ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast42c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 74 2e-13
2APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 73 3e-13
3FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 41 0.001
4EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 40 0.002
5FEOB2_PORGI (Q7MVL1) Ferrous iron transport protein B homolog 30 3.4
6AGT23_ARATH (Q9SR86) Alanine--glyoxylate aminotransferase 2 homo... 29 4.4
7CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity fa... 29 5.8
8RAVR1_HUMAN (Q8IY67) Protein raver-1 28 9.9
9KUP1_CHRVO (Q7NUG7) Probable potassium transport system protein ... 28 9.9
10OXAL2_PONPY (Q5R7D0) Probable inner membrane protein OXA1L2, mit... 28 9.9

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 36/78 (46%), Positives = 49/78 (62%)
 Frame = +1

Query: 199 DSTVDTGNNNQIGTTLRSDFPPYGRDMPGGARATGRFGNGRLPPDFISEALGLPPLVPAY 378
           DS  DTGNNN + T ++S++ PYG D      ATGRF NG +  D++++ +G+  +VPAY
Sbjct: 210 DSVFDTGNNNNLETKIKSNYRPYGMDFKFRV-ATGRFSNGMVASDYLAKYMGVKEIVPAY 268

Query: 379 LDPAYGIGDFARGVCFAS 432
           LDP     D   GV FAS
Sbjct: 269 LDPKIQPNDLLTGVSFAS 286



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 40/84 (47%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
 Frame = +1

Query: 199 DSTVDTGNNNQIGTTLRSDFPPYGRDMPGGARATGRFGNGRLPPDFISEALGLPPLVPAY 378
           DS  DTGNNN + T L+ ++ PYG D P G  ATGRF NGR+  D+IS+ LG+  +VPAY
Sbjct: 131 DSIFDTGNNNNLDTKLKCNYRPYGMDFPMGV-ATGRFSNGRVASDYISKYLGVKEIVPAY 189

Query: 379 LDP------AYGIGDFARGVCFAS 432
           +D            D   GV FAS
Sbjct: 190 VDKKLQQNNELQQSDLLTGVSFAS 213



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 31/79 (39%), Positives = 41/79 (51%)
 Frame = +1

Query: 199 DSTVDTGNNNQIGTTLRSDFPPYGRDMPGGARATGRFGNGRLPPDFISEALGLPPLVPAY 378
           DS  DTG    +        PP+G    G     GR+ +GRL  DFI+E+LGLP L  A+
Sbjct: 36  DSNSDTGG---LSAAFGQAGPPHGSSFFGSP--AGRYCDGRLVIDFIAESLGLPYL-SAF 89

Query: 379 LDPAYGIGDFARGVCFASA 435
           LD      +F+ G  FA+A
Sbjct: 90  LDSVG--SNFSHGANFATA 106



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 32/79 (40%), Positives = 39/79 (49%)
 Frame = +1

Query: 199 DSTVDTGNNNQIGTTLRSDFPPYGRDMPGGARATGRFGNGRLPPDFISEALGLPPLVPAY 378
           DS  DTG        L    PPYG       R+TGR+ +GRL  DFI+E+  LP L P Y
Sbjct: 40  DSNSDTGGKAAAFYPLN---PPYGETF--FHRSTGRYSDGRLIIDFIAESFNLPYLSP-Y 93

Query: 379 LDPAYGIGDFARGVCFASA 435
           L       +F  G  FA+A
Sbjct: 94  LSSLG--SNFKHGADFATA 110



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>FEOB2_PORGI (Q7MVL1) Ferrous iron transport protein B homolog|
          Length = 725

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 313 NGRLPPDFISEALGLPPLVPAYLDPAYGIG 402
           NGR P   +   + L P VPAYL    GIG
Sbjct: 471 NGRWPTQILLATIFLTPAVPAYLRGVIGIG 500



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>AGT23_ARATH (Q9SR86) Alanine--glyoxylate aminotransferase 2 homolog 3,|
           mitochondrial precursor (EC 2.6.1.44)
           (Beta-alanine-pyruvate aminotransferase 3)
          Length = 481

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +1

Query: 304 RFGNGRLPPDFISEAL----GLPPLVPAYLDPAYGIGDFARGVCFA 429
           +FG       FI E++    G+  L P YL  AY I   A GVC A
Sbjct: 249 QFGTSGQVAGFIGESIQGVGGIVELAPGYLPAAYDIVRKAGGVCIA 294



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>CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity factor 6|
          Length = 548

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
 Frame = +1

Query: 235 GTTLRSDFPPYGRDM-------PGGARATGRFGNGRLPPDFISEALGLPPLVPAYLDP 387
           G   R  FPP GR         PGG R  G  G G  PP F   + G+ P  P    P
Sbjct: 191 GINARLPFPPGGRGRGRFPTSGPGGDRFPGPAGPGGPPPPF---SAGMTPPRPPMCPP 245



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>RAVR1_HUMAN (Q8IY67) Protein raver-1|
          Length = 606

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
 Frame = +1

Query: 262 PYGRDMPGGARATGRFGN----GRLPPDFISEALGLPPLVPAYLDPAYG 396
           P G   PG   A    G     G LPP+        PPL+P+ L PA G
Sbjct: 400 PLGALQPGAQPANPLLGELPAGGGLPPELPPRRGKPPPLLPSVLGPAGG 448



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>KUP1_CHRVO (Q7NUG7) Probable potassium transport system protein kup 1|
          Length = 640

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +1

Query: 283 GGARATGRFGNGRLP--PDFIS---EALGLPPLVPAYLDPAYGIG 402
           G AR T R+G    P  P+ ++   EALGLPPL P  L  +Y +G
Sbjct: 547 GMARVTARYGYMEEPDVPEAMARAAEALGLPPLEP--LSTSYYLG 589



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>OXAL2_PONPY (Q5R7D0) Probable inner membrane protein OXA1L2, mitochondrial|
           precursor
          Length = 334

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 320 RPLPNRPV-ARAPPGMSRP*GGKSDRSVVPIWLLLPVSTVES 198
           RPLP   + AR PP    P  G + R  +P+W + PVS V +
Sbjct: 11  RPLPALQLWARDPPLAPVPTSG-AKRPTLPVWAVTPVSAVHA 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,772,796
Number of Sequences: 219361
Number of extensions: 645429
Number of successful extensions: 2473
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2459
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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