6.2
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
41dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
42dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
43dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
44emb|AL669967.12| Mouse DNA sequence from clone RP23-216M21 on ch... 40 6.2
45dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
46emb|AL772311.19| Mouse DNA sequence from clone RP23-87P16 on chr... 40 6.2
47gb|AC167132.12| Mus musculus chromosome 8, clone RP24-335A22, co... 40 6.2 
>ref|NM_197201.1| Oryza sativa (japonica cultivar-group) putative ribosomal protein
          (OSJNBa0078O01.7), mRNA
          Length = 1178

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 59 cgagatggcgagctcggcgctgagacgatccct 91
          |||||||||||||||||||||||| ||||||||
Sbjct: 31 cgagatggcgagctcggcgctgaggcgatccct 63



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 426 gagaaattggatgacgcggcccgcacctttca 457
           ||||| |||||||| ||| |||||||||||||
Sbjct: 344 gagaagttggatgaggcgtcccgcacctttca 375
to top
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete
             sequence
          Length = 146664

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 59    cgagatggcgagctcggcgctgagacgatccct 91
             |||||||||||||||||||||||| ||||||||
Sbjct: 71441 cgagatggcgagctcggcgctgaggcgatccct 71473



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 426   gagaaattggatgacgcggcccgcacctttca 457
             ||||| |||||||| ||| |||||||||||||
Sbjct: 72309 gagaagttggatgaggcgtcccgcacctttca 72340
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 59       cgagatggcgagctcggcgctgagacgatccct 91
                |||||||||||||||||||||||| ||||||||
Sbjct: 18568030 cgagatggcgagctcggcgctgaggcgatccct 18568062



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 426      gagaaattggatgacgcggcccgcacctttca 457
                ||||| |||||||| ||| |||||||||||||
Sbjct: 18568898 gagaagttggatgaggcgtcccgcacctttca 18568929
to top
>dbj|AK101839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069D17, full
           insert sequence
          Length = 1239

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 59  cgagatggcgagctcggcgctgagacgatccct 91
           |||||||||||||||||||||||| ||||||||
Sbjct: 119 cgagatggcgagctcggcgctgaggcgatccct 151



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 426 gagaaattggatgacgcggcccgcacctttca 457
           ||||| |||||||| ||| |||||||||||||
Sbjct: 432 gagaagttggatgaggcgtcccgcacctttca 463
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 59       cgagatggcgagctcggcgctgagacgatccct 91
                |||||||||||||||||||||||| ||||||||
Sbjct: 18578483 cgagatggcgagctcggcgctgaggcgatccct 18578515



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 426      gagaaattggatgacgcggcccgcacctttca 457
                ||||| |||||||| ||| |||||||||||||
Sbjct: 18579351 gagaagttggatgaggcgtcccgcacctttca 18579382
to top
>dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome
          Length = 1166239

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 282    ggggactcctttggaagaagac 303
              ||||||||||||||||||||||
Sbjct: 951548 ggggactcctttggaagaagac 951527
to top
>gb|AC090386.13| Homo sapiens chromosome 18, clone RP11-797E24, complete sequence
          Length = 185563

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1     ctccctccctctgctcccccct 22
             ||||||||||||||||||||||
Sbjct: 71885 ctccctccctctgctcccccct 71864
to top
>ref|XM_465190.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 702

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 139 ccgccgccacctcctcgttcc 159
           |||||||||||||||||||||
Sbjct: 561 ccgccgccacctcctcgttcc 581
to top
>emb|CR956646.4| Pig DNA sequence from clone CH242-247L10 on chromosome 17, complete
             sequence
          Length = 171329

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 138   tccgccgccacctcctcgttc 158
             |||||||||||||||||||||
Sbjct: 41774 tccgccgccacctcctcgttc 41794
to top
>gb|AC115910.6| Mus musculus, clone RP24-480O17, complete sequence
          Length = 257036

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     ctccctccctctgctcccccc 21
             |||||||||||||||||||||
Sbjct: 48124 ctccctccctctgctcccccc 48104
to top
>dbj|AK142778.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930008P07 product:unclassifiable, full
            insert sequence
          Length = 4175

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1    ctccctccctctgctcccccc 21
            |||||||||||||||||||||
Sbjct: 1355 ctccctccctctgctcccccc 1375
to top
>gb|AC161265.2| Mus musculus BAC clone RP23-271F18 from chromosome 9, complete sequence
          Length = 203839

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1      ctccctccctctgctcccccc 21
              |||||||||||||||||||||
Sbjct: 197201 ctccctccctctgctcccccc 197221
to top
>gb|AC156637.2| Mus musculus BAC clone RP24-241I18 from chromosome 12, complete
             sequence
          Length = 156014

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     ctccctccctctgctcccccc 21
             |||||||||||||||||||||
Sbjct: 78266 ctccctccctctgctcccccc 78246
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 113      ccgcatcctcccttcccaccc 133
                |||||||||||||||||||||
Sbjct: 30616518 ccgcatcctcccttcccaccc 30616538
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 139      ccgccgccacctcctcgttcc 159
                |||||||||||||||||||||
Sbjct: 12194833 ccgccgccacctcctcgttcc 12194853
to top
>dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1206D04
          Length = 130176

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   ccgcatcctcccttcccaccc 133
             |||||||||||||||||||||
Sbjct: 19174 ccgcatcctcccttcccaccc 19194
to top
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0069C14
          Length = 150579

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    ccgcatcctcccttcccaccc 133
              |||||||||||||||||||||
Sbjct: 115081 ccgcatcctcccttcccaccc 115101
to top
>dbj|AP005607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ9003_D08
          Length = 88854

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 139   ccgccgccacctcctcgttcc 159
             |||||||||||||||||||||
Sbjct: 18294 ccgccgccacctcctcgttcc 18314
to top
>gb|AC159896.3| Mus musculus BAC clone RP23-265F16 from chromosome 9, complete sequence
          Length = 198120

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 275   tggggttggggactcctttggaaga 299
             ||||||||||||||||| |||||||
Sbjct: 45890 tggggttggggactcctatggaaga 45866
to top
>gb|BC090014.1| Rattus norvegicus cDNA clone IMAGE:7324675
          Length = 2574

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 226  ttggagaccagaggaagccag 246
            |||||||||||||||||||||
Sbjct: 1545 ttggagaccagaggaagccag 1565
to top
>emb|CT025617.12| Mouse DNA sequence from clone RP23-442A13 on chromosome 9, complete
             sequence
          Length = 193308

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 275   tggggttggggactcctttggaaga 299
             ||||||||||||||||| |||||||
Sbjct: 40695 tggggttggggactcctatggaaga 40719
to top
>gb|AC162449.4| Mus musculus chromosome 1, clone RP23-424E19, complete sequence
          Length = 184609

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      ctccctccctctgctcccccc 21
              |||||||||||||||||||||
Sbjct: 130561 ctccctccctctgctcccccc 130541
to top
>emb|AL672017.10| Mouse DNA sequence from clone RP23-306J24 on chromosome X, complete
             sequence
          Length = 199473

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     ctccctccctctgctcccccc 21
             |||||||||||||||||||||
Sbjct: 25033 ctccctccctctgctcccccc 25053
to top
>gb|AC162179.2| Mus musculus BAC clone RP23-197K11 from chromosome 9, complete sequence
          Length = 210741

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1      ctccctccctctgctcccccc 21
              |||||||||||||||||||||
Sbjct: 111016 ctccctccctctgctcccccc 111036
to top
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
              genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 323    gggtgtcttcagtcagcagggtga 346
              ||||||||||||||||||| ||||
Sbjct: 690290 gggtgtcttcagtcagcagtgtga 690313
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 70      gctcggcgctgagacgatcc 89
               ||||||||||||||||||||
Sbjct: 1911523 gctcggcgctgagacgatcc 1911504
to top
>gb|AC129193.4| Mus musculus BAC clone RP24-136L12 from chromosome 9, complete sequence
          Length = 181376

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 229   gagaccagaggaagccagatgaca 252
             ||||||| ||||||||||||||||
Sbjct: 69786 gagaccataggaagccagatgaca 69809
to top
>emb|AL357060.31| Human DNA sequence from clone RP11-356I2 on chromosome 6 Contains three
              novel genes, the TNFAIP3 gene for tumour necrosis factor
              alpha-induced protein 3 and a CpG island, complete sequence
          Length = 182209

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      ctccctccctctgctccccc 20
              ||||||||||||||||||||
Sbjct: 116499 ctccctccctctgctccccc 116480
to top
>emb|AL137076.6| Human DNA sequence from clone RP5-893G23 on chromosome 1p34.2-36.11
             Contains a novel gene, complete sequence
          Length = 89259

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ctccctccctctgctccccc 20
             ||||||||||||||||||||
Sbjct: 74200 ctccctccctctgctccccc 74181
to top
>gb|AC102133.27| Mus musculus chromosome 1, clone RP23-241J21, complete sequence
          Length = 203349

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 273  gatggggttggggactcctttggaagaa 300
            ||||||||||||||||| | ||||||||
Sbjct: 7237 gatggggttggggactcttgtggaagaa 7210
to top
>gb|AC162170.5| Mus musculus chromosome 1, clone RP23-240G10, complete sequence
          Length = 159806

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 273   gatggggttggggactcctttggaagaa 300
             ||||||||||||||||| | ||||||||
Sbjct: 78469 gatggggttggggactcttgtggaagaa 78496
to top
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     cgggttgcgccgccgccgac 47
              ||||||||||||||||||||
Sbjct: 154214 cgggttgcgccgccgccgac 154233
to top
>emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment 17/24
          Length = 314250

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    gggaagctcgatggggttgg 283
              ||||||||||||||||||||
Sbjct: 292773 gggaagctcgatggggttgg 292754
to top
>emb|AL645910.8| Mouse DNA sequence from clone RP23-173M6 on chromosome 11 Contains the
             5' end of a novel gene, the Mtmr3 gene for myotubularin
             related protein 3 and a glyceraldehyde-3-phosphate
             dehydrogenase (Gapd) pseudogene, complete sequence
          Length = 204413

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   atcctcccttcccacccagc 136
             ||||||||||||||||||||
Sbjct: 89950 atcctcccttcccacccagc 89969
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 70      gctcggcgctgagacgatcc 89
               ||||||||||||||||||||
Sbjct: 2199048 gctcggcgctgagacgatcc 2199029
to top
>gb|AE011797.1| Xanthomonas axonopodis pv. citri str. 306,  section 175 of 469 of the
            complete genome
          Length = 10238

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 70   gctcggcgctgagacgatcc 89
            ||||||||||||||||||||
Sbjct: 8206 gctcggcgctgagacgatcc 8187
to top
>gb|AC008180.15| Homo sapiens 3 BAC RP11-292L5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 193035

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    agatgggtaactttgggttg 365
              ||||||||||||||||||||
Sbjct: 182884 agatgggtaactttgggttg 182903
to top
>dbj|AK152727.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830083E10 product:AFG3(ATPase family gene
            3)-like 2 (yeast), full insert sequence
          Length = 3086

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 416  tggcatgaacgagaaattgg 435
            ||||||||||||||||||||
Sbjct: 2155 tggcatgaacgagaaattgg 2174
to top
>dbj|AK152115.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830047O12 product:AFG3(ATPase family gene
            3)-like 2 (yeast), full insert sequence
          Length = 3086

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 416  tggcatgaacgagaaattgg 435
            ||||||||||||||||||||
Sbjct: 2155 tggcatgaacgagaaattgg 2174
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 118      tcctcccttcccacccagca 137
                ||||||||||||||||||||
Sbjct: 11734463 tcctcccttcccacccagca 11734482
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 118      tcctcccttcccacccagca 137
                ||||||||||||||||||||
Sbjct: 17125002 tcctcccttcccacccagca 17124983
to top
>dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0075O18
          Length = 125411

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   tcctcccttcccacccagca 137
             ||||||||||||||||||||
Sbjct: 64163 tcctcccttcccacccagca 64182
to top
>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0571D04
          Length = 149302

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tcctcccttcccacccagca 137
             ||||||||||||||||||||
Sbjct: 78128 tcctcccttcccacccagca 78109
to top
>emb|AL669967.12| Mouse DNA sequence from clone RP23-216M21 on chromosome X, complete
             sequence
          Length = 219583

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ctccctccctctgctccccc 20
             ||||||||||||||||||||
Sbjct: 33590 ctccctccctctgctccccc 33571
to top
>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1705_A03
          Length = 168689

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   tcctcccttcccacccagca 137
             ||||||||||||||||||||
Sbjct: 12748 tcctcccttcccacccagca 12767
to top
>emb|AL772311.19| Mouse DNA sequence from clone RP23-87P16 on chromosome 4, complete
              sequence
          Length = 234393

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      ctccctccctctgctccccc 20
              ||||||||||||||||||||
Sbjct: 153712 ctccctccctctgctccccc 153693
to top
>gb|AC167132.12| Mus musculus chromosome 8, clone RP24-335A22, complete sequence
          Length = 203284

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     cctccctctgctcccccctg 23
             ||||||||||||||||||||
Sbjct: 55584 cctccctctgctcccccctg 55565


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,271,906
Number of Sequences: 3902068
Number of extensions: 4271906
Number of successful extensions: 104684
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104150
Number of HSP's gapped (non-prelim): 534
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top