Clone Information

BLAST Search Result

Clone Name	bast42b02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog ...	159	3e-39
2	PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog	150	9e-37
3	PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-bindi...	138	5e-33
4	PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)...	138	5e-33
5	PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase ...	136	2e-32
6	PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)...	134	1e-31
7	PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog	131	8e-31
8	PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog	120	2e-27
9	PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog ...	117	1e-26
10	PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog ...	114	1e-25
11	PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B	110	1e-24
12	PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog	91	2e-18
13	PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (P...	51	1e-06
14	PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Pro...	51	1e-06
15	PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (P...	51	1e-06
16	PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (P...	51	1e-06
17	PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (P...	51	1e-06
18	PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)	50	3e-06
19	PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso...	48	9e-06
20	PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteaso...	47	2e-05
21	PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteaso...	47	3e-05
22	PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteaso...	47	3e-05
23	PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (T...	46	3e-05
24	PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (T...	46	4e-05
25	PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteaso...	46	4e-05
26	PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteaso...	44	2e-04
27	PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteaso...	44	2e-04
28	PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteaso...	42	8e-04
29	PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteaso...	40	0.003
30	PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S1...	39	0.005
31	PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso...	38	0.009
32	PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteaso...	37	0.026
33	PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteaso...	36	0.034
34	PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Prote...	35	0.058
35	PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Prote...	35	0.058
36	PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Prote...	35	0.058
37	PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4	33	0.22
38	PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease sub...	32	0.64
39	CE290_HUMAN (O15078) Centrosomal protein Cep290	32	0.64
40	MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1	31	1.4
41	CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centroso...	31	1.4
42	LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase...	31	1.4
43	MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structura...	30	1.9
44	CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-...	30	1.9
45	LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1....	30	1.9
46	LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1....	30	1.9
47	CING_HUMAN (Q9P2M7) Cingulin	30	1.9
48	FOSL1_HUMAN (P15407) Fos-related antigen 1 (FRA-1)	30	2.4
49	PFDB_HALMA (Q5V1L3) Prefoldin beta subunit (GimC beta subunit)	30	3.2
50	RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase	30	3.2
51	SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like...	29	4.1
52	HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13...	29	4.1
53	CE290_BOVIN (Q9TU23) Centrosomal protein Cep290	29	4.1
54	NRBF2_RAT (Q9QYK3) Nuclear receptor-binding factor 2 (NRBF-2)	29	5.4
55	NRBF2_PONPY (Q5R4C9) Nuclear receptor-binding factor 2 (NRBF-2)	29	5.4
56	NRBF2_MOUSE (Q8VCQ3) Nuclear receptor-binding factor 2 (NRBF-2)	29	5.4
57	NRBF2_HUMAN (Q96F24) Nuclear receptor-binding factor 2 (NRBF-2) ...	29	5.4
58	MYOC_BOVIN (Q9XTA3) Myocilin precursor (Trabecular meshwork-indu...	29	5.4
59	GOGA6_HUMAN (Q9NYA3) Golgin subfamily A member 6 (Golgin linked ...	29	5.4
60	ATP5I_BOVIN (Q00361) ATP synthase e chain, mitochondrial (EC 3.6...	29	5.4
61	IFD1_CAEEL (Q86DC6) Intermediate filament protein ifd-1 (Interme...	28	7.1
62	WTAP_MOUSE (Q9ER69) Wilms' tumor 1-associating protein (WT1-asso...	28	7.1
63	WTAP_HUMAN (Q15007) Wilms' tumor 1-associating protein (WT1-asso...	28	7.1
64	RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-assoc...	28	7.1
65	MICA1_HUMAN (Q8TDZ2) NEDD9-interacting protein with calponin hom...	28	7.1
66	THIC_COREF (Q8FPT3) Thiamine biosynthesis protein thiC	28	7.1
67	FOSL1_MOUSE (P48755) Fos-related antigen 1 (FRA-1)	28	7.1
68	AMOT_HUMAN (Q4VCS5) Angiomotin	28	9.2
69	SYV_MYCGE (P47576) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...	28	9.2
70	DXR_PELUB (Q4FM64) 1-deoxy-D-xylulose 5-phosphate reductoisomera...	28	9.2

>PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog (26S proteasome|
           AAA-ATPase subunit RPT3) (Regulatory particle triple-A
           ATPase subunit 3)
          Length = 408

 Score =  159 bits (402), Expect = 3e-39
 Identities = 79/87 (90%), Positives = 84/87 (96%)
 Frame = +1

Query: 166 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 345
           D++DLYGRLKSL+R +EF +IQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM
Sbjct: 26  DEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 85

Query: 346 VDGNNGIVGSTTGSNYYVRILSTINRE 426
           VD NNGIVGSTTGSNYYVRILSTINRE
Sbjct: 86  VDQNNGIVGSTTGSNYYVRILSTINRE 112

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>PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog|
          Length = 413

 Score =  150 bits (380), Expect = 9e-37
 Identities = 75/88 (85%), Positives = 81/88 (92%)
 Frame = +1

Query: 163 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 342
           + +DDLY RLKSLQR +EF+EIQEEYVKDE KNL+RE LRAQEEVKRIQSVPLVIGQFME
Sbjct: 30  DGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFME 89

Query: 343 MVDGNNGIVGSTTGSNYYVRILSTINRE 426
           M+D NN IVGSTTGSNYYVRILSTINRE
Sbjct: 90  MIDQNNAIVGSTTGSNYYVRILSTINRE 117

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>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)|
           (TBP-7)
          Length = 418

 Score =  138 bits (348), Expect = 5e-33
 Identities = 67/88 (76%), Positives = 77/88 (87%)
 Frame = +1

Query: 163 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 342
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 343 MVDGNNGIVGSTTGSNYYVRILSTINRE 426
            VD N  IVGSTTGSNYYVRILSTI+RE
Sbjct: 95  AVDQNTAIVGSTTGSNYYVRILSTIDRE 122

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>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7)
          Length = 418

 Score =  138 bits (348), Expect = 5e-33
 Identities = 67/88 (76%), Positives = 77/88 (87%)
 Frame = +1

Query: 163 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 342
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 343 MVDGNNGIVGSTTGSNYYVRILSTINRE 426
            VD N  IVGSTTGSNYYVRILSTI+RE
Sbjct: 95  AVDQNTAIVGSTTGSNYYVRILSTIDRE 122

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>PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase MS73)|
          Length = 415

 Score =  136 bits (343), Expect = 2e-32
 Identities = 66/87 (75%), Positives = 77/87 (88%)
 Frame = +1

Query: 166 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 345
           + +DLY + K LQR +EF+E+QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E 
Sbjct: 33  ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 92

Query: 346 VDGNNGIVGSTTGSNYYVRILSTINRE 426
           VD N GIVGSTTGSNYYVRILSTI+RE
Sbjct: 93  VDQNTGIVGSTTGSNYYVRILSTIDRE 119

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>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7) (CIP21)
          Length = 418

 Score =  134 bits (336), Expect = 1e-31
 Identities = 64/88 (72%), Positives = 76/88 (86%)
 Frame = +1

Query: 163 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 342
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 343 MVDGNNGIVGSTTGSNYYVRILSTINRE 426
            VD N  IV STTGSNYYVR++STI+RE
Sbjct: 95  AVDQNTAIVASTTGSNYYVRMVSTIDRE 122

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>PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog|
          Length = 423

 Score =  131 bits (329), Expect = 8e-31
 Identities = 62/87 (71%), Positives = 76/87 (87%)
 Frame = +1

Query: 166 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 345
           D  D Y  LK LQRH+E++++QEEY+KDEQ++LKREL+RAQEE+KRIQSVPLVIGQFME 
Sbjct: 37  DGSDEYATLKRLQRHLEYIQLQEEYIKDEQRSLKRELVRAQEEIKRIQSVPLVIGQFMEA 96

Query: 346 VDGNNGIVGSTTGSNYYVRILSTINRE 426
           +D N GIV S+TGSNY VRILST++RE
Sbjct: 97  IDQNTGIVQSSTGSNYVVRILSTLDRE 123

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>PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog|
          Length = 389

 Score =  120 bits (300), Expect = 2e-27
 Identities = 57/87 (65%), Positives = 75/87 (86%)
 Frame = +1

Query: 166 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 345
           ++ DLY R K+L+R +E +++QE ++K++ K+LKREL+RAQEEVKRIQSVPLVIGQF+E 
Sbjct: 5   EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64

Query: 346 VDGNNGIVGSTTGSNYYVRILSTINRE 426
           +D N  IVGSTTGSNY VRILST++RE
Sbjct: 65  IDQNTAIVGSTTGSNYVVRILSTLDRE 91

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>PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog (YNT1 protein)|
           (TAT-binding homolog 2)
          Length = 428

 Score =  117 bits (293), Expect = 1e-26
 Identities = 56/86 (65%), Positives = 72/86 (83%)
 Frame = +1

Query: 169 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 348
           + D+Y +LK L++  E + +QE+Y+KDEQ++LKREL RAQEEVKRIQSVPLVIGQF+E +
Sbjct: 44  NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPI 103

Query: 349 DGNNGIVGSTTGSNYYVRILSTINRE 426
           D N GIV STTG +Y VRILST++RE
Sbjct: 104 DQNTGIVSSTTGMSYVVRILSTLDRE 129

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>PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog (TAT-binding|
           protein homolog 2)
          Length = 403

 Score =  114 bits (285), Expect = 1e-25
 Identities = 58/84 (69%), Positives = 69/84 (82%)
 Frame = +1

Query: 175 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG 354
           DLY ++KSL+  ++F  IQEEY+K E KNLKRELL AQEEVKRI+SVPL+IGQ +EMVD 
Sbjct: 24  DLYQKMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEEVKRIRSVPLLIGQLLEMVDS 83

Query: 355 NNGIVGSTTGSNYYVRILSTINRE 426
           N GIV ST+GS   VRILSTI+RE
Sbjct: 84  NTGIVQSTSGSTLCVRILSTIDRE 107

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>PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B|
          Length = 414

 Score =  110 bits (275), Expect = 1e-24
 Identities = 53/84 (63%), Positives = 70/84 (83%)
 Frame = +1

Query: 175 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG 354
           D Y +L +L+R +  +++ E+Y+K E +NL++ELL AQEEVKRIQSVPLVIGQF+E VD 
Sbjct: 35  DDYIKLTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVKRIQSVPLVIGQFLEAVDQ 94

Query: 355 NNGIVGSTTGSNYYVRILSTINRE 426
           N+ IVGSTTGSNYYVR+LS ++RE
Sbjct: 95  NHAIVGSTTGSNYYVRVLSILDRE 118

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>PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog|
          Length = 387

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 42/83 (50%), Positives = 63/83 (75%)
 Frame = +1

Query: 178 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 357
           L+ R K ++R +  +EI+E YV+ E + LKRE   ++EE+ R++SVPL++GQF+E +D +
Sbjct: 9   LFVRYKQMERKLRLLEIREGYVRKEIETLKREERHSREELDRVKSVPLIMGQFLEPIDSS 68

Query: 358 NGIVGSTTGSNYYVRILSTINRE 426
             IVGST GSN+ VRILST++RE
Sbjct: 69  TAIVGSTAGSNFVVRILSTVDRE 91

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>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)|
          Length = 448

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDGN 357
           RL  +QR  + + ++EEYV++ Q+ LK +  R QEE   V  I+  P+ +G   E++D +
Sbjct: 68  RLLKMQRIHDHLLMEEEYVQN-QERLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDD 126

Query: 358 NGIVGSTTGSNYYVRILSTINRE 426
           + IV ST G  YYV I+S ++++
Sbjct: 127 HAIV-STAGPEYYVSIMSFVDKD 148

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>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 22/82 (26%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 360
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 361 GIVGSTTGSNYYVRILSTINRE 426
            IV ++ GS +YV ILS ++++
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKD 142

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>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 22/82 (26%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 360
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 361 GIVGSTTGSNYYVRILSTINRE 426
            IV ++ GS +YV ILS ++++
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKD 142

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>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 22/82 (26%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 360
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 361 GIVGSTTGSNYYVRILSTINRE 426
            IV ++ GS +YV ILS ++++
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKD 142

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>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 22/82 (26%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 360
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 361 GIVGSTTGSNYYVRILSTINRE 426
            IV ++ GS +YV ILS ++++
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKD 142

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>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 23/83 (27%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDGN 357
           +L  L+R  +++ +++E+++++++ LK +  + +EE   V  ++  P+ +G   E++D N
Sbjct: 60  KLLKLERIKDYLMMEDEFIRNQER-LKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDN 118

Query: 358 NGIVGSTTGSNYYVRILSTINRE 426
           + IV ++ GS +YV ILS ++++
Sbjct: 119 HAIVSTSVGSEHYVSILSFVDKD 141

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>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 24/82 (29%), Positives = 49/82 (59%)
 Frame = +1

Query: 181 YGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 360
           Y +L+ L R +E    ++++++ E+   +RE+ R + EV+R++S PL++G   ++++   
Sbjct: 20  YYKLRELYRRLED---EKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGR 76

Query: 361 GIVGSTTGSNYYVRILSTINRE 426
            +V S+TG  + V     IN E
Sbjct: 77  VVVKSSTGPKFVVNTSQYINEE 98

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>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 23/76 (30%), Positives = 44/76 (57%)
 Frame = +1

Query: 199 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 378
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV + 
Sbjct: 22  LKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNY 81

Query: 379 TGSNYYVRILSTINRE 426
            G  + VRI   I R+
Sbjct: 82  NGPRFVVRIAPWIERD 97

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>PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 396

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
 Frame = +1

Query: 163 EDDDDLYGRLKS----LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 330
           ED+   +G        L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G
Sbjct: 3   EDEAQFHGNYDDYVTYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAG 62

Query: 331 QFMEMVDGNNGIVGSTTGSNYYVRILSTINR 423
             +E++D +  IV +  G  + VRI   I++
Sbjct: 63  SVIEVLDDDRAIVQNYNGPRFVVRIAPWIDK 93

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>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 23/76 (30%), Positives = 45/76 (59%)
 Frame = +1

Query: 199 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 378
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV + 
Sbjct: 22  LKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNY 81

Query: 379 TGSNYYVRILSTINRE 426
            G  + VRI   I+R+
Sbjct: 82  NGPRFVVRIAPWIDRK 97

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>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding|
           homolog 5)
          Length = 437

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 360
           +L  ++R  + + ++EE+V + +  K  +++    +++++ I+  PL IG   E++D ++
Sbjct: 58  KLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDH 117

Query: 361 GIVGSTTGSNYYVRILSTINRE 426
            IV S T  +YYV ILS +++E
Sbjct: 118 AIVTSPTMPDYYVSILSFVDKE 139

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>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding|
           protein homolog 2)
          Length = 448

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQE--EVKRIQSVPLVIGQFMEMVDGNN 360
           RL  L+R  +++ ++EE+V  +++    E    ++  +V  ++  P+ +G   E++D ++
Sbjct: 69  RLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESH 128

Query: 361 GIVGSTTGSNYYVRILSTINRE 426
            IV S+ G  YYV ILS ++++
Sbjct: 129 AIVSSSVGPEYYVGILSFVDKD 150

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>PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 397

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 23/76 (30%), Positives = 43/76 (56%)
 Frame = +1

Query: 199 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 378
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D    IV + 
Sbjct: 20  LKRRIRQLELQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNY 79

Query: 379 TGSNYYVRILSTINRE 426
            G  + VRI   I R+
Sbjct: 80  NGPRFVVRIAPWIERD 95

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>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 420

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/83 (24%), Positives = 47/83 (56%)
 Frame = +1

Query: 178 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 357
           L  R   L+     +E ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +
Sbjct: 34  LESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKND 93

Query: 358 NGIVGSTTGSNYYVRILSTINRE 426
             IV S+ G  + V +   I+ +
Sbjct: 94  RIIVRSSNGPQFLVNVSQYIDEK 116

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>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 421

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/83 (24%), Positives = 47/83 (56%)
 Frame = +1

Query: 178 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 357
           L  R   L+     +E ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +
Sbjct: 34  LESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKND 93

Query: 358 NGIVGSTTGSNYYVRILSTINRE 426
             IV S+ G  + V +   I+ +
Sbjct: 94  RIIVRSSNGPQFLVNVSQYIDEK 116

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>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 436

 Score = 41.6 bits (96), Expect = 8e-04
 Identities = 18/79 (22%), Positives = 46/79 (58%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGI 366
           R K+L++ +E    ++  +++E +  +  + + + +++R++  PL++G   E++D    I
Sbjct: 57  RRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVI 116

Query: 367 VGSTTGSNYYVRILSTINR 423
           V S+TG  +   +  T++R
Sbjct: 117 VKSSTGPKFVSNVSPTVDR 135

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>PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 410

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 21/78 (26%), Positives = 44/78 (56%)
 Frame = +1

Query: 193 KSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVG 372
           ++L   +  +E  +  +++E+  L RE+   + E++R ++ PLVI    E++D +   V 
Sbjct: 31  RNLMWKIRKLEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVK 90

Query: 373 STTGSNYYVRILSTINRE 426
           STTG ++ +     I+R+
Sbjct: 91  STTGPHFVINYSRFIDRK 108

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>PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S10B (Proteasome|
           regulatory particle ATPase-like protein 4)
          Length = 406

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
 Frame = +1

Query: 169 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKN---LKRELLRAQEEVKRIQSVPLVIGQFM 339
           +D+    L S +R +      E+ +KD +K    + ++  +++ ++K +QSV  ++G+ +
Sbjct: 19  EDERTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVL 78

Query: 340 EMVDGNNGIVGSTTGSNYYVRILSTINRE 426
           + +     IV +T G  Y V    +IN+E
Sbjct: 79  KQLSEEKFIVKATNGPRYVVGCRRSINKE 107

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>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
 Frame = +1

Query: 190 LKSLQRHMEFVEIQEEYVKDEQKN---------LKRELLRAQEEVKRIQSVPLVIGQFME 342
           LK  +   +  E++ + ++ E KN         +K+E    + E+ +++  PL++G  ++
Sbjct: 18  LKEFKEKTQIAELESKVLRLELKNKDINRENVQIKKENEILKRELDKLRIPPLILGTILD 77

Query: 343 MVDGNNGIVGSTTGSNYYVRILSTINRE 426
            V+    +V S+TG N+ V +   ++ E
Sbjct: 78  KVNERKAVVKSSTGPNFLVNLSQFVDPE 105

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>PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 430

 Score = 36.6 bits (83), Expect = 0.026
 Identities = 18/78 (23%), Positives = 43/78 (55%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGI 366
           R+  L+  +  +E++++ ++ E   L +E    + E+ R++  PL++G  ++ V     +
Sbjct: 48  RIAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVVDKVGERKVV 107

Query: 367 VGSTTGSNYYVRILSTIN 420
           V S+TG ++ V +   +N
Sbjct: 108 VKSSTGPSFLVNVSHFVN 125

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>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 393

 Score = 36.2 bits (82), Expect = 0.034
 Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
 Frame = +1

Query: 211 MEFVEIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTT 381
           ++ V + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++
Sbjct: 17  VQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSS 76

Query: 382 GSNYYVRILSTINRE 426
           G N  V I S I+++
Sbjct: 77  GPNLVVNIASHIDQK 91

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>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase
           domain protein 44) (CADp44)
          Length = 389

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 19/77 (24%), Positives = 42/77 (54%)
 Frame = +1

Query: 169 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 348
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 349 DGNNGIVGSTTGSNYYV 399
                IV +T G  Y V
Sbjct: 65  TEEKFIVKATNGPRYVV 81

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>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 19/77 (24%), Positives = 42/77 (54%)
 Frame = +1

Query: 169 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 348
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 349 DGNNGIVGSTTGSNYYV 399
                IV +T G  Y V
Sbjct: 65  TEEKFIVKATNGPRYVV 81

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>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 19/77 (24%), Positives = 42/77 (54%)
 Frame = +1

Query: 169 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 348
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 349 DGNNGIVGSTTGSNYYV 399
                IV +T G  Y V
Sbjct: 65  TEEKFIVKATNGPRYVV 81

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>PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4|
          Length = 388

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 13/56 (23%), Positives = 35/56 (62%)
 Frame = +1

Query: 256 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINR 423
           ++L ++  + ++++K +QSV  +IG+ ++ +D    IV +++G  Y V   + +++
Sbjct: 33  RDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQ 88

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>PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease subunit SUG2)|
           (Proteasomal cap subunit)
          Length = 437

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 13/56 (23%), Positives = 35/56 (62%)
 Frame = +1

Query: 256 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINR 423
           ++L++   + + ++K +QS+  +IG+ M+ +     IV +++G  Y V + ++++R
Sbjct: 82  RDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDR 137

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>CE290_HUMAN (O15078) Centrosomal protein Cep290|
          Length = 1539

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = +1

Query: 166  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 276
            D D L  ++K L+  ++  +++++++K+E K LK+EL
Sbjct: 1437 DADQLKEKIKDLETQLKMSDLEKQHLKEEIKKLKKEL 1473

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>MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1|
          Length = 722

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +1

Query: 196 SLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 357
           +L++ + F+E Q    K+ +KNL+ EL RA E +  +      + + +E+ + +
Sbjct: 556 TLEKELTFLEAQITREKESRKNLEEELERATESLDEMNRNAFALAKELELANSH 609

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>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated|
            protein of 350 kDa)
          Length = 3117

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +1

Query: 166  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE--VKRIQS 312
            D  D+ GR+++L+  +   +     +K EQK  ++E L+AQE   +K+++S
Sbjct: 2046 DQSDIEGRIRALKDELRKRKSVVNQLKKEQKKRQKERLKAQEASLIKQLES 2096

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>LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein-binding protein 1)
           (PTPRF-interacting protein-binding protein 1) (hSGT2)
          Length = 1011

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS--VPLVIGQFMEMVD 351
           ++  +Q   + +E + E +KDE  +LK +L   + EVKR+Q   V  + G+ +E+VD
Sbjct: 244 KVGQMQYEKQRMEQKWESLKDELASLKEQLEEKESEVKRLQEKLVCKMKGEGVEIVD 300

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>MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structural maintenance of|
            chromosome-related protein)
          Length = 1499

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 172  DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKR 303
            D+L+ +L + ++   FVE Q   ++ E +NL R + +A+ + K+
Sbjct: 1090 DELHHQLSTSRQRRSFVEKQLTLIESEAENLTRRIRKAERDYKQ 1133

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>CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 911

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +1

Query: 193 KSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 342
           K  Q  +E  +++E+  K+E+K L+ E  R +EE KRI++    I +F +
Sbjct: 381 KERQEALE-AKLEEKRKKEEEKRLREEEKRLREEEKRIKAEKAEITRFFQ 429

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>LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (BRAF35-HDAC
           complex protein BHC110)
          Length = 852

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 11/29 (37%), Positives = 23/29 (79%)
 Frame = +1

Query: 220 VEIQEEYVKDEQKNLKRELLRAQEEVKRI 306
           +++QE++VKDEQ    +++++ QEE+K +
Sbjct: 416 IQLQEKHVKDEQIEHWKKIVKTQEELKEL 444

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>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (AOF2
           protein) (BRAF35-HDAC complex protein BHC110)
          Length = 853

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 11/29 (37%), Positives = 23/29 (79%)
 Frame = +1

Query: 220 VEIQEEYVKDEQKNLKRELLRAQEEVKRI 306
           +++QE++VKDEQ    +++++ QEE+K +
Sbjct: 417 IQLQEKHVKDEQIEHWKKIVKTQEELKEL 445

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>CING_HUMAN (Q9P2M7) Cingulin|
          Length = 1197

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +1

Query: 163 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS 312
           E +++L  +++ LQR +E         +  +  LK+ELLR QEE+K +Q+
Sbjct: 592 EMEEELGEKIEVLQRELEQARASAGDTRQVEV-LKKELLRTQEELKELQA 640

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>FOSL1_HUMAN (P15407) Fos-related antigen 1 (FRA-1)|
          Length = 271

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +1

Query: 214 EFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG-NNGIVGSTTGSN 390
           +F++ + + ++DE+  L+RE+   Q++ +R++ V        ++ +G   G  GST+G++
Sbjct: 131 DFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKEGDTGSTSGTS 190

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>PFDB_HALMA (Q5V1L3) Prefoldin beta subunit (GimC beta subunit)|
          Length = 129

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 163 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 276
           E  DDL  ++ SL+  +E +E QEE V+++ + L+ EL
Sbjct: 71  EAQDDLEEKVNSLEVRVETLEKQEERVQEQFEELQSEL 108

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>RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase|
          Length = 886

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 202 QRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSV 315
           +R  EF+  QEE +K +++  K E+ R  EE+K I+S+
Sbjct: 173 ERLKEFLS-QEEQIKRQKEEKKAEIERISEEIKSIESL 209

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>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C
            homolog)
          Length = 1288

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = +1

Query: 172  DDLYGRLKSLQ-------RHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 330
            DDL   LKSL+       ++    E     ++ E +NL +EL   QE    +Q   L I 
Sbjct: 956  DDLTAELKSLEDKAAEVVKNTNAAEESLPEIQKEHRNLLQELKVIQENEHALQKDALSIK 1015

Query: 331  QFMEMVDGN 357
              +E +DG+
Sbjct: 1016 LKLEQIDGH 1024

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>HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (T-cell reactive protein)
          Length = 399

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +1

Query: 205 RHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVI 327
           R  EF+++ E Y +D +  LKR+ L   E+ + ++S+ ++I
Sbjct: 301 RGTEFIKVPETYYEDMKIRLKRQGLVLDEDFETLKSLDILI 341

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>CE290_BOVIN (Q9TU23) Centrosomal protein Cep290|
          Length = 1453

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 166  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 276
            D D L  ++K L+  +   +++++++K+E + LK+EL
Sbjct: 1351 DPDHLMEKIKDLETQLRTSDMEKQHLKEEIQKLKKEL 1387

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>NRBF2_RAT (Q9QYK3) Nuclear receptor-binding factor 2 (NRBF-2)|
          Length = 287

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLR 282
           ++  L+RH+EF+  + E ++ E K LK E  R
Sbjct: 174 KIAELKRHVEFLVAENERLRKENKQLKAEKAR 205

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>NRBF2_PONPY (Q5R4C9) Nuclear receptor-binding factor 2 (NRBF-2)|
          Length = 287

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLR 282
           ++  L+RH+EF+  + E ++ E K LK E  R
Sbjct: 174 KIADLKRHVEFLVAENERLRKENKQLKAEKAR 205

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>NRBF2_MOUSE (Q8VCQ3) Nuclear receptor-binding factor 2 (NRBF-2)|
          Length = 287

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLR 282
           ++  L+RH+EF+  + E ++ E K LK E  R
Sbjct: 174 KIADLKRHVEFLVAENERLRKENKQLKAEKAR 205

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>NRBF2_HUMAN (Q96F24) Nuclear receptor-binding factor 2 (NRBF-2) (Comodulator of|
           PPAR and RXR)
          Length = 287

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 187 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLR 282
           ++  L+RH+EF+  + E ++ E K LK E  R
Sbjct: 174 KIADLKRHVEFLVAENERLRKENKQLKAEKAR 205

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>MYOC_BOVIN (Q9XTA3) Myocilin precursor (Trabecular meshwork-induced|
           glucocorticoid response protein)
          Length = 490

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 163 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS 312
           E    L   L++L+R  E +E Q + ++    NL R+    +EE +R+Q+
Sbjct: 98  ETHQGLQRELEALRREREQLETQTQELESAYSNLVRDKSALEEEKRRLQA 147

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>GOGA6_HUMAN (Q9NYA3) Golgin subfamily A member 6 (Golgin linked to PML)|
           (Golgin-like protein)
          Length = 693

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = +1

Query: 163 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRI 306
           E ++ L  + K+LQ   E +  QE+ ++ +++ L++E  R Q++ KR+
Sbjct: 362 EQNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRL 409

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>ATP5I_BOVIN (Q00361) ATP synthase e chain, mitochondrial (EC 3.6.3.14)|
          Length = 70

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 YGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE 294
           Y  LK        +  +E+  +DEQK ++REL  AQE+
Sbjct: 29  YNYLKPRAEEERRLAAEEKKKRDEQKRIERELAEAQED 66

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>IFD1_CAEEL (Q86DC6) Intermediate filament protein ifd-1 (Intermediate filament|
           protein D1) (IF-D1) (Cel IF D1)
          Length = 575

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = +1

Query: 193 KSLQRHMEFVEIQEEYVK-------DEQKNLKRELLRAQEEVKRI 306
           K   +H+  +E +  Y+K       DE+ +LK E+ R + E+KRI
Sbjct: 157 KEQLKHLSDLESETAYIKRLINDCDDEKSHLKTEISRIRGEIKRI 201

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>WTAP_MOUSE (Q9ER69) Wilms' tumor 1-associating protein (WT1-associated|
           protein) (Putative pre-mRNA-splicing regulator
           female-lethal(2D) homolog)
          Length = 396

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 184 GRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQ 333
           GR+  L+  +   +   E +K  Q  L   +++  EEV+ +QS  LV+ Q
Sbjct: 178 GRIAQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQ 227

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>WTAP_HUMAN (Q15007) Wilms' tumor 1-associating protein (WT1-associated|
           protein) (Putative pre-mRNA-splicing regulator
           female-lethal(2D) homolog)
          Length = 396

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 184 GRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQ 333
           GR+  L+  +   +   E +K  Q  L   +++  EEV+ +QS  LV+ Q
Sbjct: 178 GRIAQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQ 227

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>RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated protein|
           1 (PRAX-1) (RIM-binding protein 1) (RIM-BP1)
          Length = 1847

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +1

Query: 178 LYGRLKSLQR---HMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQ 309
           L  +L+SL++   HM  V  + + +++E +  +  L   QEEV+R+Q
Sbjct: 424 LQSKLESLEQVLEHMRKVAQRRQQLEEEHEQARLSLQEKQEEVRRLQ 470

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>MICA1_HUMAN (Q8TDZ2) NEDD9-interacting protein with calponin homology and LIM|
            domains (Molecule interacting with CasL protein 1)
          Length = 1067

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 17/69 (24%), Positives = 36/69 (52%)
 Frame = +1

Query: 163  EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 342
            E++   + + +++QR +   EI+    + E + +K EL   ++     Q   L +GQ ++
Sbjct: 919  EEEMKRFCKAQTIQRRLN--EIEAALRELEAEGVKLELALRRQSSSPEQQKKLWVGQLLQ 976

Query: 343  MVDGNNGIV 369
            +VD  N +V
Sbjct: 977  LVDKKNSLV 985

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>THIC_COREF (Q8FPT3) Thiamine biosynthesis protein thiC|
          Length = 580

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +1

Query: 181 YGRLKSLQRHMEFVEIQE----EYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG-QFMEM 345
           Y R   + R MEFV ++E    E+V+ E   + R        V   +S P++IG +F+  
Sbjct: 120 YARAGEITREMEFVALREHVDPEFVRSE---VARGRAIIPNNVNHPESEPMIIGRKFLTK 176

Query: 346 VDGNNG 363
           ++ N G
Sbjct: 177 INANIG 182

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>FOSL1_MOUSE (P48755) Fos-related antigen 1 (FRA-1)|
          Length = 273

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/62 (24%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
 Frame = +1

Query: 214 EFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN---GIVGSTTG 384
           +F++ + + ++DE+  L+RE+   Q++ +R++ V        ++ +G+    G  GST+G
Sbjct: 131 DFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGDKKDPGGSGSTSG 190

Query: 385 SN 390
           ++
Sbjct: 191 AS 192

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>AMOT_HUMAN (Q4VCS5) Angiomotin|
          Length = 1084

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 235 EYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 342
           E + DE +NL++EL    E+V R+Q V   I +  E
Sbjct: 439 EILSDENRNLRQELEGCYEKVARLQKVETEIQRVSE 474

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>SYV_MYCGE (P47576) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 837

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +1

Query: 172 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 351
           DD   RLKSLQ+   F E +   VK  Q  +K +    +   ++++S  L + ++ + + 
Sbjct: 768 DDTTQRLKSLQKQQAFFESE---VKRSQAIVKNKSFLEKAPKEKVKSEFLKLEEYQKKLT 824

Query: 352 GNNGIVGSTT 381
             N ++   T
Sbjct: 825 ETNQLIAKLT 834

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>DXR_PELUB (Q4FM64) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 388

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 241 VKDEQKNLKRELLRAQEEVKR-IQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTI 417
           +KD+QKN K ELL   +  K+ I+ V L   + + + D N+ ++ +    N  V++ +  
Sbjct: 21  IKDDQKNFKIELLTVNKNYKKLIKQVKLFNVKNVIVTDYNSFLITTKLLKNAKVKVFNNF 80

Query: 418 N 420
           +
Sbjct: 81  D 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.137    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,339,421
Number of Sequences: 219361
Number of extensions: 291501
Number of successful extensions: 2092
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 2004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2090
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result