| Clone Name | bast42c05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196678.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0016G17.7), mRNA Length = 1581 Score = 46.1 bits (23), Expect = 0.047 Identities = 23/23 (100%) Strand = Plus / Plus Query: 195 gcgggccgccgtcgtattcggag 217 ||||||||||||||||||||||| Sbjct: 761 gcgggccgccgtcgtattcggag 783
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17, complete sequence Length = 141041 Score = 46.1 bits (23), Expect = 0.047 Identities = 23/23 (100%) Strand = Plus / Minus Query: 195 gcgggccgccgtcgtattcggag 217 ||||||||||||||||||||||| Sbjct: 38642 gcgggccgccgtcgtattcggag 38620
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.047 Identities = 23/23 (100%) Strand = Plus / Minus Query: 195 gcgggccgccgtcgtattcggag 217 ||||||||||||||||||||||| Sbjct: 15184943 gcgggccgccgtcgtattcggag 15184921
>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11, complete sequence Length = 129420 Score = 46.1 bits (23), Expect = 0.047 Identities = 23/23 (100%) Strand = Plus / Minus Query: 195 gcgggccgccgtcgtattcggag 217 ||||||||||||||||||||||| Sbjct: 93556 gcgggccgccgtcgtattcggag 93534
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.047 Identities = 23/23 (100%) Strand = Plus / Minus Query: 195 gcgggccgccgtcgtattcggag 217 ||||||||||||||||||||||| Sbjct: 15193184 gcgggccgccgtcgtattcggag 15193162
>ref|XM_864639.1| PREDICTED: Bos taurus similar to jun D proto-oncogene, transcript variant 2 (LOC517192), mRNA Length = 2188 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 gccgcggccgcccgggggcccg 184 |||||||||||||||||||||| Sbjct: 80 gccgcggccgcccgggggcccg 59
>ref|XM_595359.2| PREDICTED: Bos taurus similar to jun D proto-oncogene, transcript variant 1 (LOC517192), mRNA Length = 1631 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 gccgcggccgcccgggggcccg 184 |||||||||||||||||||||| Sbjct: 80 gccgcggccgcccgggggcccg 59
>ref|XM_944939.1| PREDICTED: Homo sapiens chromosome 19 open reading frame 29, transcript variant 9 (C19orf29), mRNA Length = 3344 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 gcagccgcggccgcccgggggc 181 |||||||||||||||||||||| Sbjct: 445 gcagccgcggccgcccgggggc 424
>ref|XM_944935.1| PREDICTED: Homo sapiens chromosome 19 open reading frame 29, transcript variant 8 (C19orf29), mRNA Length = 3613 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 gcagccgcggccgcccgggggc 181 |||||||||||||||||||||| Sbjct: 445 gcagccgcggccgcccgggggc 424
>ref|XM_944932.1| PREDICTED: Homo sapiens chromosome 19 open reading frame 29, transcript variant 7 (C19orf29), mRNA Length = 2669 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 gcagccgcggccgcccgggggc 181 |||||||||||||||||||||| Sbjct: 445 gcagccgcggccgcccgggggc 424
>ref|XM_941007.1| PREDICTED: Homo sapiens chromosome 19 open reading frame 29, transcript variant 6 (C19orf29), mRNA Length = 2805 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 gcagccgcggccgcccgggggc 181 |||||||||||||||||||||| Sbjct: 445 gcagccgcggccgcccgggggc 424
>ref|XM_933019.1| PREDICTED: Homo sapiens chromosome 19 open reading frame 29, transcript variant 4 (C19orf29), mRNA Length = 3344 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 gcagccgcggccgcccgggggc 181 |||||||||||||||||||||| Sbjct: 445 gcagccgcggccgcccgggggc 424
>ref|XM_933013.1| PREDICTED: Homo sapiens chromosome 19 open reading frame 29, transcript variant 3 (C19orf29), mRNA Length = 3613 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 gcagccgcggccgcccgggggc 181 |||||||||||||||||||||| Sbjct: 445 gcagccgcggccgcccgggggc 424
>ref|XM_933009.1| PREDICTED: Homo sapiens chromosome 19 open reading frame 29, transcript variant 2 (C19orf29), mRNA Length = 2669 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 gcagccgcggccgcccgggggc 181 |||||||||||||||||||||| Sbjct: 445 gcagccgcggccgcccgggggc 424
>ref|XM_928631.1| PREDICTED: Homo sapiens chromosome 19 open reading frame 29, transcript variant 1 (C19orf29), mRNA Length = 2805 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 gcagccgcggccgcccgggggc 181 |||||||||||||||||||||| Sbjct: 445 gcagccgcggccgcccgggggc 424
>gb|AC005542.1|AC005542 Homo sapiens chromosome 19, cosmid R32516, complete sequence Length = 38209 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 160 gcagccgcggccgcccgggggc 181 |||||||||||||||||||||| Sbjct: 7546 gcagccgcggccgcccgggggc 7567
>gb|AC005175.1|AC005175 Homo sapiens chromosome 19, cosmid R31449, complete sequence Length = 41303 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 160 gcagccgcggccgcccgggggc 181 |||||||||||||||||||||| Sbjct: 40278 gcagccgcggccgcccgggggc 40299
>gb|AC011740.7| Homo sapiens BAC clone RP11-106G13 from 2, complete sequence Length = 168991 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 ggcgccggggcgcgggcgcctgcca 34 |||||||||||| |||||||||||| Sbjct: 70953 ggcgccggggcgggggcgcctgcca 70977
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 cggcgccggggcgcgggcgcc 29 ||||||||||||||||||||| Sbjct: 1920175 cggcgccggggcgcgggcgcc 1920195
>emb|AJ132828.1|SSI132828 Spermatozopsis similis mRNA for p210 protein, partial Length = 2028 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 ctcgccgcagccgcggccgcc 174 ||||||||||||||||||||| Sbjct: 906 ctcgccgcagccgcggccgcc 926
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 ccggggcgcgggcgcctgcca 34 ||||||||||||||||||||| Sbjct: 1153330 ccggggcgcgggcgcctgcca 1153350
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gcgccggggcgcgggcgcct 30 |||||||||||||||||||| Sbjct: 1643121 gcgccggggcgcgggcgcct 1643140 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gcgccggggcgcgggcgcct 30 |||||||||||||||||||| Sbjct: 868083 gcgccggggcgcgggcgcct 868102
>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence Length = 491611 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ccggggcgcgggcgcctgcc 33 |||||||||||||||||||| Sbjct: 357686 ccggggcgcgggcgcctgcc 357705
>ref|XM_470982.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 990 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 142 ctcccggcgttcctcgccgcagccgcggccgc 173 |||||||| ||||||||||| ||||| ||||| Sbjct: 127 ctcccggccttcctcgccgccgccgccgccgc 158
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tcgccgcagccgcggccgcc 174 |||||||||||||||||||| Sbjct: 1730913 tcgccgcagccgcggccgcc 1730894
>ref|NM_177045.2| Mus musculus coiled-coil and C2 domain containing 1B (Cc2d1b), mRNA Length = 3288 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gccgcggccgcccgggggcc 182 |||||||||||||||||||| Sbjct: 39 gccgcggccgcccgggggcc 58
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cggcgttcctcgccgcagcc 165 |||||||||||||||||||| Sbjct: 649855 cggcgttcctcgccgcagcc 649874
>dbj|AK148162.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370038P11 product:hypothetical protein, full insert sequence Length = 770 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gccgcggccgcccgggggcc 182 |||||||||||||||||||| Sbjct: 25 gccgcggccgcccgggggcc 44
>dbj|AK146601.1| Mus musculus 16 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920030N19 product:hypothetical C2 domain/C2 calcium/lipid-binding domain, CaLB containing protein, full insert sequence Length = 3305 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gccgcggccgcccgggggcc 182 |||||||||||||||||||| Sbjct: 57 gccgcggccgcccgggggcc 76
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cttcgccgcgccgacgacgt 80 |||||||||||||||||||| Sbjct: 1203684 cttcgccgcgccgacgacgt 1203703
>dbj|AK043839.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830039B04 product:hypothetical protein, full insert sequence Length = 3288 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gccgcggccgcccgggggcc 182 |||||||||||||||||||| Sbjct: 39 gccgcggccgcccgggggcc 58
>gb|AF322127.1|AF322127 Saccharum officinarum teosinte branched1 protein (tb1) gene, partial cds Length = 1071 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 ttcctcgccgcagccgcggccgcc 174 ||||||||||| |||||||||||| Sbjct: 374 ttcctcgccgcggccgcggccgcc 351
>gb|AF322121.1|AF322121 Cleistachne sorghoides teosinte branched1 protein (tb1) gene, partial cds Length = 1059 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 ttcctcgccgcagccgcggccgcc 174 ||||||||||| |||||||||||| Sbjct: 374 ttcctcgccgcggccgcggccgcc 351
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 142 ctcccggcgttcctcgccgcagccgcggccgc 173 |||||||| ||||||||||| ||||| ||||| Sbjct: 391691 ctcccggccttcctcgccgccgccgccgccgc 391722
>dbj|AK105953.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D04, full insert sequence Length = 1249 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 142 ctcccggcgttcctcgccgcagccgcggccgc 173 |||||||| ||||||||||| ||||| ||||| Sbjct: 194 ctcccggccttcctcgccgccgccgccgccgc 225
>dbj|AK072049.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110E20, full insert sequence Length = 1239 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 142 ctcccggcgttcctcgccgcagccgcggccgc 173 |||||||| ||||||||||| ||||| ||||| Sbjct: 196 ctcccggccttcctcgccgccgccgccgccgc 227
>dbj|AK068763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164G01, full insert sequence Length = 1240 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 142 ctcccggcgttcctcgccgcagccgcggccgc 173 |||||||| ||||||||||| ||||| ||||| Sbjct: 196 ctcccggccttcctcgccgccgccgccgccgc 227
>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23, complete sequence Length = 115972 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 142 ctcccggcgttcctcgccgcagccgcggccgc 173 |||||||| ||||||||||| ||||| ||||| Sbjct: 76350 ctcccggccttcctcgccgccgccgccgccgc 76381
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 142 ctcccggcgttcctcgccgcagccgcggccgc 173 |||||||| ||||||||||| ||||| ||||| Sbjct: 30443 ctcccggccttcctcgccgccgccgccgccgc 30474
>emb|AL626783.16| Mouse DNA sequence from clone RP23-406B13 on chromosome 4, complete sequence Length = 179370 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gccgcggccgcccgggggcc 182 |||||||||||||||||||| Sbjct: 138207 gccgcggccgcccgggggcc 138226 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,175,867 Number of Sequences: 3902068 Number of extensions: 1175867 Number of successful extensions: 123420 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 121375 Number of HSP's gapped (non-prelim): 2045 length of query: 225 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 203 effective length of database: 17,147,199,772 effective search space: 3480881553716 effective search space used: 3480881553716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)