ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast42a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506898.1| PREDICTED Oryza sativa (japonica cultivar-group... 456 e-125
2ref|XM_467237.1| Oryza sativa (japonica cultivar-group), mRNA 456 e-125
3dbj|AK105916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 456 e-125
4dbj|AK101568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 456 e-125
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 422 e-115
6dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic D... 422 e-115
7dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic D... 422 e-115
8gb|AY023140.1| Oryza sativa microsatellite MRG5465 containing (G... 76 1e-10
9dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 74 4e-10
11emb|AL954159.4|CNS08CCX Oryza sativa chromosome 12, . BAC OSJNBa... 74 4e-10
12emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC OSJNBa... 74 4e-10
13emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa... 66 1e-07
14emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb... 66 1e-07
15gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 44 0.39
16gb|AC183492.1| Brassica oleracea Contig G, complete sequence 44 0.39
17gb|AF525618.1| Halimeda minima strain 99-075 18S ribosomal RNA g... 42 1.5
18gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.5
19gb|AE012210.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.5
20gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.5
21gb|AY649379.1| Halimeda minima voucher WLS169-02 18S ribosomal R... 42 1.5
22gb|AY649378.1| Halimeda minima voucher WLS193-02 18S ribosomal R... 42 1.5
23ref|NM_184324.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
24gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.1
25ref|NM_193298.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
26gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 6.1
27ref|XM_369812.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.1
28gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 6.1
29ref|XM_806331.1| Trypanosoma cruzi strain CL Brener dispersed ge... 40 6.1
30emb|AL445067.1|TACID5 Thermoplasma acidophilum complete genome; ... 40 6.1
31emb|CR932963.2| Medicago truncatula chromosome 5 clone mth2-115p... 40 6.1
32ref|XM_691191.1| PREDICTED: Danio rerio similar to CG4699-PA, is... 40 6.1
33emb|CR407097.1| Gallus gallus finished cDNA, clone ChEST751e3 40 6.1
34emb|BX930138.2| Gallus gallus finished cDNA, clone ChEST1017m21 40 6.1
35gb|BC004387.1|BC004387 Homo sapiens, Similar to hypothetical pro... 40 6.1
36emb|CR354031.1| Gallus gallus finished cDNA, clone ChEST462a22 40 6.1
37dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
38emb|BX931237.1| Gallus gallus finished cDNA, clone ChEST258n9 40 6.1
39dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
40dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.1
41dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
42dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
43ref|XM_551134.1| Anopheles gambiae str. PEST ENSANGP00000028284 ... 40 6.1
44ref|XM_321424.2| Anopheles gambiae str. PEST ENSANGP00000022156 ... 40 6.1
45gb|AC006538.1|AC006538 Homo sapiens chromosome 19, BAC 41195 (CI... 40 6.1 
>ref|XM_506898.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1148_D05.1
           patrial mRNA
          Length = 1652

 Score =  456 bits (230), Expect = e-125
 Identities = 317/346 (91%)
 Strand = Plus / Plus

                                                                       
Query: 81  cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 140
           ||||| |||||| ||||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct: 85  cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 144

                                                                       
Query: 141 ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 200
             ||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||
Sbjct: 145 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 204

                                                                       
Query: 201 aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 260
           |||||||||||||||||||||||||||||||||||| |||||| || | ||| ||||  |
Sbjct: 205 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 264

                                                                       
Query: 261 gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 320
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 265 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 324

                                                                       
Query: 321 agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 380
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 325 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 384

                                                         
Query: 381 ttccggccaaccctagcgaatgggacttcgatcccttctcactaac 426
           | || ||||||||   ||||||||| ||||||||||||||||||||
Sbjct: 385 tccccgccaaccccgacgaatgggatttcgatcccttctcactaac 430
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>ref|XM_467237.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1652

 Score =  456 bits (230), Expect = e-125
 Identities = 317/346 (91%)
 Strand = Plus / Plus

                                                                       
Query: 81  cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 140
           ||||| |||||| ||||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct: 85  cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 144

                                                                       
Query: 141 ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 200
             ||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||
Sbjct: 145 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 204

                                                                       
Query: 201 aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 260
           |||||||||||||||||||||||||||||||||||| |||||| || | ||| ||||  |
Sbjct: 205 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 264

                                                                       
Query: 261 gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 320
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 265 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 324

                                                                       
Query: 321 agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 380
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 325 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 384

                                                         
Query: 381 ttccggccaaccctagcgaatgggacttcgatcccttctcactaac 426
           | || ||||||||   ||||||||| ||||||||||||||||||||
Sbjct: 385 tccccgccaaccccgacgaatgggatttcgatcccttctcactaac 430
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>dbj|AK105916.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H10, full
           insert sequence
          Length = 1711

 Score =  456 bits (230), Expect = e-125
 Identities = 317/346 (91%)
 Strand = Plus / Plus

                                                                       
Query: 81  cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 140
           ||||| |||||| ||||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct: 144 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 203

                                                                       
Query: 141 ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 200
             ||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||
Sbjct: 204 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 263

                                                                       
Query: 201 aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 260
           |||||||||||||||||||||||||||||||||||| |||||| || | ||| ||||  |
Sbjct: 264 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 323

                                                                       
Query: 261 gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 320
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 324 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 383

                                                                       
Query: 321 agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 380
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 384 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 443

                                                         
Query: 381 ttccggccaaccctagcgaatgggacttcgatcccttctcactaac 426
           | || ||||||||   ||||||||| ||||||||||||||||||||
Sbjct: 444 tccccgccaaccccgacgaatgggatttcgatcccttctcactaac 489
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>dbj|AK101568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050F24, full
           insert sequence
          Length = 1688

 Score =  456 bits (230), Expect = e-125
 Identities = 317/346 (91%)
 Strand = Plus / Plus

                                                                       
Query: 81  cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 140
           ||||| |||||| ||||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct: 121 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 180

                                                                       
Query: 141 ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 200
             ||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||
Sbjct: 181 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 240

                                                                       
Query: 201 aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 260
           |||||||||||||||||||||||||||||||||||| |||||| || | ||| ||||  |
Sbjct: 241 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 300

                                                                       
Query: 261 gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 320
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 301 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 360

                                                                       
Query: 321 agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 380
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 361 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 420

                                                         
Query: 381 ttccggccaaccctagcgaatgggacttcgatcccttctcactaac 426
           | || ||||||||   ||||||||| ||||||||||||||||||||
Sbjct: 421 tccccgccaaccccgacgaatgggatttcgatcccttctcactaac 466
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  422 bits (213), Expect = e-115
 Identities = 288/313 (92%)
 Strand = Plus / Plus

                                                                            
Query: 81       cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 140
                ||||| |||||| ||||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct: 28381463 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 28381522

                                                                            
Query: 141      ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 200
                  ||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||
Sbjct: 28381523 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 28381582

                                                                            
Query: 201      aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 260
                |||||||||||||||||||||||||||||||||||| |||||| || | ||| ||||  |
Sbjct: 28381583 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 28381642

                                                                            
Query: 261      gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 320
                |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 28381643 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 28381702

                                                                            
Query: 321      agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 380
                ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 28381703 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 28381762

                             
Query: 381      ttccggccaaccc 393
                | || ||||||||
Sbjct: 28381763 tccccgccaaccc 28381775



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 407      ttcgatcccttctcactaac 426
                ||||||||||||||||||||
Sbjct: 28382305 ttcgatcccttctcactaac 28382324
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>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1148_D05
          Length = 155146

 Score =  422 bits (213), Expect = e-115
 Identities = 288/313 (92%)
 Strand = Plus / Plus

                                                                        
Query: 81   cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 140
            ||||| |||||| ||||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct: 5584 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 5643

                                                                        
Query: 141  ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 200
              ||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||
Sbjct: 5644 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 5703

                                                                        
Query: 201  aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 260
            |||||||||||||||||||||||||||||||||||| |||||| || | ||| ||||  |
Sbjct: 5704 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 5763

                                                                        
Query: 261  gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 320
            |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 5764 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 5823

                                                                        
Query: 321  agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 380
            ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 5824 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 5883

                         
Query: 381  ttccggccaaccc 393
            | || ||||||||
Sbjct: 5884 tccccgccaaccc 5896



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 407  ttcgatcccttctcactaac 426
            ||||||||||||||||||||
Sbjct: 6426 ttcgatcccttctcactaac 6445
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>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1743_B12
          Length = 175645

 Score =  422 bits (213), Expect = e-115
 Identities = 288/313 (92%)
 Strand = Plus / Plus

                                                                          
Query: 81     cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 140
              ||||| |||||| ||||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct: 173220 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 173279

                                                                          
Query: 141    ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 200
                ||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||
Sbjct: 173280 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 173339

                                                                          
Query: 201    aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 260
              |||||||||||||||||||||||||||||||||||| |||||| || | ||| ||||  |
Sbjct: 173340 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 173399

                                                                          
Query: 261    gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 320
              |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 173400 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 173459

                                                                          
Query: 321    agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 380
              ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 173460 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 173519

                           
Query: 381    ttccggccaaccc 393
              | || ||||||||
Sbjct: 173520 tccccgccaaccc 173532



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 407    ttcgatcccttctcactaac 426
              ||||||||||||||||||||
Sbjct: 174062 ttcgatcccttctcactaac 174081
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>gb|AY023140.1| Oryza sativa microsatellite MRG5465 containing (GCC)X8, closest to
           marker R2216, genomic sequence
          Length = 224

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                       
Query: 81  cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 140
           ||||| |||||| ||||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct: 151 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 210

                         
Query: 141 ccaagctgatcggc 154
             ||||| ||||||
Sbjct: 211 ggaagctcatcggc 224
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                                 
Query: 324      accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 372
                |||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 14734983 accccggcaccgtccctggccgcgttgtctccttcatcggcatgcacat 14735031



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                            
Query: 117      gcgaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacg 176
                |||||||||| |||| ||||||| | ||||| | |||||||||||  | |||||||||||
Sbjct: 11074071 gcgacccctttgtcgtcctcctcacgaagctcaccggcgagtcccgccacctgcagaacg 11074130

                             
Query: 177      acccgccggccct 189
                |||| ||||||||
Sbjct: 11074131 acccaccggccct 11074143



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                                 
Query: 324      accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 372
                |||||||||||||||| ||||||||  |||||||| |||||||||||||
Sbjct: 11074155 accccggcaccgtccctggccgcgt--tctccttcatcggcatgcacat 11074201



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 119      gaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacga 177
                |||||||| |||| ||||||| | ||||| | |||||||||||  | ||||||||||||
Sbjct: 14734897 gacccctttgtcgtcctcctcacgaagcttaccggcgagtcccgccacctgcagaacga 14734955
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                                 
Query: 324      accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 372
                |||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 14689268 accccggcaccgtccctggccgcgttgtctccttcatcggcatgcacat 14689316



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                            
Query: 117      gcgaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacg 176
                |||||||||| |||| ||||||| | ||||| | |||||||||||  | |||||||||||
Sbjct: 11073768 gcgacccctttgtcgtcctcctcacgaagctcaccggcgagtcccgccacctgcagaacg 11073827

                             
Query: 177      acccgccggccct 189
                |||| ||||||||
Sbjct: 11073828 acccaccggccct 11073840



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                                 
Query: 324      accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 372
                |||||||||||||||| ||||||||  |||||||| |||||||||||||
Sbjct: 11073852 accccggcaccgtccctggccgcgt--tctccttcatcggcatgcacat 11073898



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 119      gaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacga 177
                |||||||| |||| ||||||| | ||||| | |||||||||||  | ||||||||||||
Sbjct: 14689182 gacccctttgtcgtcctcctcacgaagcttaccggcgagtcccgccacctgcagaacga 14689240
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>emb|AL954159.4|CNS08CCX Oryza sativa chromosome 12, . BAC OSJNBa0057C04 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 131673

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                             
Query: 324  accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 372
            |||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 9102 accccggcaccgtccctggccgcgttgtctccttcatcggcatgcacat 9054



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 119  gaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacga 177
            |||||||| |||| ||||||| | ||||| | |||||||||||  | ||||||||||||
Sbjct: 9188 gacccctttgtcgtcctcctcacgaagcttaccggcgagtcccgccacctgcagaacga 9130
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>emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC OSJNBa0037B01 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 133207

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                              
Query: 324   accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 372
             |||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 83815 accccggcaccgtccctggccgcgttgtctccttcatcggcatgcacat 83767



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 119   gaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacga 177
             |||||||| |||| ||||||| | ||||| | |||||||||||  | ||||||||||||
Sbjct: 83901 gacccctttgtcgtcctcctcacgaagcttaccggcgagtcccgccacctgcagaacga 83843
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>emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa0012G19 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 157771

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                          
Query: 117    gcgaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacg 176
              |||||||||| |||| ||||||| | ||||| | |||||||||||  | |||||||||||
Sbjct: 112106 gcgacccctttgtcgtcctcctcacgaagctcaccggcgagtcccgccacctgcagaacg 112047

                           
Query: 177    acccgccggccct 189
              |||| ||||||||
Sbjct: 112046 acccaccggccct 112034



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Minus

                                                               
Query: 324    accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 372
              |||||||||||||||| ||||||||  |||||||| |||||||||||||
Sbjct: 112022 accccggcaccgtccctggccgcgt--tctccttcatcggcatgcacat 111976
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>emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 134082

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                         
Query: 117   gcgaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacg 176
             |||||||||| |||| ||||||| | ||||| | |||||||||||  | |||||||||||
Sbjct: 31504 gcgacccctttgtcgtcctcctcacgaagctcaccggcgagtcccgccacctgcagaacg 31445

                          
Query: 177   acccgccggccct 189
             |||| ||||||||
Sbjct: 31444 acccaccggccct 31432



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Minus

                                                              
Query: 324   accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 372
             |||||||||||||||| ||||||||  |||||||| |||||||||||||
Sbjct: 31420 accccggcaccgtccctggccgcgt--tctccttcatcggcatgcacat 31374
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 193     tccgcaggaggacctcgtggcg 214
               ||||||||||||||||||||||
Sbjct: 3118728 tccgcaggaggacctcgtggcg 3118749
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>gb|AC183492.1| Brassica oleracea Contig G, complete sequence
          Length = 236640

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 356    ttcgtcggcatgcacatggacgtcgt 381
              |||||||| |||||||||||||||||
Sbjct: 178263 ttcgtcggaatgcacatggacgtcgt 178288
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>gb|AF525618.1| Halimeda minima strain 99-075 18S ribosomal RNA gene, partial
            sequence; internal transcribed spacer 1, 5.8S ribosomal
            RNA gene and internal transcribed spacer 2, complete
            sequence; and 28S ribosomal RNA gene, partial sequence
          Length = 1738

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 232  gctccgcccggtctcgacgga 252
            |||||||||||||||||||||
Sbjct: 1642 gctccgcccggtctcgacgga 1662
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 212     gcgcagcacgtggtcgacgcgctcc 236
               |||||||||| ||||||||||||||
Sbjct: 4990110 gcgcagcacgcggtcgacgcgctcc 4990134
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>gb|AE012210.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 118
            of 460 of the complete genome
          Length = 10029

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 214  gcagcacgtggtcgacgcgct 234
            |||||||||||||||||||||
Sbjct: 8297 gcagcacgtggtcgacgcgct 8317
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 214     gcagcacgtggtcgacgcgct 234
               |||||||||||||||||||||
Sbjct: 3742451 gcagcacgtggtcgacgcgct 3742431
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>gb|AY649379.1| Halimeda minima voucher WLS169-02 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence; and 28S ribosomal RNA gene, partial sequence
          Length = 436

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 232 gctccgcccggtctcgacgga 252
           |||||||||||||||||||||
Sbjct: 340 gctccgcccggtctcgacgga 360
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>gb|AY649378.1| Halimeda minima voucher WLS193-02 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence; and 28S ribosomal RNA gene, partial sequence
          Length = 436

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 232 gctccgcccggtctcgacgga 252
           |||||||||||||||||||||
Sbjct: 340 gctccgcccggtctcgacgga 360
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>ref|NM_184324.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  catctccggcgccgccgctc 91
           ||||||||||||||||||||
Sbjct: 162 catctccggcgccgccgctc 143
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 357     tcgtcggcatgcacatggacgtcg 380
               ||||||||||||||||||| ||||
Sbjct: 1372223 tcgtcggcatgcacatggaggtcg 1372200
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>ref|NM_193298.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 948

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  gccgctcaaggacgccgtcg 104
           ||||||||||||||||||||
Sbjct: 63  gccgctcaaggacgccgtcg 82
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 169     gcagaacgacccgccggccctcgt 192
               |||||| |||||||||||||||||
Sbjct: 1310044 gcagaatgacccgccggccctcgt 1310021
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>ref|XM_369812.1| Magnaporthe grisea 70-15 hypothetical protein (MG06327.4) partial
            mRNA
          Length = 1425

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  ccgccggccctcgttccgca 198
            ||||||||||||||||||||
Sbjct: 1062 ccgccggccctcgttccgca 1081
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     ccggcgccgccgctcaagga 96
              ||||||||||||||||||||
Sbjct: 134038 ccggcgccgccgctcaagga 134019
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>ref|XM_806331.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
           (DGF-1) (Tc00.1047053507105.80) partial mRNA
          Length = 924

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 124 cttcgtcgccctcctcgcca 143
           ||||||||||||||||||||
Sbjct: 835 cttcgtcgccctcctcgcca 816
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>emb|AL445067.1|TACID5 Thermoplasma acidophilum complete genome; segment 5/5
          Length = 268356

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    gagagttcctcgacctccac 23
            ||||||||||||||||||||
Sbjct: 6571 gagagttcctcgacctccac 6590
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>emb|CR932963.2| Medicago truncatula chromosome 5 clone mth2-115p22, COMPLETE SEQUENCE
          Length = 133910

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 312   tcatcgtcgagtaccccggcaccgtccccggc 343
             |||||||||||||||| || ||||| ||||||
Sbjct: 33315 tcatcgtcgagtaccctggtaccgttcccggc 33346
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>ref|XM_691191.1| PREDICTED: Danio rerio similar to CG4699-PA, isoform A (LOC567884),
            mRNA
          Length = 3114

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 2    cagagagttcctcgacctccactg 25
            ||||||| ||||||||||||||||
Sbjct: 2527 cagagagatcctcgacctccactg 2504
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>emb|CR407097.1| Gallus gallus finished cDNA, clone ChEST751e3
          Length = 864

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 322 gtaccccggcaccgtccccggccgcgtc 349
           |||||| ||| |||||||||||||||||
Sbjct: 53  gtaccctggctccgtccccggccgcgtc 26
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>emb|BX930138.2| Gallus gallus finished cDNA, clone ChEST1017m21
          Length = 851

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 322 gtaccccggcaccgtccccggccgcgtc 349
           |||||| ||| |||||||||||||||||
Sbjct: 69  gtaccctggctccgtccccggccgcgtc 42
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>gb|BC004387.1|BC004387 Homo sapiens, Similar to hypothetical protein PRO1722, clone
           IMAGE:3619551, mRNA
          Length = 2732

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 gacttcgatcccttctcact 423
           ||||||||||||||||||||
Sbjct: 723 gacttcgatcccttctcact 742
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>emb|CR354031.1| Gallus gallus finished cDNA, clone ChEST462a22
          Length = 849

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 322 gtaccccggcaccgtccccggccgcgtc 349
           |||||| ||| |||||||||||||||||
Sbjct: 152 gtaccctggctccgtccccggccgcgtc 125
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 85       gccgctcaaggacgccgtcg 104
                ||||||||||||||||||||
Sbjct: 19968255 gccgctcaaggacgccgtcg 19968274



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 72      catctccggcgccgccgctc 91
               ||||||||||||||||||||
Sbjct: 2354788 catctccggcgccgccgctc 2354769
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>emb|BX931237.1| Gallus gallus finished cDNA, clone ChEST258n9
          Length = 848

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 322 gtaccccggcaccgtccccggccgcgtc 349
           |||||| ||| |||||||||||||||||
Sbjct: 65  gtaccctggctccgtccccggccgcgtc 38
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>dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0062A24
          Length = 148362

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    gccgctcaaggacgccgtcg 104
             ||||||||||||||||||||
Sbjct: 71164 gccgctcaaggacgccgtcg 71183
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 213     cgcagcacgtggtcgacgcg 232
               ||||||||||||||||||||
Sbjct: 5854762 cgcagcacgtggtcgacgcg 5854743
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>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0024G09
          Length = 175565

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    catctccggcgccgccgctc 91
             ||||||||||||||||||||
Sbjct: 83838 catctccggcgccgccgctc 83819
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>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0019D06
          Length = 167405

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     catctccggcgccgccgctc 91
              ||||||||||||||||||||
Sbjct: 138372 catctccggcgccgccgctc 138353
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>ref|XM_551134.1| Anopheles gambiae str. PEST ENSANGP00000028284 (ENSANGG00000019667),
            partial mRNA
          Length = 9543

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 342  gccgcgtcgtctccttcgtcggca 365
            |||||||||||||| |||||||||
Sbjct: 3562 gccgcgtcgtctccgtcgtcggca 3539
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>ref|XM_321424.2| Anopheles gambiae str. PEST ENSANGP00000022156 (ENSANGG00000019667),
            partial mRNA
          Length = 13383

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 342  gccgcgtcgtctccttcgtcggca 365
            |||||||||||||| |||||||||
Sbjct: 7297 gccgcgtcgtctccgtcgtcggca 7274
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>gb|AC006538.1|AC006538 Homo sapiens chromosome 19, BAC 41195 (CIT-B-31c16), complete
            sequence
          Length = 177540

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 404  gacttcgatcccttctcact 423
            ||||||||||||||||||||
Sbjct: 8749 gacttcgatcccttctcact 8730


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,313,411
Number of Sequences: 3902068
Number of extensions: 2313411
Number of successful extensions: 48709
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47940
Number of HSP's gapped (non-prelim): 765
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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