ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast41h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY398368.1| Danio rerio clone RK066A1B03 KIAA0103-like protei... 42 0.40
2gb|AC093440.2| Drosophila melanogaster clone BACR34H03, complete... 42 0.40
3gb|BC060910.1| Danio rerio cDNA clone IMAGE:4144140, **** WARNIN... 42 0.40
4ref|NM_213544.1| Danio rerio zgc:86891 (zgc:86891), mRNA 42 0.40
5gb|BC071517.1| Danio rerio zgc:86891, mRNA (cDNA clone MGC:86891... 42 0.40
6gb|AE003667.3| Drosophila melanogaster chromosome 2L, section 76... 42 0.40
7gb|AC002474.1|AC002474 Drosophila melanogaster DNA sequence (P1 ... 42 0.40
8emb|BX908791.12| Zebrafish DNA sequence from clone DKEY-261H15 i... 40 1.6
9gb|AC108401.19| Mus musculus chromosome 12, clone RP24-98A23, co... 38 6.2
10gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete... 38 6.2
11gb|AC122832.4| Mus musculus BAC clone RP23-179D3 from 12, comple... 38 6.2
12gb|AC093252.3| Homo sapiens chromosome 5 clone RP11-15B5, comple... 38 6.2
13gb|AC116349.2| Homo sapiens chromosome 5 clone RP11-30F18, compl... 38 6.2
14gb|AF034099.3|AF034099 Laccaria bicolor malate synthase protein ... 38 6.2
15emb|CR926318.2| Xenopus tropicalis finished cDNA, clone TEgg046h12 38 6.2

>gb|AY398368.1| Danio rerio clone RK066A1B03 KIAA0103-like protein mRNA, complete cds
          Length = 1435

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 45   cacccacagaccagaccaccc 65
            |||||||||||||||||||||
Sbjct: 1008 cacccacagaccagaccaccc 1028



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>gb|AC093440.2| Drosophila melanogaster clone BACR34H03, complete sequence
          Length = 192132

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 89     cggcaaggatgctgctgaacccggc 113
              ||||||||||||||||||| |||||
Sbjct: 121190 cggcaaggatgctgctgaaaccggc 121214



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>gb|BC060910.1| Danio rerio cDNA clone IMAGE:4144140, **** WARNING: chimeric clone
            ****
          Length = 2260

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 45   cacccacagaccagaccaccc 65
            |||||||||||||||||||||
Sbjct: 991  cacccacagaccagaccaccc 1011



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>ref|NM_213544.1| Danio rerio zgc:86891 (zgc:86891), mRNA
          Length = 1435

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 45   cacccacagaccagaccaccc 65
            |||||||||||||||||||||
Sbjct: 1008 cacccacagaccagaccaccc 1028



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>gb|BC071517.1| Danio rerio zgc:86891, mRNA (cDNA clone MGC:86891 IMAGE:6904662),
            complete cds
          Length = 1443

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 45   cacccacagaccagaccaccc 65
            |||||||||||||||||||||
Sbjct: 1007 cacccacagaccagaccaccc 1027



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>gb|AE003667.3| Drosophila melanogaster chromosome 2L, section 76 of 83 of the complete
             sequence
          Length = 257666

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 89    cggcaaggatgctgctgaacccggc 113
             ||||||||||||||||||| |||||
Sbjct: 84182 cggcaaggatgctgctgaaaccggc 84206



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>gb|AC002474.1|AC002474 Drosophila melanogaster DNA sequence (P1 DS05709 (D73)), complete
             sequence
          Length = 44834

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 89    cggcaaggatgctgctgaacccggc 113
             ||||||||||||||||||| |||||
Sbjct: 23747 cggcaaggatgctgctgaaaccggc 23723



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>emb|BX908791.12| Zebrafish DNA sequence from clone DKEY-261H15 in linkage group 18,
             complete sequence
          Length = 66694

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    tcagctcacccacagaccagacca 62
             ||||||||||||| ||||||||||
Sbjct: 52473 tcagctcacccactgaccagacca 52450



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>gb|AC108401.19| Mus musculus chromosome 12, clone RP24-98A23, complete sequence
          Length = 213381

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 90     ggcaaggatgctgctgaac 108
              |||||||||||||||||||
Sbjct: 209376 ggcaaggatgctgctgaac 209394



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>gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete sequence
          Length = 250147

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 44     tcacccacagaccagacca 62
              |||||||||||||||||||
Sbjct: 183066 tcacccacagaccagacca 183084



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>gb|AC122832.4| Mus musculus BAC clone RP23-179D3 from 12, complete sequence
          Length = 224056

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 90     ggcaaggatgctgctgaac 108
              |||||||||||||||||||
Sbjct: 165186 ggcaaggatgctgctgaac 165168



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>gb|AC093252.3| Homo sapiens chromosome 5 clone RP11-15B5, complete sequence
          Length = 143060

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 87     agcggcaaggatgctgctg 105
              |||||||||||||||||||
Sbjct: 121021 agcggcaaggatgctgctg 121003



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>gb|AC116349.2| Homo sapiens chromosome 5 clone RP11-30F18, complete sequence
          Length = 164891

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 87    agcggcaaggatgctgctg 105
             |||||||||||||||||||
Sbjct: 78863 agcggcaaggatgctgctg 78881



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>gb|AF034099.3|AF034099 Laccaria bicolor malate synthase protein mRNA, complete cds
          Length = 1802

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 31   cacagtgatcagctcaccc 49
            |||||||||||||||||||
Sbjct: 1444 cacagtgatcagctcaccc 1426



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>emb|CR926318.2| Xenopus tropicalis finished cDNA, clone TEgg046h12
          Length = 2950

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 24   gttcacacacagtgatcagctca 46
            ||||||||||||||| |||||||
Sbjct: 1723 gttcacacacagtgagcagctca 1701


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 921,104
Number of Sequences: 3902068
Number of extensions: 921104
Number of successful extensions: 60256
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60237
Number of HSP's gapped (non-prelim): 19
length of query: 132
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 111
effective length of database: 17,151,101,840
effective search space: 1903772304240
effective search space used: 1903772304240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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