ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast42a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PUTP_SALTY (P10502) Sodium/proline symporter (Proline permease) 30 2.3
2PUTP_HAEIN (P45174) Sodium/proline symporter (Proline permease) 30 2.3
3PUTP_ECOLI (P07117) Sodium/proline symporter (Proline permease) 30 2.9
4YC9D_SCHPO (Q09887) Putative amino-acid permease C584.13 29 5.0
5FOXE3_MOUSE (Q9QY14) Forkhead box protein E3 29 6.6

>PUTP_SALTY (P10502) Sodium/proline symporter (Proline permease)|
          Length = 502

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +3

Query: 354 LLMPWVAGVALLFGFAGVISTLSSGLLPFSS 446
           L  PW+AGV L    A V+STLS  LL  SS
Sbjct: 321 LFNPWIAGVLLSAILAAVMSTLSCQLLVCSS 351



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>PUTP_HAEIN (P45174) Sodium/proline symporter (Proline permease)|
          Length = 504

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 354 LLMPWVAGVALLFGFAGVISTLSSGLLPFSS 446
           L  PW+AG+ L    A V+STLS+ LL  SS
Sbjct: 325 LFNPWIAGILLSAILAAVMSTLSAQLLISSS 355



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>PUTP_ECOLI (P07117) Sodium/proline symporter (Proline permease)|
          Length = 502

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 354 LLMPWVAGVALLFGFAGVISTLSSGLLPFSS 446
           L  PW+AG+ L    A V+STLS  LL  SS
Sbjct: 321 LFNPWIAGILLSAILAAVMSTLSCQLLVCSS 351



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>YC9D_SCHPO (Q09887) Putative amino-acid permease C584.13|
          Length = 544

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 366 WVAGVALLFGFAGVISTLSSGLLPFSSPASC 458
           W  G+A+L  FAGVI T+S    PF     C
Sbjct: 240 WSNGMAMLMSFAGVIWTMSGYDSPFHLSEEC 270



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>FOXE3_MOUSE (Q9QY14) Forkhead box protein E3|
          Length = 288

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 451 AGEEKGRRPEERVEMTPAKPKSSATPATHGMRRKPMANVTDPH 323
           AG E GR PEE V    A+P  +A P     RR+P+     P+
Sbjct: 27  AGAEPGREPEEVVGGGDAEP--TAVPGPGKRRRRPLQRGKPPY 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.128    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,079,835
Number of Sequences: 219361
Number of extensions: 428105
Number of successful extensions: 1533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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