ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast42c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475198.1| Oryza sativa (japonica cultivar-group), predic... 343 3e-91
2gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome... 343 3e-91
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 343 3e-91
4dbj|AK100181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 3e-91
5dbj|AK069649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 3e-91
6gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.37
7gb|AY242835.1| Bosea eneae strain 34614 RNA polymerase beta subu... 42 1.5
8dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.5
9gb|AC114425.14| Mus musculus chromosome 5, clone RP24-85B11, com... 42 1.5
10gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.7
11gb|AE010444.1| Methanopyrus kandleri AV19 section 143 of 157 of ... 40 5.7
12ref|NM_187876.1| Oryza sativa (japonica cultivar-group), Ozsa832... 40 5.7
13ref|XM_470532.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
14gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
15gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.7
16ref|XM_364284.1| Magnaporthe grisea 70-15 predicted protein (MG0... 40 5.7
17gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.7
18gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 5.7
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.7
20emb|CR658653.2|CNS0F76R Tetraodon nigroviridis full-length cDNA 40 5.7
21emb|BX927152.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 5.7
22emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.7
23emb|CR391919.5| Zebrafish DNA sequence from clone DKEY-174K18 in... 40 5.7
24ref|XM_681301.1| PREDICTED: Danio rerio similar to tripartite mo... 40 5.7
25gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.7
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
27dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
28dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 5.7
29gb|AC012363.6| Homo sapiens BAC clone RP11-438O12 from 2, comple... 40 5.7
30gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
31dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
32dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
33gb|AC007444.1|AC007444 Homo sapiens clone RP11-340F1 from 7p14-1... 40 5.7
34dbj|AK107553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
35dbj|AK107046.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
36emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.7 
>ref|XM_475198.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score =  343 bits (173), Expect = 3e-91
 Identities = 355/418 (84%)
 Strand = Plus / Plus

                                                                       
Query: 9   tggctctccgtgcccaaccccaccaacttcaccgacgacctcctcgcccgctggctcacg 68
           |||||||| |||||  ||||  |||||||||| || || ||| ||| ||| ||||| |||
Sbjct: 349 tggctctcagtgccggacccgtccaacttcacggaggagctcatcgaccggtggctgacg 408

                                                                       
Query: 69  cccgggggctcgccctgccgcgacgcccgcacggccaacatctccctcccggctcttgac 128
           ||||||||  | || ||||||||| |||| ||||| ||||||||| |||| | |||||||
Sbjct: 409 cccggggggactccgtgccgcgactcccgtacggcgaacatctccatccctgttcttgac 468

                                                                       
Query: 129 ggcgccgcggcggcggggggtgtgaccgagctgagcgccgccgagatttacgtgttcacc 188
           | ||||||||||||||| |  ||||||  |||| || ||||||||||  ||| |||||| 
Sbjct: 469 gacgccgcggcggcgggcgaggtgaccacgctgggctccgccgagatccacgagttcacg 528

                                                                       
Query: 189 ttctgggcgctcgacggcaccggcctgcggcgctgcctcggcggggacttcttcgagatt 248
           |||||||||||||||| | |||||| |||||||||||| |||||||||||||||||||| 
Sbjct: 529 ttctgggcgctcgacgacgccggccagcggcgctgccttggcggggacttcttcgagatc 588

                                                                       
Query: 249 gatctctccggggcggcgtggaagtcgcgnnnnnnngtcgtggacaacggcgacggctcc 308
           |||||| ||||||  | ||||||||||||       ||||||||| ||||||| ||||||
Sbjct: 589 gatctcgccggggacgagtggaagtcgcggccccccgtcgtggaccacggcgatggctcc 648

                                                                       
Query: 309 tacactttccgcctccaggttgcgccccgcttcgccgcgggggagttccgcctcaccatc 368
           ||| | |||||||||||||| ||||| |||||||||| |||||| |||||||||||||||
Sbjct: 649 tactccttccgcctccaggtcgcgccgcgcttcgccgagggggatttccgcctcaccatc 708

                                                                     
Query: 369 gtcctcctcttccgcagcttcgagggtctcaagttctcctccgcgaggttcaagtacc 426
            ||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||||
Sbjct: 709 atcctcctgttccgcagcttcgagggcctcaagttctcctccctgaggttcaagtacc 766
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>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0092G21, complete sequence
          Length = 151267

 Score =  343 bits (173), Expect = 3e-91
 Identities = 355/418 (84%)
 Strand = Plus / Minus

                                                                         
Query: 9     tggctctccgtgcccaaccccaccaacttcaccgacgacctcctcgcccgctggctcacg 68
             |||||||| |||||  ||||  |||||||||| || || ||| ||| ||| ||||| |||
Sbjct: 90840 tggctctcagtgccggacccgtccaacttcacggaggagctcatcgaccggtggctgacg 90781

                                                                         
Query: 69    cccgggggctcgccctgccgcgacgcccgcacggccaacatctccctcccggctcttgac 128
             ||||||||  | || ||||||||| |||| ||||| ||||||||| |||| | |||||||
Sbjct: 90780 cccggggggactccgtgccgcgactcccgtacggcgaacatctccatccctgttcttgac 90721

                                                                         
Query: 129   ggcgccgcggcggcggggggtgtgaccgagctgagcgccgccgagatttacgtgttcacc 188
             | ||||||||||||||| |  ||||||  |||| || ||||||||||  ||| |||||| 
Sbjct: 90720 gacgccgcggcggcgggcgaggtgaccacgctgggctccgccgagatccacgagttcacg 90661

                                                                         
Query: 189   ttctgggcgctcgacggcaccggcctgcggcgctgcctcggcggggacttcttcgagatt 248
             |||||||||||||||| | |||||| |||||||||||| |||||||||||||||||||| 
Sbjct: 90660 ttctgggcgctcgacgacgccggccagcggcgctgccttggcggggacttcttcgagatc 90601

                                                                         
Query: 249   gatctctccggggcggcgtggaagtcgcgnnnnnnngtcgtggacaacggcgacggctcc 308
             |||||| ||||||  | ||||||||||||       ||||||||| ||||||| ||||||
Sbjct: 90600 gatctcgccggggacgagtggaagtcgcggccccccgtcgtggaccacggcgatggctcc 90541

                                                                         
Query: 309   tacactttccgcctccaggttgcgccccgcttcgccgcgggggagttccgcctcaccatc 368
             ||| | |||||||||||||| ||||| |||||||||| |||||| |||||||||||||||
Sbjct: 90540 tactccttccgcctccaggtcgcgccgcgcttcgccgagggggatttccgcctcaccatc 90481

                                                                       
Query: 369   gtcctcctcttccgcagcttcgagggtctcaagttctcctccgcgaggttcaagtacc 426
              ||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||||
Sbjct: 90480 atcctcctgttccgcagcttcgagggcctcaagttctcctccctgaggttcaagtacc 90423
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  343 bits (173), Expect = 3e-91
 Identities = 355/418 (84%)
 Strand = Plus / Minus

                                                                            
Query: 9        tggctctccgtgcccaaccccaccaacttcaccgacgacctcctcgcccgctggctcacg 68
                |||||||| |||||  ||||  |||||||||| || || ||| ||| ||| ||||| |||
Sbjct: 19168942 tggctctcagtgccggacccgtccaacttcacggaggagctcatcgaccggtggctgacg 19168883

                                                                            
Query: 69       cccgggggctcgccctgccgcgacgcccgcacggccaacatctccctcccggctcttgac 128
                ||||||||  | || ||||||||| |||| ||||| ||||||||| |||| | |||||||
Sbjct: 19168882 cccggggggactccgtgccgcgactcccgtacggcgaacatctccatccctgttcttgac 19168823

                                                                            
Query: 129      ggcgccgcggcggcggggggtgtgaccgagctgagcgccgccgagatttacgtgttcacc 188
                | ||||||||||||||| |  ||||||  |||| || ||||||||||  ||| |||||| 
Sbjct: 19168822 gacgccgcggcggcgggcgaggtgaccacgctgggctccgccgagatccacgagttcacg 19168763

                                                                            
Query: 189      ttctgggcgctcgacggcaccggcctgcggcgctgcctcggcggggacttcttcgagatt 248
                |||||||||||||||| | |||||| |||||||||||| |||||||||||||||||||| 
Sbjct: 19168762 ttctgggcgctcgacgacgccggccagcggcgctgccttggcggggacttcttcgagatc 19168703

                                                                            
Query: 249      gatctctccggggcggcgtggaagtcgcgnnnnnnngtcgtggacaacggcgacggctcc 308
                |||||| ||||||  | ||||||||||||       ||||||||| ||||||| ||||||
Sbjct: 19168702 gatctcgccggggacgagtggaagtcgcggccccccgtcgtggaccacggcgatggctcc 19168643

                                                                            
Query: 309      tacactttccgcctccaggttgcgccccgcttcgccgcgggggagttccgcctcaccatc 368
                ||| | |||||||||||||| ||||| |||||||||| |||||| |||||||||||||||
Sbjct: 19168642 tactccttccgcctccaggtcgcgccgcgcttcgccgagggggatttccgcctcaccatc 19168583

                                                                          
Query: 369      gtcctcctcttccgcagcttcgagggtctcaagttctcctccgcgaggttcaagtacc 426
                 ||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||||
Sbjct: 19168582 atcctcctgttccgcagcttcgagggcctcaagttctcctccctgaggttcaagtacc 19168525



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 128      cggcgccgcggcggcggggg 147
                ||||||||||||||||||||
Sbjct: 14286217 cggcgccgcggcggcggggg 14286198
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>dbj|AK100181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030B10, full
           insert sequence
          Length = 2205

 Score =  343 bits (173), Expect = 3e-91
 Identities = 355/418 (84%)
 Strand = Plus / Plus

                                                                       
Query: 9   tggctctccgtgcccaaccccaccaacttcaccgacgacctcctcgcccgctggctcacg 68
           |||||||| |||||  ||||  |||||||||| || || ||| ||| ||| ||||| |||
Sbjct: 412 tggctctcagtgccggacccgtccaacttcacggaggagctcatcgaccggtggctgacg 471

                                                                       
Query: 69  cccgggggctcgccctgccgcgacgcccgcacggccaacatctccctcccggctcttgac 128
           ||||||||  | || ||||||||| |||| ||||| ||||||||| |||| | |||||||
Sbjct: 472 cccggggggactccgtgccgcgactcccgtacggcgaacatctccatccctgttcttgac 531

                                                                       
Query: 129 ggcgccgcggcggcggggggtgtgaccgagctgagcgccgccgagatttacgtgttcacc 188
           | ||||||||||||||| |  ||||||  |||| || ||||||||||  ||| |||||| 
Sbjct: 532 gacgccgcggcggcgggcgaggtgaccacgctgggctccgccgagatccacgagttcacg 591

                                                                       
Query: 189 ttctgggcgctcgacggcaccggcctgcggcgctgcctcggcggggacttcttcgagatt 248
           |||||||||||||||| | |||||| |||||||||||| |||||||||||||||||||| 
Sbjct: 592 ttctgggcgctcgacgacgccggccagcggcgctgccttggcggggacttcttcgagatc 651

                                                                       
Query: 249 gatctctccggggcggcgtggaagtcgcgnnnnnnngtcgtggacaacggcgacggctcc 308
           |||||| ||||||  | ||||||||||||       ||||||||| ||||||| ||||||
Sbjct: 652 gatctcgccggggacgagtggaagtcgcggccccccgtcgtggaccacggcgatggctcc 711

                                                                       
Query: 309 tacactttccgcctccaggttgcgccccgcttcgccgcgggggagttccgcctcaccatc 368
           ||| | |||||||||||||| ||||| |||||||||| |||||| |||||||||||||||
Sbjct: 712 tactccttccgcctccaggtcgcgccgcgcttcgccgagggggatttccgcctcaccatc 771

                                                                     
Query: 369 gtcctcctcttccgcagcttcgagggtctcaagttctcctccgcgaggttcaagtacc 426
            ||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||||
Sbjct: 772 atcctcctgttccgcagcttcgagggcctcaagttctcctccctgaggttcaagtacc 829
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>dbj|AK069649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030B11, full
           insert sequence
          Length = 2205

 Score =  343 bits (173), Expect = 3e-91
 Identities = 355/418 (84%)
 Strand = Plus / Plus

                                                                       
Query: 9   tggctctccgtgcccaaccccaccaacttcaccgacgacctcctcgcccgctggctcacg 68
           |||||||| |||||  ||||  |||||||||| || || ||| ||| ||| ||||| |||
Sbjct: 412 tggctctcagtgccggacccgtccaacttcacggaggagctcatcgaccggtggctgacg 471

                                                                       
Query: 69  cccgggggctcgccctgccgcgacgcccgcacggccaacatctccctcccggctcttgac 128
           ||||||||  | || ||||||||| |||| ||||| ||||||||| |||| | |||||||
Sbjct: 472 cccggggggactccgtgccgcgactcccgtacggcgaacatctccatccctgttcttgac 531

                                                                       
Query: 129 ggcgccgcggcggcggggggtgtgaccgagctgagcgccgccgagatttacgtgttcacc 188
           | ||||||||||||||| |  ||||||  |||| || ||||||||||  ||| |||||| 
Sbjct: 532 gacgccgcggcggcgggcgaggtgaccacgctgggctccgccgagatccacgagttcacg 591

                                                                       
Query: 189 ttctgggcgctcgacggcaccggcctgcggcgctgcctcggcggggacttcttcgagatt 248
           |||||||||||||||| | |||||| |||||||||||| |||||||||||||||||||| 
Sbjct: 592 ttctgggcgctcgacgacgccggccagcggcgctgccttggcggggacttcttcgagatc 651

                                                                       
Query: 249 gatctctccggggcggcgtggaagtcgcgnnnnnnngtcgtggacaacggcgacggctcc 308
           |||||| ||||||  | ||||||||||||       ||||||||| ||||||| ||||||
Sbjct: 652 gatctcgccggggacgagtggaagtcgcggccccccgtcgtggaccacggcgatggctcc 711

                                                                       
Query: 309 tacactttccgcctccaggttgcgccccgcttcgccgcgggggagttccgcctcaccatc 368
           ||| | |||||||||||||| ||||| |||||||||| |||||| |||||||||||||||
Sbjct: 712 tactccttccgcctccaggtcgcgccgcgcttcgccgagggggatttccgcctcaccatc 771

                                                                     
Query: 369 gtcctcctcttccgcagcttcgagggtctcaagttctcctccgcgaggttcaagtacc 426
            ||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||||
Sbjct: 772 atcctcctgttccgcagcttcgagggcctcaagttctcctccctgaggttcaagtacc 829
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 286     tcgtggacaacggcgacggctc 307
               ||||||||||||||||||||||
Sbjct: 3655983 tcgtggacaacggcgacggctc 3656004



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 197     gctcgacggcaccggcctgcg 217
               |||||||||||||||||||||
Sbjct: 3035305 gctcgacggcaccggcctgcg 3035325



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 128     cggcgccgcggcggcggggg 147
               ||||||||||||||||||||
Sbjct: 2037846 cggcgccgcggcggcggggg 2037865
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>gb|AY242835.1| Bosea eneae strain 34614 RNA polymerase beta subunit (rpoB) gene,
            complete cds
          Length = 4119

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  cgctgcctcggcggggacttc 239
            |||||||||||||||||||||
Sbjct: 4113 cgctgcctcggcggggacttc 4093
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 209     cggcctgcggcgctgcctcggcggg 233
               ||||||||||||| |||||||||||
Sbjct: 8487631 cggcctgcggcgcggcctcggcggg 8487655
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>gb|AC114425.14| Mus musculus chromosome 5, clone RP24-85B11, complete sequence
          Length = 208233

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 369   gtcctcctcttccgcagcttc 389
             |||||||||||||||||||||
Sbjct: 87824 gtcctcctcttccgcagcttc 87804
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 207     accggcctgcggcgctgcct 226
               ||||||||||||||||||||
Sbjct: 2641824 accggcctgcggcgctgcct 2641843
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>gb|AE010444.1| Methanopyrus kandleri AV19 section 143 of 157 of the complete genome
          Length = 7685

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  ccgagctgagcgccgccgag 173
            ||||||||||||||||||||
Sbjct: 5963 ccgagctgagcgccgccgag 5944
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>ref|NM_187876.1| Oryza sativa (japonica cultivar-group), Ozsa8320 predicted mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 123 cttgacggcgccgcggcggcgggg 146
           ||||||||||||| ||||||||||
Sbjct: 56  cttgacggcgccgtggcggcgggg 33
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>ref|XM_470532.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1335

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  tgacggcgccgcggcggcgg 144
            ||||||||||||||||||||
Sbjct: 1287 tgacggcgccgcggcggcgg 1306
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>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
             complete sequence
          Length = 117724

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   cggcgccgcggcggcggggg 147
             ||||||||||||||||||||
Sbjct: 15003 cggcgccgcggcggcggggg 14984
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    gcgccccgcttcgccgcggg 349
              ||||||||||||||||||||
Sbjct: 378136 gcgccccgcttcgccgcggg 378117
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>ref|XM_364284.1| Magnaporthe grisea 70-15 predicted protein (MG09129.4) partial mRNA
          Length = 3255

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 gtgaccgagctgagcgccgc 169
           ||||||||||||||||||||
Sbjct: 413 gtgaccgagctgagcgccgc 394
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 330     gcgccccgcttcgccgcggg 349
               ||||||||||||||||||||
Sbjct: 1108817 gcgccccgcttcgccgcggg 1108798
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 49     tcctcgcccgctggctcacgcccg 72
              |||| |||||||||||||||||||
Sbjct: 165355 tcctggcccgctggctcacgcccg 165378
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 125     tgacggcgccgcggcggcgg 144
               ||||||||||||||||||||
Sbjct: 4160411 tgacggcgccgcggcggcgg 4160430
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>emb|CR658653.2|CNS0F76R Tetraodon nigroviridis full-length cDNA
          Length = 1477

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 354  ttccgcctcaccatcgtcctcctcttcc 381
            |||||||||||| ||||| |||||||||
Sbjct: 1177 ttccgcctcaccctcgtcttcctcttcc 1150
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>emb|BX927152.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 5/10
          Length = 349799

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     caacttcaccgacgacctcc 51
              ||||||||||||||||||||
Sbjct: 343341 caacttcaccgacgacctcc 343322
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    gcgccccgcttcgccgcggg 349
              ||||||||||||||||||||
Sbjct: 989780 gcgccccgcttcgccgcggg 989761
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>emb|CR391919.5| Zebrafish DNA sequence from clone DKEY-174K18 in linkage group 1,
             complete sequence
          Length = 179764

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 288   gtggacaacggcgacggctcctac 311
             ||||||||| ||||||||||||||
Sbjct: 44423 gtggacaacagcgacggctcctac 44446
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>ref|XM_681301.1| PREDICTED: Danio rerio similar to tripartite motif-containing 45
            (LOC558117), mRNA
          Length = 1494

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 288  gtggacaacggcgacggctcctac 311
            ||||||||| ||||||||||||||
Sbjct: 1120 gtggacaacagcgacggctcctac 1143
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    cgctcgacggcaccggcctg 215
              ||||||||||||||||||||
Sbjct: 910524 cgctcgacggcaccggcctg 910543
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 125     tgacggcgccgcggcggcgg 144
               ||||||||||||||||||||
Sbjct: 4160520 tgacggcgccgcggcggcgg 4160539
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 123     cttgacggcgccgcggcggcgggg 146
               ||||||||||||| ||||||||||
Sbjct: 8393574 cttgacggcgccgtggcggcgggg 8393551
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 32      caacttcaccgacgacctcc 51
               ||||||||||||||||||||
Sbjct: 1737564 caacttcaccgacgacctcc 1737545
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>gb|AC012363.6| Homo sapiens BAC clone RP11-438O12 from 2, complete sequence
          Length = 217346

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    ttacgtgttcaccttctggg 195
              ||||||||||||||||||||
Sbjct: 213934 ttacgtgttcaccttctggg 213915
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>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0050H14, complete sequence
          Length = 142245

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   tgacggcgccgcggcggcgg 144
             ||||||||||||||||||||
Sbjct: 61048 tgacggcgccgcggcggcgg 61067
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>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0503G09
          Length = 59843

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 123   cttgacggcgccgcggcggcgggg 146
             ||||||||||||| ||||||||||
Sbjct: 58200 cttgacggcgccgtggcggcgggg 58177
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>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
            clone:P0705D01
          Length = 147174

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 123  cttgacggcgccgcggcggcgggg 146
            ||||||||||||| ||||||||||
Sbjct: 8529 cttgacggcgccgtggcggcgggg 8506
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>gb|AC007444.1|AC007444 Homo sapiens clone RP11-340F1 from 7p14-15, complete sequence
          Length = 156940

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 366   atcgtcctcctcttccgcagcttc 389
             ||||||||||||||| ||||||||
Sbjct: 68537 atcgtcctcctcttcagcagcttc 68514
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>dbj|AK107553.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A12, full
           insert sequence
          Length = 2054

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 cggcgccgcggcggcggggg 147
           ||||||||||||||||||||
Sbjct: 127 cggcgccgcggcggcggggg 146
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>dbj|AK107046.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C09, full
            insert sequence
          Length = 1820

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  tgacggcgccgcggcggcgg 144
            ||||||||||||||||||||
Sbjct: 1485 tgacggcgccgcggcggcgg 1504
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 155     cgagctgagcgccgccgaga 174
               ||||||||||||||||||||
Sbjct: 2430864 cgagctgagcgccgccgaga 2430883


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,977,282
Number of Sequences: 3902068
Number of extensions: 2977282
Number of successful extensions: 63715
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61977
Number of HSP's gapped (non-prelim): 1733
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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