ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast42c04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009588.1| Triticum aestivum clone wre1n.pk0051.b8:fis, full insert mRNA sequence Length = 588 Score = 509 bits (257), Expect = e-141 Identities = 347/376 (92%), Gaps = 2/376 (0%) Strand = Plus / Plus Query: 44 cgcactccttgtactgagccgtttctgtacaaga--tcacggccaagatgtcgtcgacgg 101 ||||||| |||| |||||||||||||| |||||| ||| ||| |||||||||||||||| Sbjct: 37 cgcactctttgtgctgagccgtttctgcacaagagatcatggcgaagatgtcgtcgacgg 96 Query: 102 ccaccgtcaccggcgccaaccccgagaacaagctcgccctcgccaaacgctgctccagag 161 ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 97 ccaccgtcacccgcgcccacctcgagaacaagctcgccctcgccaaacgctgctccagag 156 Query: 162 aggcgacgctcgccggagcaaaggcggcggccgtcgccacggtcgcgtctgcggcggcaa 221 |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| Sbjct: 157 aggcgacgctcgccggagcaaaggcggcggccatcgccaccgtcgcgtctgcggtcccaa 216 Query: 222 cgctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccagg 281 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 217 cgctggcgagcgtgaggatgctgccgtgggccaaggcgcacctgaaccccaccggccagg 276 Query: 282 ccctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatct 341 ||||| || ||||||| |||||||||||||| ||||||||||| || |||||| ||||| Sbjct: 277 ccctcgtcgtctgcaccgtcgccgggatggcatacttcgtcgcggcagacaaggccatcc 336 Query: 342 tgtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcct 401 |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct: 337 tgtcgctggcgaggaggcactcgtacgagagcgcccccgaccacctcaaggacacctcct 396 Query: 402 tccatggcaccgccgc 417 || |||| ||||||| Sbjct: 397 tcgctggcgccgccgc 412
>ref|XM_493727.2| Oryza sativa (japonica cultivar-group), mRNA Length = 657 Score = 252 bits (127), Expect = 9e-64 Identities = 244/283 (86%) Strand = Plus / Plus Query: 131 aagctcgccctcgccaaacgctgctccagagaggcgacgctcgccggagcaaaggcggcg 190 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 172 aagctcgccctcgcaaaacgctgctccagagaggcgacgctcgccggagccaaggcggcg 231 Query: 191 gccgtcgccacggtcgcgtctgcggcggcaacgctggcgagcgtgaggatgctgccgtgg 250 || || || ||||| || || || | | |||||||||||||||||||||||||||||| Sbjct: 232 gcggtggcgacggtggcatccgccgtcccgacgctggcgagcgtgaggatgctgccgtgg 291 Query: 251 gccaaggcgaacctgaaccccaccggccaggccctcatcatctgcactgtcgccgggatg 310 || ||||| ||| | ||||| || || ||||| || ||||||||||| | ||||||||| Sbjct: 292 gcgaaggccaacatcaacccgacgggacaggcgctgatcatctgcacggcggccgggatg 351 Query: 311 gcctacttcgtcgccgccgacaagaccatcttgtcgctggcgaggaggcactcatacgag 370 || |||||||||||||||||||||| ||| | |||||||||||||||||||| | |||| Sbjct: 352 gcatacttcgtcgccgccgacaagaagatcctctcgctggcgaggaggcactccttcgag 411 Query: 371 ggcgcccccgaccacctcaaggacacctccttccatggcaccg 413 ||| || || ||||||||| ||||||||||||| ||||||| Sbjct: 412 aacgcacctgaacacctcaagaacacctccttccagggcaccg 454
>dbj|AK121791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095D10, full insert sequence Length = 657 Score = 252 bits (127), Expect = 9e-64 Identities = 244/283 (86%) Strand = Plus / Plus Query: 131 aagctcgccctcgccaaacgctgctccagagaggcgacgctcgccggagcaaaggcggcg 190 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 172 aagctcgccctcgcaaaacgctgctccagagaggcgacgctcgccggagccaaggcggcg 231 Query: 191 gccgtcgccacggtcgcgtctgcggcggcaacgctggcgagcgtgaggatgctgccgtgg 250 || || || ||||| || || || | | |||||||||||||||||||||||||||||| Sbjct: 232 gcggtggcgacggtggcatccgccgtcccgacgctggcgagcgtgaggatgctgccgtgg 291 Query: 251 gccaaggcgaacctgaaccccaccggccaggccctcatcatctgcactgtcgccgggatg 310 || ||||| ||| | ||||| || || ||||| || ||||||||||| | ||||||||| Sbjct: 292 gcgaaggccaacattaacccgacgggacaggcgctgatcatctgcacggcggccgggatg 351 Query: 311 gcctacttcgtcgccgccgacaagaccatcttgtcgctggcgaggaggcactcatacgag 370 || |||||||||||||||||||||| ||| | |||||||||||||||||||| | |||| Sbjct: 352 gcatacttcgtcgccgccgacaagaagatcctctcgctggcgaggaggcactccttcgag 411 Query: 371 ggcgcccccgaccacctcaaggacacctccttccatggcaccg 413 ||| || || ||||||||| ||||||||||||| ||||||| Sbjct: 412 aacgcacctgaacacctcaagaacacctccttccagggcaccg 454
>ref|XM_493733.1| Oryza sativa (japonica cultivar-group), mRNA Length = 348 Score = 228 bits (115), Expect = 1e-56 Identities = 241/283 (85%) Strand = Plus / Plus Query: 131 aagctcgccctcgccaaacgctgctccagagaggcgacgctcgccggagcaaaggcggcg 190 |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 34 aagctcgcactcgccaagcgctgctccagagaggcgacgctcgccggagccaaggctgcg 93 Query: 191 gccgtcgccacggtcgcgtctgcggcggcaacgctggcgagcgtgaggatgctgccgtgg 250 || || || ||||| || || || | ||||| |||||||||||||||||||||| ||| Sbjct: 94 gcggtggcgacggtggcatccgccgtcccaacgttggcgagcgtgaggatgctgccatgg 153 Query: 251 gccaaggcgaacctgaaccccaccggccaggccctcatcatctgcactgtcgccgggatg 310 || ||||| ||| | ||||| || || ||||| || ||||||||||| | || |||||| Sbjct: 154 gcgaaggccaacatcaacccgacgggtcaggcgctgatcatctgcacggcggctgggatg 213 Query: 311 gcctacttcgtcgccgccgacaagaccatcttgtcgctggcgaggaggcactcatacgag 370 || |||||||||||||||||||||| ||| | ||||||||||||| |||||| | |||| Sbjct: 214 gcatacttcgtcgccgccgacaagaagatcctctcgctggcgaggaagcactcgttcgag 273 Query: 371 ggcgcccccgaccacctcaaggacacctccttccatggcaccg 413 ||||| || || ||||||||| ||||||||||||| ||||||| Sbjct: 274 ggcgcaccggagcacctcaagaacacctccttccagggcaccg 316
>gb|BT017267.1| Zea mays clone EL01N0310G10.c mRNA sequence Length = 643 Score = 204 bits (103), Expect = 2e-49 Identities = 238/283 (84%) Strand = Plus / Plus Query: 131 aagctcgccctcgccaaacgctgctccagagaggcgacgctcgccggagcaaaggcggcg 190 ||||| ||||||||||| ||||||||| |||||||||| || |||||||| |||||||| Sbjct: 71 aagcttgccctcgccaagcgctgctcccgagaggcgactcttgccggagctaaggcggca 130 Query: 191 gccgtcgccacggtcgcgtctgcggcggcaacgctggcgagcgtgaggatgctgccgtgg 250 || || || || |||| || ||| | || || ||||||||| |||||||||||||| Sbjct: 131 gcagtggcgactatcgcctccgcgattcccaccctcgcgagcgtgcggatgctgccgtgg 190 Query: 251 gccaaggcgaacctgaaccccaccggccaggccctcatcatctgcactgtcgccgggatg 310 |||||||| ||| | ||||||||||||||||| |||||| ||| ||| || ||||||||| Sbjct: 191 gccaaggccaacatcaaccccaccggccaggcgctcatcgtctccacggtggccgggatg 250 Query: 311 gcctacttcgtcgccgccgacaagaccatcttgtcgctggcgaggaggcactcatacgag 370 ||||||||| ||||||||||||||| ||| |||||||||||||| | ||||| | |||| Sbjct: 251 gcctacttcatcgccgccgacaagaagatcctgtcgctggcgaggcgccactcgttcgag 310 Query: 371 ggcgcccccgaccacctcaaggacacctccttccatggcaccg 413 | || || || ||||||||| ||||||||||||| ||||||| Sbjct: 311 gaagctccggatcacctcaagaacacctccttccagggcaccg 353
>gb|AY103794.1| Zea mays PCO108429 mRNA sequence Length = 777 Score = 188 bits (95), Expect = 1e-44 Identities = 236/283 (83%) Strand = Plus / Plus Query: 131 aagctcgccctcgccaaacgctgctccagagaggcgacgctcgccggagcaaaggcggcg 190 ||||||||||||||||| || |||||| |||||||||| ||||||||||| |||||||| Sbjct: 167 aagctcgccctcgccaagcgttgctcccgagaggcgaccctcgccggagccaaggcggca 226 Query: 191 gccgtcgccacggtcgcgtctgcggcggcaacgctggcgagcgtgaggatgctgccgtgg 250 || || || || |||| || ||| | || ||||| |||||| |||||||||| ||| Sbjct: 227 gcggtggcgactatcgcctccgcgatccccaccctggccagcgtgcggatgctgccatgg 286 Query: 251 gccaaggcgaacctgaaccccaccggccaggccctcatcatctgcactgtcgccgggatg 310 |||||||| ||| | ||||||||||||||||| |||||| ||| ||| || || |||||| Sbjct: 287 gccaaggccaacatcaaccccaccggccaggcgctcatcgtctccacggtggctgggatg 346 Query: 311 gcctacttcgtcgccgccgacaagaccatcttgtcgctggcgaggaggcactcatacgag 370 ||||||||| ||||||||||||||| ||| |||||||||| ||| | ||||| | |||| Sbjct: 347 gcctacttcatcgccgccgacaagaagatcctgtcgctggcaaggcgccactcgttcgag 406 Query: 371 ggcgcccccgaccacctcaaggacacctccttccatggcaccg 413 ||||| || ||||||||| ||||||||||||| ||||||| Sbjct: 407 caagcccctgagcacctcaagaacacctccttccagggcaccg 449
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 172 bits (87), Expect = 7e-40 Identities = 165/191 (86%) Strand = Plus / Minus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 |||||||||||||||||||||||||||||| ||||| ||| | ||||| || || ||||| Sbjct: 2179635 gctggcgagcgtgaggatgctgccgtgggcgaaggccaacatcaacccgacgggacaggc 2179576 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 2179575 gctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcct 2179516 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||||||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 2179515 ctcgctggcgaggaggcactccttcgagaacgcacctgaacacctcaagaacacctcctt 2179456 Query: 403 ccatggcaccg 413 ||| ||||||| Sbjct: 2179455 ccagggcaccg 2179445 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Minus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 |||||||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 2198872 gctggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacggggcaggc 2198813 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 2198812 gctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcct 2198753 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||||||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 2198752 ctcgctggcgaggaggcactccttcgagaacgcacctgaacacctcaagaacacctcctt 2198693 Query: 403 ccatggcaccg 413 ||| ||||||| Sbjct: 2198692 ccagggcaccg 2198682 Score = 161 bits (81), Expect = 3e-36 Identities = 162/189 (85%) Strand = Plus / Minus Query: 225 tggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggccc 284 |||||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| | Sbjct: 2205081 tggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacgggtcaggcgc 2205022 Query: 285 tcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatcttgt 344 | ||||||||||| | || |||||||| |||||||||||||||||||||| ||| | | Sbjct: 2205021 tgatcatctgcacggcggctgggatggcatacttcgtcgccgccgacaagaagatcctct 2204962 Query: 345 cgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctccttcc 404 |||||||||||| |||||| | ||||||||| || || ||||||||| |||||||||||| Sbjct: 2204961 cgctggcgaggaagcactcgttcgagggcgcaccggagcacctcaagaacacctccttcc 2204902 Query: 405 atggcaccg 413 | ||||||| Sbjct: 2204901 agggcaccg 2204893 Score = 157 bits (79), Expect = 4e-35 Identities = 157/183 (85%) Strand = Plus / Minus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 |||||||||||||||||||||||| ||||| ||||||||| | ||||| || || ||||| Sbjct: 2212005 gctggcgagcgtgaggatgctgccatgggcgaaggcgaacatcaacccgacggggcaggc 2211946 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||| ||||||||||||| ||| | Sbjct: 2211945 gctgatcatctgcacggcggccgggatggcatacttcgtggccgccgacaagaagatcct 2211886 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||||||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 2211885 ctcgctggcgaggaggcactccttcgagaacgcaccggagcacctcaagaacacctcctt 2211826 Query: 403 cca 405 ||| Sbjct: 2211825 cca 2211823 Score = 157 bits (79), Expect = 4e-35 Identities = 163/191 (85%) Strand = Plus / Minus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 |||||||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 2208086 gctggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacggggcaggc 2208027 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 2208026 gctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcct 2207967 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||| ||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 2207966 ctcgctggccaggaggcactccttcgagaacgcacctgaacacctcaagaacacctcctt 2207907 Query: 403 ccatggcaccg 413 ||| ||||||| Sbjct: 2207906 ccagggcaccg 2207896 Score = 149 bits (75), Expect = 1e-32 Identities = 162/191 (84%) Strand = Plus / Minus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 ||||||||||||||||||| |||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 2175417 gctggcgagcgtgaggatggtgccatgggcgaaggccaacatcaacccgacgggacaggc 2175358 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 2175357 gctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcct 2175298 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||| ||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 2175297 ctcgctggccaggaggcactccttcgagaacgcacctgaacacctcaagaacacctcctt 2175238 Query: 403 ccatggcaccg 413 ||| ||||||| Sbjct: 2175237 ccagggcaccg 2175227 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 160 agaggcgacgctcgccggagcaaaggcggcggc 192 ||||||||||||||||||||| ||||||||||| Sbjct: 2179799 agaggcgacgctcgccggagccaaggcggcggc 2179767 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 131 aagctcgccctcgccaaacgctgctccagag 161 |||||||||||||| |||||||||||||||| Sbjct: 2179937 aagctcgccctcgcaaaacgctgctccagag 2179907 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 160 agaggcgacgctcgccggagcaaaggcggcggc 192 ||||||||||||||||||||| ||||| ||||| Sbjct: 2205240 agaggcgacgctcgccggagccaaggctgcggc 2205208 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 131 aagctcgccctcgccaaacgctgctccagag 161 |||||||| |||||||| ||||||||||||| Sbjct: 2205355 aagctcgcactcgccaagcgctgctccagag 2205325 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 133 gctcgccctcgccaaacgctgctcc 157 ||||||||||||||| ||||||||| Sbjct: 2208400 gctcgccctcgccaagcgctgctcc 2208376 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 gctcgccctcgccaaacgctgctc 156 ||||||||||||||| |||||||| Sbjct: 2199259 gctcgccctcgccaagcgctgctc 2199236
>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0535G04 Length = 154180 Score = 172 bits (87), Expect = 7e-40 Identities = 165/191 (86%) Strand = Plus / Minus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 |||||||||||||||||||||||||||||| ||||| ||| | ||||| || || ||||| Sbjct: 39092 gctggcgagcgtgaggatgctgccgtgggcgaaggccaacatcaacccgacgggacaggc 39033 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 39032 gctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcct 38973 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||||||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 38972 ctcgctggcgaggaggcactccttcgagaacgcacctgaacacctcaagaacacctcctt 38913 Query: 403 ccatggcaccg 413 ||| ||||||| Sbjct: 38912 ccagggcaccg 38902 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Minus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 |||||||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 58329 gctggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacggggcaggc 58270 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 58269 gctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcct 58210 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||||||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 58209 ctcgctggcgaggaggcactccttcgagaacgcacctgaacacctcaagaacacctcctt 58150 Query: 403 ccatggcaccg 413 ||| ||||||| Sbjct: 58149 ccagggcaccg 58139 Score = 161 bits (81), Expect = 3e-36 Identities = 162/189 (85%) Strand = Plus / Minus Query: 225 tggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggccc 284 |||||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| | Sbjct: 64538 tggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacgggtcaggcgc 64479 Query: 285 tcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatcttgt 344 | ||||||||||| | || |||||||| |||||||||||||||||||||| ||| | | Sbjct: 64478 tgatcatctgcacggcggctgggatggcatacttcgtcgccgccgacaagaagatcctct 64419 Query: 345 cgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctccttcc 404 |||||||||||| |||||| | ||||||||| || || ||||||||| |||||||||||| Sbjct: 64418 cgctggcgaggaagcactcgttcgagggcgcaccggagcacctcaagaacacctccttcc 64359 Query: 405 atggcaccg 413 | ||||||| Sbjct: 64358 agggcaccg 64350 Score = 157 bits (79), Expect = 4e-35 Identities = 157/183 (85%) Strand = Plus / Minus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 |||||||||||||||||||||||| ||||| ||||||||| | ||||| || || ||||| Sbjct: 71462 gctggcgagcgtgaggatgctgccatgggcgaaggcgaacatcaacccgacggggcaggc 71403 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||| ||||||||||||| ||| | Sbjct: 71402 gctgatcatctgcacggcggccgggatggcatacttcgtggccgccgacaagaagatcct 71343 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||||||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 71342 ctcgctggcgaggaggcactccttcgagaacgcaccggagcacctcaagaacacctcctt 71283 Query: 403 cca 405 ||| Sbjct: 71282 cca 71280 Score = 157 bits (79), Expect = 4e-35 Identities = 163/191 (85%) Strand = Plus / Minus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 |||||||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 67543 gctggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacggggcaggc 67484 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 67483 gctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcct 67424 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||| ||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 67423 ctcgctggccaggaggcactccttcgagaacgcacctgaacacctcaagaacacctcctt 67364 Query: 403 ccatggcaccg 413 ||| ||||||| Sbjct: 67363 ccagggcaccg 67353 Score = 149 bits (75), Expect = 1e-32 Identities = 162/191 (84%) Strand = Plus / Minus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 ||||||||||||||||||| |||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 34874 gctggcgagcgtgaggatggtgccatgggcgaaggccaacatcaacccgacgggacaggc 34815 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 34814 gctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcct 34755 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||| ||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 34754 ctcgctggccaggaggcactccttcgagaacgcacctgaacacctcaagaacacctcctt 34695 Query: 403 ccatggcaccg 413 ||| ||||||| Sbjct: 34694 ccagggcaccg 34684 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 160 agaggcgacgctcgccggagcaaaggcggcggc 192 ||||||||||||||||||||| ||||||||||| Sbjct: 39256 agaggcgacgctcgccggagccaaggcggcggc 39224 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 131 aagctcgccctcgccaaacgctgctccagag 161 |||||||||||||| |||||||||||||||| Sbjct: 39394 aagctcgccctcgcaaaacgctgctccagag 39364 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 160 agaggcgacgctcgccggagcaaaggcggcggc 192 ||||||||||||||||||||| ||||| ||||| Sbjct: 64697 agaggcgacgctcgccggagccaaggctgcggc 64665 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 131 aagctcgccctcgccaaacgctgctccagag 161 |||||||| |||||||| ||||||||||||| Sbjct: 64812 aagctcgcactcgccaagcgctgctccagag 64782 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 133 gctcgccctcgccaaacgctgctcc 157 ||||||||||||||| ||||||||| Sbjct: 67857 gctcgccctcgccaagcgctgctcc 67833 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 gctcgccctcgccaaacgctgctc 156 ||||||||||||||| |||||||| Sbjct: 58716 gctcgccctcgccaagcgctgctc 58693
>ref|XM_493734.1| Oryza sativa (japonica cultivar-group), mRNA Length = 351 Score = 168 bits (85), Expect = 1e-38 Identities = 232/281 (82%) Strand = Plus / Plus Query: 133 gctcgccctcgccaaacgctgctccagagaggcgacgctcgccggagcaaaggcggcggc 192 ||||||||||||||| ||||||||| | ||||||| || || || | |||||||| || Sbjct: 39 gctcgccctcgccaagcgctgctcccgggaggcgaaccttgcaggggttaaggcggctgc 98 Query: 193 cgtcgccacggtcgcgtctgcggcggcaacgctggcgagcgtgaggatgctgccgtgggc 252 ||||| || |||| ||||| | |||| ||||||||||||||||||||||| ||||| Sbjct: 99 tgtcgcgaccatcgcctctgccgttccaaccctggcgagcgtgaggatgctgccatgggc 158 Query: 253 caaggcgaacctgaaccccaccggccaggccctcatcatctgcactgtcgccgggatggc 312 ||||| ||| | ||||| || || ||||| || ||||||||||| | ||||||||||| Sbjct: 159 gaaggccaacatcaacccgacggggcaggcgctgatcatctgcacggcggccgggatggc 218 Query: 313 ctacttcgtcgccgccgacaagaccatcttgtcgctggcgaggaggcactcatacgaggg 372 |||||||||||||||||||||| ||| | |||||||| ||||||||||| | |||| Sbjct: 219 atacttcgtcgccgccgacaagaagatcctctcgctggccaggaggcactccttcgagaa 278 Query: 373 cgcccccgaccacctcaaggacacctccttccatggcaccg 413 ||| || || ||||||||| ||||||||||||| ||||||| Sbjct: 279 cgcacctgaacacctcaagaacacctccttccagggcaccg 319
>gb|BT016319.1| Zea mays clone Contig152 mRNA sequence Length = 847 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Plus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 |||||| |||||| |||||||||| ||||||||||| ||| | ||||||||||||||||| Sbjct: 360 gctggccagcgtgcggatgctgccatgggccaaggccaacatcaaccccaccggccaggc 419 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 |||||| ||| ||| || || ||||||||||||||| ||||||||||||||| ||| | Sbjct: 420 gctcatcgtctccacggtggctgggatggcctacttcatcgccgccgacaagaagatcct 479 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 ||||||||||||| | ||||| | |||| ||||| || ||||||||| |||||||||| Sbjct: 480 gtcgctggcgaggcgccactcgttcgagcaagcccctgagcacctcaagaacacctcctt 539 Query: 403 ccatggcaccg 413 ||| ||||||| Sbjct: 540 ccagggcaccg 550 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 160 agaggcgacgctcgccggagcaaaggcggcggccgt 195 ||||||||| ||||||||||| |||||||| ||||| Sbjct: 207 agaggcgaccctcgccggagccaaggcggcagccgt 242 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 131 aagctcgccctcgccaaacgctgctcc 157 ||||||||||||||||| ||||||||| Sbjct: 50 aagctcgccctcgccaagcgctgctcc 76
>dbj|AK105832.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E08, full insert sequence Length = 526 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Plus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 |||||||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 7 gctggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacggggcaggc 66 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 67 gctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcct 126 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||||||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 127 ctcgctggcgaggaggcactccttcgagaacgcacctgaacacctcaagaacacctcctt 186 Query: 403 ccatggcaccg 413 ||| ||||||| Sbjct: 187 ccagggcaccg 197
>dbj|AB018375.1| Oryza sativa (japonica cultivar-group) OsENOD93a gene for early nodulin, complete cds Length = 3911 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Plus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 |||||||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 2549 gctggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacggggcaggc 2608 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 2609 gctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcct 2668 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||||||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 2669 ctcgctggcgaggaggcactccttcgagaacgcacctgaacacctcaagaacacctcctt 2728 Query: 403 ccatggcaccg 413 ||| ||||||| Sbjct: 2729 ccagggcaccg 2739 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 gctcgccctcgccaaacgctgctc 156 ||||||||||||||| |||||||| Sbjct: 2162 gctcgccctcgccaagcgctgctc 2185
>ref|XM_493732.2| Oryza sativa (japonica cultivar-group), mRNA Length = 794 Score = 163 bits (82), Expect = 7e-37 Identities = 163/190 (85%) Strand = Plus / Plus Query: 224 ctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggcc 283 ||||||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 292 ctggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacggggcaggcg 351 Query: 284 ctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatcttg 343 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 352 ctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcctc 411 Query: 344 tcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctccttc 403 |||||||||||||||||||| | |||| ||| || || ||||||||| ||||||||||| Sbjct: 412 tcgctggcgaggaggcactccttcgagaacgcacctgaacacctcaagaacacctccttc 471 Query: 404 catggcaccg 413 || ||||||| Sbjct: 472 cagggcaccg 481 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 gctcgccctcgccaaacgctgctc 156 ||||||||||||||| |||||||| Sbjct: 201 gctcgccctcgccaagcgctgctc 224
>dbj|AK122162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147G13, full insert sequence Length = 794 Score = 163 bits (82), Expect = 7e-37 Identities = 163/190 (85%) Strand = Plus / Plus Query: 224 ctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggcc 283 ||||||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 292 ctggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacggggcaggcg 351 Query: 284 ctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatcttg 343 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 352 ctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcctc 411 Query: 344 tcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctccttc 403 |||||||||||||||||||| | |||| ||| || || ||||||||| ||||||||||| Sbjct: 412 tcgctggcgaggaggcactccttcgagaacgcacctgaacacctcaagaacacctccttc 471 Query: 404 catggcaccg 413 || ||||||| Sbjct: 472 cagggcaccg 481 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 gctcgccctcgccaaacgctgctc 156 ||||||||||||||| |||||||| Sbjct: 201 gctcgccctcgccaagcgctgctc 224
>dbj|AB018376.1| Oryza sativa (japonica cultivar-group) OsENOD93a mRNA for early nodulin, complete cds Length = 802 Score = 163 bits (82), Expect = 7e-37 Identities = 163/190 (85%) Strand = Plus / Plus Query: 224 ctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggcc 283 ||||||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 280 ctggcgagcgtgaggatgctgccatgggcgaaggccaacatcaacccgacggggcaggcg 339 Query: 284 ctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatcttg 343 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 340 ctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcctc 399 Query: 344 tcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctccttc 403 |||||||||||||||||||| | |||| ||| || || ||||||||| ||||||||||| Sbjct: 400 tcgctggcgaggaggcactccttcgagaacgcacctgaacacctcaagaacacctccttc 459 Query: 404 catggcaccg 413 || ||||||| Sbjct: 460 cagggcaccg 469 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 gctcgccctcgccaaacgctgctc 156 ||||||||||||||| |||||||| Sbjct: 189 gctcgccctcgccaagcgctgctc 212
>ref|XM_493726.1| Oryza sativa (japonica cultivar-group), mRNA Length = 351 Score = 161 bits (81), Expect = 3e-36 Identities = 228/277 (82%) Strand = Plus / Plus Query: 137 gccctcgccaaacgctgctccagagaggcgacgctcgccggagcaaaggcggcggccgtc 196 ||||||||||| ||||||||||| ||||||| || || || | |||||||| || ||| Sbjct: 43 gccctcgccaagcgctgctccagggaggcgaaccttgcaggggttaaggcggctgctgtc 102 Query: 197 gccacggtcgcgtctgcggcggcaacgctggcgagcgtgaggatgctgccgtgggccaag 256 || || |||| ||||| | |||| |||||||||||||||||| |||| ||||| ||| Sbjct: 103 gcgaccatcgcctctgccgttccaaccctggcgagcgtgaggatggtgccatgggcgaag 162 Query: 257 gcgaacctgaaccccaccggccaggccctcatcatctgcactgtcgccgggatggcctac 316 || ||| | ||||| || || ||||| || ||||||||||| | ||||||||||| ||| Sbjct: 163 gccaacatcaacccgacgggacaggcgctgatcatctgcacggcggccgggatggcatac 222 Query: 317 ttcgtcgccgccgacaagaccatcttgtcgctggcgaggaggcactcatacgagggcgcc 376 ||||||||||||||||||| ||| | |||||||| ||||||||||| | |||| ||| Sbjct: 223 ttcgtcgccgccgacaagaagatcctctcgctggccaggaggcactccttcgagaacgca 282 Query: 377 cccgaccacctcaaggacacctccttccatggcaccg 413 || || ||||||||| ||||||||||||| ||||||| Sbjct: 283 cctgaacacctcaagaacacctccttccagggcaccg 319
>ref|XM_493735.1| Oryza sativa (japonica cultivar-group), mRNA Length = 348 Score = 157 bits (79), Expect = 4e-35 Identities = 160/187 (85%) Strand = Plus / Plus Query: 219 caacgctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggcc 278 |||| ||||||||||||||||||||||| ||||| ||||||||| | ||||| || || | Sbjct: 122 caaccctggcgagcgtgaggatgctgccatgggcgaaggcgaacatcaacccgacggggc 181 Query: 279 aggccctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagacca 338 |||| || ||||||||||| | ||||||||||| |||||||| ||||||||||||| | Sbjct: 182 aggcgctgatcatctgcacggcggccgggatggcatacttcgtggccgccgacaagaaga 241 Query: 339 tcttgtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacct 398 || | |||||||||||||||||||| | |||| ||| || || ||||||||| |||||| Sbjct: 242 tcctctcgctggcgaggaggcactccttcgagaacgcaccggagcacctcaagaacacct 301 Query: 399 ccttcca 405 ||||||| Sbjct: 302 ccttcca 308
>gb|BT016307.1| Zea mays clone Contig140 mRNA sequence Length = 620 Score = 155 bits (78), Expect = 2e-34 Identities = 210/254 (82%) Strand = Plus / Plus Query: 160 agaggcgacgctcgccggagcaaaggcggcggccgtcgccacggtcgcgtctgcggcggc 219 ||||||||| ||||||||||| |||||||| |||| || || |||| || ||| | Sbjct: 10 agaggcgaccctcgccggagccaaggcggcagccgcggcgactatcgcctccgcgatccc 69 Query: 220 aacgctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggcca 279 || ||||| |||||| |||||||||| ||||||||||| ||| | |||||||||||||| Sbjct: 70 caccctggccagcgtgcggatgctgccatgggccaaggccaacatcaaccccaccggcca 129 Query: 280 ggccctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccat 339 ||| |||||| ||| ||| || || |||||||| |||||| ||||||||||||||| || Sbjct: 130 ggcgctcatcgtctccacggtggctgggatggcatacttcatcgccgccgacaagaagat 189 Query: 340 cttgtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctc 399 | |||||||||||||| | ||||| | |||| ||||| || ||||||||| ||||||| Sbjct: 190 cctgtcgctggcgaggcgccactcgttcgagcaagcccctgagcacctcaagaacacctc 249 Query: 400 cttccatggcaccg 413 |||||| ||||||| Sbjct: 250 cttccagggcaccg 263
>dbj|AK059772.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H12, full insert sequence Length = 1019 Score = 149 bits (75), Expect = 1e-32 Identities = 162/191 (84%) Strand = Plus / Plus Query: 223 gctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggc 282 ||||||||||||||||||| |||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 502 gctggcgagcgtgaggatggtgccatgggcgaaggccaacatcaacccgacgggacaggc 561 Query: 283 cctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatctt 342 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 562 gctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcct 621 Query: 343 gtcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctcctt 402 |||||||| ||||||||||| | |||| ||| || || ||||||||| |||||||||| Sbjct: 622 ctcgctggccaggaggcactccttcgagaacgcacctgaacacctcaagaacacctcctt 681 Query: 403 ccatggcaccg 413 ||| ||||||| Sbjct: 682 ccagggcaccg 692
>gb|AF140229.1|AF140229 Oryza sativa early nodulin mRNA, partial cds Length = 410 Score = 141 bits (71), Expect = 2e-30 Identities = 149/175 (85%) Strand = Plus / Plus Query: 224 ctggcgagcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggcc 283 ||||||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| Sbjct: 234 ctggcgagcgtgaggatgctgccatgggcaaaggccaacatcaacccgacggggcaggcg 293 Query: 284 ctcatcatctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatcttg 343 || ||||||||||| | ||||||||||| |||||||||||||||||||||| ||| | Sbjct: 294 ctgatcatctgcacggcggccgggatggcatacttcgtcgccgccgacaagaagatcctc 353 Query: 344 tcgctggcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacct 398 |||||||||||||||||||| | |||| ||| || || ||||||||| |||||| Sbjct: 354 tcgctggcgaggaggcactccttcgagaacgcacctgaacacctcaagaacacct 408 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 gctcgccctcgccaaacgctgctc 156 ||||||||||||||| |||||||| Sbjct: 143 gctcgccctcgccaagcgctgctc 166
>gb|BT017563.1| Zea mays clone EL01N0425G09.c mRNA sequence Length = 702 Score = 127 bits (64), Expect = 4e-26 Identities = 154/184 (83%) Strand = Plus / Plus Query: 230 agcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggccctcatc 289 ||||| ||||||||||| ||||||||||| ||| | |||||| | ||||||||||||||| Sbjct: 203 agcgtcaggatgctgccatgggccaaggccaacatcaaccccgctggccaggccctcatc 262 Query: 290 atctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatcttgtcgctg 349 ||| ||| || || || ||||| |||||| |||| || ||||||| ||| | |||||| Sbjct: 263 gtctccacagttgctggcatggcgtacttcatcgcggcggacaagaagatcctctcgctg 322 Query: 350 gcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctccttccatggc 409 |||||| |||||| |||||| ||| || || ||||||||||||||||||||||| ||| Sbjct: 323 gcgaggcagcactcgtacgagaacgcgccggagcacctcaaggacacctccttccagggc 382 Query: 410 accg 413 |||| Sbjct: 383 accg 386
>gb|BT016892.1| Zea mays clone Contig725 mRNA sequence Length = 642 Score = 127 bits (64), Expect = 4e-26 Identities = 154/184 (83%) Strand = Plus / Plus Query: 230 agcgtgaggatgctgccgtgggccaaggcgaacctgaaccccaccggccaggccctcatc 289 ||||| ||||||||||| ||||||||||| ||| | |||||| | ||||||||||||||| Sbjct: 164 agcgtcaggatgctgccatgggccaaggccaacatcaaccccgctggccaggccctcatc 223 Query: 290 atctgcactgtcgccgggatggcctacttcgtcgccgccgacaagaccatcttgtcgctg 349 ||| ||| || || || ||||| |||||| |||| || ||||||| ||| | |||||| Sbjct: 224 gtctccacagttgctggcatggcgtacttcatcgcggcggacaagaagatcctctcgctg 283 Query: 350 gcgaggaggcactcatacgagggcgcccccgaccacctcaaggacacctccttccatggc 409 |||||| |||||| |||||| ||| || || ||||||||||||||||||||||| ||| Sbjct: 284 gcgaggcagcactcgtacgagaacgcgccggagcacctcaaggacacctccttccagggc 343 Query: 410 accg 413 |||| Sbjct: 344 accg 347
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 94 gtcgacggccaccgtcaccggc 115 |||||||||||||||||||||| Sbjct: 2602605 gtcgacggccaccgtcaccggc 2602626
>gb|AE005002.1| Halobacterium sp. NRC-1 section 33 of 170 of the complete genome Length = 11214 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 365 tacgagggcgcccccgaccacc 386 |||||||||||||||||||||| Sbjct: 1103 tacgagggcgcccccgaccacc 1124
>gb|AC117734.13| Mus musculus chromosome 1, clone RP24-130L9, complete sequence Length = 167235 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 276 gccaggccctcatcatctgcactgt 300 |||||||| |||||||||||||||| Sbjct: 122312 gccaggccttcatcatctgcactgt 122336
>gb|AC126441.5| Mus musculus BAC clone RP23-431D8 from chromosome 7, complete sequence Length = 220308 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 ccacctcaaggacacctcctt 402 ||||||||||||||||||||| Sbjct: 158620 ccacctcaaggacacctcctt 158640
>gb|AC159973.2| Mus musculus chromosome 1, clone RP24-207D15, complete sequence Length = 136567 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 276 gccaggccctcatcatctgcactgt 300 |||||||| |||||||||||||||| Sbjct: 32450 gccaggccttcatcatctgcactgt 32474
>emb|AJ307670.1|MMU307670 Mus musculus St5 gene, L27a gene and Kiaa0298 gene Length = 202748 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ccacctcaaggacacctcctt 402 ||||||||||||||||||||| Sbjct: 26508 ccacctcaaggacacctcctt 26488
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 319 cgtcgccgccgacaagaccat 339 ||||||||||||||||||||| Sbjct: 134457 cgtcgccgccgacaagaccat 134477
>gb|AE005730.1| Caulobacter crescentus CB15 section 56 of 359 of the complete genome Length = 14506 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 gcggccgtcgccacggtcgcg 208 ||||||||||||||||||||| Sbjct: 10941 gcggccgtcgccacggtcgcg 10961
>gb|AY666013.1| Triticum aestivum cold acclimation induced protein 2-1 mRNA, complete cds Length = 1243 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 cctccttccatggcaccgccg 416 ||||||||||||||||||||| Sbjct: 801 cctccttccatggcaccgccg 821
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 acggccaccgtcaccggcgcc 118 ||||||||||||||||||||| Sbjct: 1399803 acggccaccgtcaccggcgcc 1399783
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 cgccgccgacaagaccatctt 342 ||||||||||||||||||||| Sbjct: 8733429 cgccgccgacaagaccatctt 8733409
>ref|NM_185275.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1605 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 411 ccgccgctcgtccacgtccaccgccacc 438 ||||| ||||||| |||||||||||||| Sbjct: 78 ccgcccctcgtccgcgtccaccgccacc 51
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14, complete sequence Length = 159035 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 aacaagctcgccctcgccaa 147 |||||||||||||||||||| Sbjct: 13480 aacaagctcgccctcgccaa 13461
>ref|NM_191507.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2022 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 atggcctacttcgtcgccgc 327 |||||||||||||||||||| Sbjct: 730 atggcctacttcgtcgccgc 749
>ref|NM_191471.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 882 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 411 ccgccgctcgtccacgtccaccgccacc 438 |||||||||||||||| || |||||||| Sbjct: 393 ccgccgctcgtccacgcccgccgccacc 366
>gb|AY360387.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0003M24, complete sequence Length = 150085 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 caccggcgttcttcagccca 454 |||||||||||||||||||| Sbjct: 58060 caccggcgttcttcagccca 58079
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 411 ccgccgctcgtccacgtccaccgccacc 438 ||||| ||||||| |||||||||||||| Sbjct: 73125 ccgcccctcgtccgcgtccaccgccacc 73152
>gb|AC073094.11| Homo sapiens BAC clone RP11-369D24 from 7, complete sequence Length = 189126 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aagcaacaacaggccaggca 22 |||||||||||||||||||| Sbjct: 41372 aagcaacaacaggccaggca 41391
>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome Length = 1485148 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 ccacgtccaccgccaccggc 441 |||||||||||||||||||| Sbjct: 443728 ccacgtccaccgccaccggc 443709
>gb|AY273923.1| Hordeum vulgare subsp. vulgare putative cyclic nucleotide and calmodulin-regulated ion channel protein mRNA, partial cds Length = 2050 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 atggcctacttcgtcgccgc 327 |||||||||||||||||||| Sbjct: 471 atggcctacttcgtcgccgc 490
>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03, complete sequence Length = 45160 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aacaagctcgccctcgccaa 147 |||||||||||||||||||| Sbjct: 27810 aacaagctcgccctcgccaa 27829
>gb|AY972627.1| Hordeum vulgare subsp. vulgare cultivar Parkland cyclic nucleotide-gated ion channel 4 (Nec1) gene, exon 3 and partial cds Length = 2305 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 atggcctacttcgtcgccgc 327 |||||||||||||||||||| Sbjct: 482 atggcctacttcgtcgccgc 501
>gb|AY972626.1| Hordeum vulgare subsp. vulgare cultivar Carlsberg II cyclic nucleotide-gated ion channel 4 (Nec1) gene, exons 2, 3 and partial cds Length = 2306 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 atggcctacttcgtcgccgc 327 |||||||||||||||||||| Sbjct: 484 atggcctacttcgtcgccgc 503
>gb|AY972625.1| Hordeum vulgare subsp. vulgare cultivar Optic cyclic nucleotide-gated ion channel 4 (Nec1) gene, exons 2, 3 and partial cds Length = 2321 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 atggcctacttcgtcgccgc 327 |||||||||||||||||||| Sbjct: 497 atggcctacttcgtcgccgc 516
>gb|AY972624.1| Hordeum vulgare subsp. vulgare cultivar Steptoe cyclic nucleotide-gated ion channel 4 (Nec1) gene, exons 2, 3 and partial cds Length = 2308 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 atggcctacttcgtcgccgc 327 |||||||||||||||||||| Sbjct: 484 atggcctacttcgtcgccgc 503
>gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG098 cyclic nucleotide-gated ion channel 4 (Nec1) gene, complete cds Length = 9090 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 atggcctacttcgtcgccgc 327 |||||||||||||||||||| Sbjct: 5485 atggcctacttcgtcgccgc 5504
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gcgaggaggcactcatacga 369 |||||||||||||||||||| Sbjct: 2568720 gcgaggaggcactcatacga 2568739
>gb|AY129335.1| Mycobacteriophage Corndog, complete genome Length = 69777 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 309 tggcctacttcgtcgccgccgacaagac 336 ||||||||||||||| || ||||||||| Sbjct: 33725 tggcctacttcgtcgacggcgacaagac 33752
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 cgtccacgtccaccgccaccggcg 442 ||||| |||||||||||||||||| Sbjct: 117721 cgtcctcgtccaccgccaccggcg 117698
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cactccttgtactgagccgt 65 |||||||||||||||||||| Sbjct: 3544818 cactccttgtactgagccgt 3544799
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 caccggcgttcttcagccca 454 |||||||||||||||||||| Sbjct: 13125461 caccggcgttcttcagccca 13125442
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 aacaagctcgccctcgccaa 147 |||||||||||||||||||| Sbjct: 29365455 aacaagctcgccctcgccaa 29365436 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 411 ccgccgctcgtccacgtccaccgccacc 438 ||||| ||||||| |||||||||||||| Sbjct: 3195408 ccgcccctcgtccgcgtccaccgccacc 3195435
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 atggcctacttcgtcgccgc 327 |||||||||||||||||||| Sbjct: 33163421 atggcctacttcgtcgccgc 33163402 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 411 ccgccgctcgtccacgtccaccgccacc 438 |||||||||||||||| || |||||||| Sbjct: 32857332 ccgccgctcgtccacgcccgccgccacc 32857359
>gb|AC079945.21| Homo sapiens 3 BAC RP11-689D3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 149249 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aagcaacaacaggccaggca 22 |||||||||||||||||||| Sbjct: 48650 aagcaacaacaggccaggca 48669
>dbj|AP003368.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1100D10 Length = 152997 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 atggcctacttcgtcgccgc 327 |||||||||||||||||||| Sbjct: 100331 atggcctacttcgtcgccgc 100312
>dbj|AK190109.1| Mus musculus cDNA, clone:Y1G0101M04, strand:unspecified Length = 228 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 ggacacctccttccatggca 410 |||||||||||||||||||| Sbjct: 140 ggacacctccttccatggca 159
>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413G02 Length = 155633 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 411 ccgccgctcgtccacgtccaccgccacc 438 |||||||||||||||| || |||||||| Sbjct: 78737 ccgccgctcgtccacgcccgccgccacc 78764
>dbj|AP006482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1101E07 Length = 158084 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 caccggcgttcttcagccca 454 |||||||||||||||||||| Sbjct: 1812 caccggcgttcttcagccca 1793
>dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1100F03 Length = 139217 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 caccggcgttcttcagccca 454 |||||||||||||||||||| Sbjct: 105981 caccggcgttcttcagccca 105962
>gb|AE004984.1| Halobacterium sp. NRC-1 section 15 of 170 of the complete genome Length = 13961 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 gcggccgtcgccacggtcgc 207 |||||||||||||||||||| Sbjct: 9189 gcggccgtcgccacggtcgc 9208
>dbj|AK106130.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F10, full insert sequence Length = 1306 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aacaagctcgccctcgccaa 147 |||||||||||||||||||| Sbjct: 362 aacaagctcgccctcgccaa 381
>dbj|AK060122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G03, full insert sequence Length = 1187 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aacaagctcgccctcgccaa 147 |||||||||||||||||||| Sbjct: 242 aacaagctcgccctcgccaa 261
>dbj|AP003777.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-249I1, complete sequence Length = 173223 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 gccaaacgctgctccagaga 162 |||||||||||||||||||| Sbjct: 79165 gccaaacgctgctccagaga 79146
>dbj|AP003066.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-360K13, complete sequence Length = 187688 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 gccaaacgctgctccagaga 162 |||||||||||||||||||| Sbjct: 64625 gccaaacgctgctccagaga 64606
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 cgtccacgtccaccgccacc 438 |||||||||||||||||||| Sbjct: 392827 cgtccacgtccaccgccacc 392846
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cactccttgtactgagccgt 65 |||||||||||||||||||| Sbjct: 3544763 cactccttgtactgagccgt 3544744
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cactccttgtactgagccgt 65 |||||||||||||||||||| Sbjct: 59746 cactccttgtactgagccgt 59727
>emb|AL449215.3|HS352H24 Homo sapiens chromosome 3 sequence from BAC 352H24 map 3q21 region D3S3607-D3S1587, complete sequence Length = 134296 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aagcaacaacaggccaggca 22 |||||||||||||||||||| Sbjct: 51427 aagcaacaacaggccaggca 51408
>dbj|AB024311.1| Oryza sativa (japonica cultivar-group) mRNA for importin alpha 1b, complete cds Length = 2632 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 411 ccgccgctcgtccacgtccaccgccacc 438 ||||| ||||||| |||||||||||||| Sbjct: 222 ccgcccctcgtccgcgtccaccgccacc 195 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,223,892 Number of Sequences: 3902068 Number of extensions: 3223892 Number of successful extensions: 65829 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64640 Number of HSP's gapped (non-prelim): 1187 length of query: 488 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 466 effective length of database: 17,147,199,772 effective search space: 7990595093752 effective search space used: 7990595093752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
