ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast41h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SL9A1_RABIT (P23791) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exc... 28 9.2
2TIF1A_MOUSE (Q64127) Transcription intermediary factor 1-alpha (... 28 9.2

>SL9A1_RABIT (P23791) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)|
           (NHE-1) (Solute carrier family 9 member 1)
          Length = 816

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 23  RSHTVISSPTDQTTPERNRAEER 91
           RSH +  SPTD TTP+   + ER
Sbjct: 33  RSHGLQLSPTDSTTPDSQPSRER 55



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>TIF1A_MOUSE (Q64127) Transcription intermediary factor 1-alpha (TIF1-alpha)|
           (Tripartite motif protein 24)
          Length = 1051

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 45  HPQTRPPRNATEQRSGKDAAEPGIGG 122
           H Q RPP N T Q        PG+ G
Sbjct: 648 HAQPRPPSNRTVQSPNSSVPSPGLAG 673


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,802,551
Number of Sequences: 219361
Number of extensions: 280629
Number of successful extensions: 1165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 80,573,946
effective HSP length: 19
effective length of database: 76,406,087
effective search space used: 1833746088
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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