ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast42a05 |
|---|---|
| Clone Library Name | barley_pub |
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 85.1 bits (209), Expect = 7e-17 Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 7/137 (5%) Frame = +1 Query: 4 LMTTARADAPPHGIDFPTHMPTGRFSNGLNIPDIISEYLGAEPALP-YLSPYMRGDN--- 171 L T + + P+G+DFP + TGRFSNG D IS+YLG + +P Y+ ++ +N Sbjct: 142 LDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGVKEIVPAYVDKKLQQNNELQ 201 Query: 172 ---LLVGANFASAGVGILNDTGVQFVNIIRIAQQLQNFQDYQRRLAAYIGEDAARQRVSQ 342 LL G +FAS G G L T + + + QL FQDY++R+ +G+ ++ VS+ Sbjct: 202 QSDLLTGVSFASGGAGYLPQTSESW-KVTTMLDQLTYFQDYKKRMKKLVGKKKTKKIVSK 260 Query: 343 SLVLITLGGNDFVNNYY 393 ++ G ND + Y+ Sbjct: 261 GAAIVVAGSNDLIYTYF 277
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 80.1 bits (196), Expect = 2e-15 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 11/141 (7%) Frame = +1 Query: 4 LMTTARADAPPHGIDFPTHMPTGRFSNGLNIPDIISEYLGAEPALP-YLSPYMRGDNLLV 180 L T +++ P+G+DF + TGRFSNG+ D +++Y+G + +P YL P ++ ++LL Sbjct: 221 LETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGVKEIVPAYLDPKIQPNDLLT 280 Query: 181 GANFASAGVGILNDTGVQFVNIIRIAQQLQNFQDYQRRLAAYI----------GEDAARQ 330 G +FAS G G N T + N I + QL FQDY ++ + G + Q Sbjct: 281 GVSFASGGAG-YNPTTSEAANAIPMLDQLTYFQDYIEKVNRLVRQEKSQYKLAGLEKTNQ 339 Query: 331 RVSQSLVLITLGGNDFVNNYY 393 +S+ + ++ G ND + Y+ Sbjct: 340 LISKGVAIVVGGSNDLIITYF 360
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 48.9 bits (115), Expect = 6e-06 Identities = 44/136 (32%), Positives = 58/136 (42%), Gaps = 15/136 (11%) Frame = +1 Query: 31 PPHGIDFPTHMPTGRFSNGLNIPDIISEYLGAEPALPYLSPYMR--GDNLLVGANFASAG 204 PPHG F P GR+ +G + D I+E LG LPYLS ++ G N GANFA+AG Sbjct: 53 PPHGSSF-FGSPAGRYCDGRLVIDFIAESLG----LPYLSAFLDSVGSNFSHGANFATAG 107 Query: 205 --VGILNDT-----------GVQFVNIIRIAQQLQNFQDYQRRLAAYIGEDAARQRVSQS 345 + LN T VQFV + Q + R Y S++ Sbjct: 108 SPIRALNSTLRQSGFSPFSLDVQFVQFYNFHNRSQTVRS---RGGVYKTMLPESDSFSKA 164 Query: 346 LVLITLGGNDFVNNYY 393 L +G ND Y+ Sbjct: 165 LYTFDIGQNDLTAGYF 180
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 46.2 bits (108), Expect = 4e-05 Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 2/60 (3%) Frame = +1 Query: 31 PPHGIDFPTHMPTGRFSNGLNIPDIISEYLGAEPALPYLSPYMR--GDNLLVGANFASAG 204 PP+G F H TGR+S+G I D I+E LPYLSPY+ G N GA+FA+AG Sbjct: 57 PPYGETF-FHRSTGRYSDGRLIIDFIAESFN----LPYLSPYLSSLGSNFKHGADFATAG 111
>CAC1C_HUMAN (Q13936) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) Length = 2221 Score = 34.7 bits (78), Expect = 0.11 Identities = 20/71 (28%), Positives = 31/71 (43%) Frame = -2 Query: 380 TKSLPPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTP 201 T + PPR + CL +P+ A + WK +L +F NC +++ +P P Sbjct: 96 TATRPPRALL-------CLTLKNPIRRACISIVEWKPFEIIILLTIFANCVALAIYIPFP 148 Query: 200 ADAKLAPTSRL 168 D A S L Sbjct: 149 EDDSNATNSNL 159
>CAC1C_RAT (P22002) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (RAT brain class C) (RBC) Length = 2169 Score = 34.7 bits (78), Expect = 0.11 Identities = 20/71 (28%), Positives = 31/71 (43%) Frame = -2 Query: 380 TKSLPPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTP 201 T + PPR + CL +P+ A + WK +L +F NC +++ +P P Sbjct: 126 TATRPPRALL-------CLTLKNPIRRACISIVEWKPFEIIILLTIFANCVALAIYIPFP 178 Query: 200 ADAKLAPTSRL 168 D A S L Sbjct: 179 EDDSNATNSNL 189
>CAC1C_MOUSE (Q01815) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Mouse brain class C) (MBC) (MELC-CC) Length = 2139 Score = 34.7 bits (78), Expect = 0.11 Identities = 20/71 (28%), Positives = 31/71 (43%) Frame = -2 Query: 380 TKSLPPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTP 201 T + PPR + CL +P+ A + WK +L +F NC +++ +P P Sbjct: 96 TATRPPRALL-------CLTLKNPIRRACISIVEWKPFEIIILLTIFANCVALAIYIPFP 148 Query: 200 ADAKLAPTSRL 168 D A S L Sbjct: 149 EDDSNATNSNL 159
>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Smooth muscle calcium channel blocker receptor) Length = 2171 Score = 34.7 bits (78), Expect = 0.11 Identities = 20/71 (28%), Positives = 31/71 (43%) Frame = -2 Query: 380 TKSLPPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTP 201 T + PPR + CL +P+ A + WK +L +F NC +++ +P P Sbjct: 126 TATRPPRALL-------CLTLKNPIRRACISIVEWKPFEIIILLTIFANCVALAIYIPFP 178 Query: 200 ADAKLAPTSRL 168 D A S L Sbjct: 179 EDDSNATNSNL 189
>CAC1D_CHICK (O73700) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (CHCACHA1D) Length = 2190 Score = 32.7 bits (73), Expect = 0.43 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = -2 Query: 380 TKSLPPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTP 201 + S PPR + CL+ ++P+ A + WK +L +F NC +++ +P P Sbjct: 93 SNSRPPRALF-------CLSLNNPIRRACISLVEWKPFDIFILLSIFANCVALAVYIPFP 145 Query: 200 AD 195 D Sbjct: 146 ED 147
>CAC1S_HUMAN (Q13698) Voltage-dependent L-type calcium channel alpha-1S subunit| (Voltage-gated calcium channel alpha subunit Cav1.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 3, skeletal muscle) Length = 1873 Score = 32.3 bits (72), Expect = 0.56 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = -2 Query: 365 PRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 195 P ++ + CL +P+ A + WK +L +F NC +++ +P P D Sbjct: 21 PEILPSPPRALFCLTLENPLRKACISIVEWKPFETIILLTIFANCVALAVYLPMPED 77
>CAC1S_RABIT (P07293) Voltage-dependent L-type calcium channel alpha-1S subunit| (Voltage-gated calcium channel alpha subunit Cav1.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 3, skeletal muscle) Length = 1873 Score = 32.0 bits (71), Expect = 0.73 Identities = 15/57 (26%), Positives = 25/57 (43%) Frame = -2 Query: 365 PRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 195 P V+ CL +P+ A + WK +L +F NC +++ +P P D Sbjct: 21 PEVLPRPPRALFCLTLQNPLRKACISIVEWKPFETIILLTIFANCVALAVYLPMPED 77
>CAC1S_MOUSE (Q02789) Voltage-dependent L-type calcium channel alpha-1S subunit| (Voltage-gated calcium channel alpha subunit Cav1.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 3, skeletal muscle) Length = 1880 Score = 32.0 bits (71), Expect = 0.73 Identities = 16/58 (27%), Positives = 26/58 (44%) Frame = -2 Query: 368 PPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 195 PPR + CL +P+ A + WK +L +F NC +++ +P P D Sbjct: 27 PPRALF-------CLTLQNPLRKACISIVEWKPFETIILLTIFANCVALAVYLPMPED 77
>CAC1D_MESAU (Q99244) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (Calcium channel, L type, alpha-1 polypeptide isoform 2) Length = 1610 Score = 31.2 bits (69), Expect = 1.2 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -2 Query: 329 CLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 195 CL+ ++P+ A + WK +L +F NC +++ +P P D Sbjct: 107 CLSLNNPIRRACISIVEWKPFDIFILLAIFANCVALAIYIPFPED 151
>CAC1D_HUMAN (Q01668) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 2) Length = 2161 Score = 31.2 bits (69), Expect = 1.2 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -2 Query: 329 CLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 195 CL+ ++P+ A + WK +L +F NC +++ +P P D Sbjct: 108 CLSLNNPIRRACISIVEWKPFDIFILLAIFANCVALAIYIPFPED 152
>CAC1D_RAT (P27732) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 2) (RAT brain class D) (RBD) Length = 2203 Score = 31.2 bits (69), Expect = 1.2 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -2 Query: 329 CLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 195 CL+ ++P+ A + WK +L +F NC +++ +P P D Sbjct: 108 CLSLNNPIRRACISIVDWKPFDIFILLAIFANCVALAIYIPFPED 152
>DHE4_LACBI (P54388) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)| (NADP-GDH) (NADP-dependent glutamate dehydrogenase) Length = 450 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -2 Query: 140 GSAGSAPRYSLMMSGMLSPLENLPVGMCVGKSMPWGGASAR 18 G G+ R + G L+N VGM GK + WGG+ R Sbjct: 150 GDIGTGAREIGYLFGAYKKLQNEFVGMLTGKGLAWGGSFIR 190
>CAC1D_DROME (Q24270) Voltage-dependent calcium channel type D alpha-1 subunit| (DmCa1D) Length = 2516 Score = 30.4 bits (67), Expect = 2.1 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = -2 Query: 329 CLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTP 201 CL+ +P+ A +R WK +L +F NC +++ P P Sbjct: 597 CLSVKNPLRALCIRIVEWKPFEFLILLTIFANCIALAVYTPYP 639
>K1543_MOUSE (Q80VC9) Protein KIAA1543| Length = 1252 Score = 26.2 bits (56), Expect(2) = 2.7 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -3 Query: 349 PATGSRAASPRPRRCTP 299 PATG +AASP P R P Sbjct: 746 PATGPKAASPSPARRAP 762 Score = 22.3 bits (46), Expect(2) = 2.7 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -2 Query: 230 TPVSLRMPTPADAKLAPTSRL 168 TP S + PA+ KLAP +R+ Sbjct: 775 TPRSPKHARPAELKLAPLTRV 795
>SECY_MYCGE (P47416) Preprotein translocase secY subunit| Length = 475 Score = 30.0 bits (66), Expect = 2.8 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Frame = +1 Query: 88 LNIPDIISEYLGAEPALPYLSPY-MRGDNLLVGANFASAGVGILNDTGVQFVNIIRIAQQ 264 + I I + +L +PY+ Y +R N L + G+ I+ V+F++ +R A Sbjct: 381 IRINFIGAPFLTVIAIIPYIVSYFIRLPNSL---SLGGTGIIIIVTAVVEFISALRSAAT 437 Query: 265 LQNFQDYQRRLAAYIGEDAARQRVSQ 342 N+Q +R LA + + A + + Q Sbjct: 438 ATNYQQLRRNLAIEVQQTAKQDSLEQ 463
>TAL_RHILO (Q98EV0) Probable transaldolase (EC 2.2.1.2)| Length = 218 Score = 29.6 bits (65), Expect = 3.6 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = +1 Query: 181 GANFASAGVGILNDTGVQFVNIIRIAQQLQNFQDYQRRL 297 GA+F S VG ++DTG + +I+ +Q+ + DYQ + Sbjct: 123 GASFISPFVGRIDDTGSDGMELIQEIRQIYDNYDYQTEI 161
>CAC1F_HUMAN (O60840) Voltage-dependent L-type calcium channel alpha-1F subunit| (Voltage-gated calcium channel alpha subunit Cav1.4) Length = 1966 Score = 29.6 bits (65), Expect = 3.6 Identities = 12/45 (26%), Positives = 22/45 (48%) Frame = -2 Query: 329 CLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 195 CL ++P+ + + WK +L +F NC + + +P P D Sbjct: 74 CLTLANPLRRSCISIVEWKPFDILILLTIFANCVALGVYIPFPED 118
>Y3349_STRCO (Q9X8H2) Hypothetical protein SCO3349| Length = 271 Score = 29.6 bits (65), Expect = 3.6 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 Query: 94 C*ARWRTSPWACAWGSRCRGAARPRA 17 C W TS W C +GS C+G RA Sbjct: 48 CDLTWLTSRWNCIFGSGCQGIQAGRA 73
>HUTU_CHRVO (Q7P190) Urocanate hydratase (EC 4.2.1.49) (Urocanase)| (Imidazolonepropionate hydrolase) Length = 556 Score = 29.6 bits (65), Expect = 3.6 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = -1 Query: 222 VVEDADAGGREVGADEQVVAAHVGAQVRQRRLCPEVLADDVGDVEPV-GEPPRG 64 +VEDA G+ V AA V A++ R + P+V+ D +PV G P+G Sbjct: 225 IVEDAKQSGKAVSVGLLGNAADVFAELVARGITPDVVTDQTSAHDPVHGYLPQG 278
>CAC1S_RANCA (O57483) Voltage-dependent L-type calcium channel alpha-1S subunit| (Voltage-gated calcium channel alpha subunit Cav1.1) (FGalpha1S) Length = 1688 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/58 (25%), Positives = 24/58 (41%) Frame = -2 Query: 368 PPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 195 PPR + CL +P + WK +L +F NC +++ +P P D Sbjct: 27 PPRALF-------CLGLQNPFRKFCINIVEWKPFEMIILLTIFANCVALAIFLPMPED 77
>CAC1F_MOUSE (Q9JIS7) Voltage-dependent L-type calcium channel alpha-1F subunit| (Voltage-gated calcium channel alpha subunit Cav1.4) Length = 1985 Score = 29.3 bits (64), Expect = 4.7 Identities = 12/45 (26%), Positives = 22/45 (48%) Frame = -2 Query: 329 CLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 195 CL ++P+ + + WK +L +F NC + + +P P D Sbjct: 74 CLTLTNPIRRSCISIVEWKPFDILILLTIFANCVALGVYIPFPED 118
>MSP1_SCHPO (P87320) Protein msp1, mitochondrial precursor| Length = 903 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 10/46 (21%) Frame = +1 Query: 4 LMTTARADAPPHGIDFPTH----------MPTGRFSNGLNIPDIIS 111 L+ ++A + H ++P H +PTGRFS G N+ D++S Sbjct: 442 LVPPSKAISILHNNNYPLHYGYIGVISRIVPTGRFSAGQNLTDLVS 487 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,820,519 Number of Sequences: 219361 Number of extensions: 850860 Number of successful extensions: 2753 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2706 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2749 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
