ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast41h09 |
|---|---|
| Clone Library Name | barley_pub |
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 30.0 bits (66), Expect = 2.6 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = +2 Query: 182 VVLESSPDRRTSGFAFFTWTNAFRALDALGV--GDKMRGRHLQL 307 VV++ +R+ GF F T+TN A DA+ G+ + GR +++ Sbjct: 36 VVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRV 79
>NALP6_HUMAN (P59044) NACHT-, LRR- and PYD-containing protein 6| (PYRIN-containing APAF1-like protein 5) Length = 892 Score = 29.6 bits (65), Expect = 3.4 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = -2 Query: 358 HLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEGEAGRATVRRRLQHHA 179 H+ + R + + + ++ + L+ PE E +GP EE E GRA RR H Sbjct: 125 HVLQLHARVKERNARSVKITKRFTKLLIAPESAAPEEALGPAEEPEPGRA---RRSDTHT 181 Query: 178 PNAL 167 N L Sbjct: 182 FNRL 185
>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)| Length = 1138 Score = 29.3 bits (64), Expect = 4.4 Identities = 15/56 (26%), Positives = 25/56 (44%) Frame = -2 Query: 391 MGSQFSVHPEIHLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEG 224 MGS ++ + + F + H P Q+Q +PY + +R G GP +G Sbjct: 630 MGSGYTFPAGVSVPGTFLQSTAHSPAGNQVQAGKQSHIPYSQ--QRPSGPGPMNQG 683
>PP1RA_XENLA (Q6GLQ4) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 Length = 819 Score = 28.9 bits (63), Expect = 5.8 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = -2 Query: 382 QFSVHPEIHLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGP 236 + + EI LS+ H+P P+ + S L+P E +GV P Sbjct: 482 EMGILQEIFLSKESVPDTPHEPDPESYEPSPPKLIPLDEDCSMDDGVYP 530
>LIN36_CAEEL (P34427) Protein lin-36 (Abnormal cell lineage protein 36)| Length = 962 Score = 28.9 bits (63), Expect = 5.8 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -3 Query: 396 TSWGPSFPFTRRSISRAISPVDEDMTRNPSSCRCRPLILSPTPRASSARKALVH 235 TS P F++R + ++ + PS RPLILSP + S+ R L H Sbjct: 726 TSSSPGGIFSQRVMGAVAQ--EKGPAKRPSVLSRRPLILSPRKKTSTPRPTLSH 777
>CRSP2_HUMAN (O60244) CRSP complex subunit 2 (Cofactor required for Sp1| transcriptional activation subunit 2) (Transcriptional coactivator CRSP150) (Vitamin D3 receptor-interacting protein complex 150 kDa component) (DRIP150) (Thyroid hormone receptor-ass Length = 1454 Score = 28.9 bits (63), Expect = 5.8 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Frame = +3 Query: 96 TQPRTLLLP---ALDWPASPSLWDSTGRAFGAWCWSRRRTVARPASPSSHGPTPSARLTP 266 + P T++ P A +WP SP + + A R PA+PS H P P A +P Sbjct: 1094 SSPYTMVSPSGRAGNWPGSPQVSGPSPAA--------RMPGMSPANPSLHSPVPDASHSP 1145
>PRDM8_MOUSE (Q8BZ97) PR domain zinc finger protein 8 (PR domain-containing| protein 8) Length = 687 Score = 28.5 bits (62), Expect = 7.6 Identities = 22/71 (30%), Positives = 27/71 (38%) Frame = -2 Query: 334 GRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEGEAGRATVRRRLQHHAPNALPVES 155 G + Q QQ Q + L+P P+ K GP HH P + P S Sbjct: 206 GGKEQQQQQQQQQQEAPLIPGPKFCK----AGPI---------------HHYPASSPEAS 246 Query: 154 QSDGEAGQSSA 122 G AG SSA Sbjct: 247 NPPGSAGASSA 257
>GPA1_TRIVA (Q86D96) Guanine nucleotide-binding protein alpha-1 subunit (G| alpha-1) (GTP-binding protein alpha subunit 1) Length = 402 Score = 28.5 bits (62), Expect = 7.6 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = -2 Query: 319 PQPQQLQMSASHLVPYPEGVKRAEGVGPCEEGEAGRATVRRRLQ 188 P+PQ+ A +V + A G+ C GE+G+ T R+L+ Sbjct: 61 PEPQKPAEPAPKVVAVEDDTNEAYGLLLCGAGESGKTTFTRQLK 104
>SMG7_HUMAN (Q92540) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)| Length = 1137 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/56 (26%), Positives = 25/56 (44%) Frame = -2 Query: 391 MGSQFSVHPEIHLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEG 224 MGS ++ + + F + H P Q+Q +PY + +R G GP +G Sbjct: 679 MGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQ--QRPSGPGPMNQG 732
>KARG_ANTJA (O15992) Arginine kinase (EC 2.7.3.3) (AK)| Length = 715 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 296 HLQLLGLR-VMSSSTGEIAREMDLRVNGKLGPHEVRCVQ 409 H+Q G+ S STGE A D+ +LG EV+CVQ Sbjct: 308 HIQARGIHGEHSESTGEDAGVYDISNRRRLGLSEVQCVQ 346 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 296 HLQLLGLRVMSS-STGEIAREMDLRVNGKLGPHEVRCVQ 409 H+Q G+ S STGE A D+ +LG EV+CVQ Sbjct: 660 HIQARGIHGEHSVSTGEDAGVFDISNRRRLGLSEVQCVQ 698
>LHX3_BRARE (Q90421) LIM/homeobox protein Lhx3 (Homeobox protein LIM-3)| Length = 398 Score = 28.5 bits (62), Expect = 7.6 Identities = 18/67 (26%), Positives = 27/67 (40%) Frame = -3 Query: 384 PSFPFTRRSISRAISPVDEDMTRNPSSCRCRPLILSPTPRASSARKALVHVKKAKPDVRR 205 P+FP +I + P + +P S P L P PR +LV+ + P + Sbjct: 289 PAFPLEHGAIIPSQEPYHDIQASSPYSLPQSPGPLQPLPRHQPLISSLVYPESGLPMAGQ 348 Query: 204 SGDDSST 184 SG T Sbjct: 349 SGGQDMT 355
>MYBF_ARATH (Q700D9) Putative Myb family transcription factor At1g14600| Length = 255 Score = 28.5 bits (62), Expect = 7.6 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 3/91 (3%) Frame = -2 Query: 409 LHAPDLMGSQFSVHPEIHLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCE 230 +HA DL+G Q+ P++ L +G LQM R +G E Sbjct: 37 VHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG---------SRITLLGKPE 87 Query: 229 EGEAGRATVRRRL---QHHAPNALPVESQSD 146 E + + RRR + H + LPV +++D Sbjct: 88 ESSSPSSRRRRRQDNEEDHLHDNLPVHARND 118
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 28.1 bits (61), Expect = 9.9 Identities = 19/62 (30%), Positives = 25/62 (40%) Frame = -3 Query: 396 TSWGPSFPFTRRSISRAISPVDEDMTRNPSSCRCRPLILSPTPRASSARKALVHVKKAKP 217 TSW R S+ V D PS+ +P+ PT RA+ R VK +P Sbjct: 1485 TSWATRGQAHRSSVKTPEPHVPTDPEPQPSTPTDQPVTPKPTSRATRGRARKSSVKTPEP 1544 Query: 216 DV 211 V Sbjct: 1545 AV 1546
>KI3L2_HUMAN (P43630) Killer cell immunoglobulin-like receptor 3DL2 precursor| (MHC class I NK cell receptor) (Natural killer-associated transcript 4) (NKAT-4) (p70 natural killer cell receptor clone CL-5) (CD158k antigen) Length = 455 Score = 28.1 bits (61), Expect = 9.9 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 8/82 (9%) Frame = +3 Query: 51 FYLVRKQWRPESNSRTQPRTLLLPALDWPASPSLWDSTGRAFGAW-----CWSRRR---T 206 ++L R+ E R P+ D+P P+ T R FG++ WS Sbjct: 253 YHLSREGEAHERRLRAVPKVNRTFQADFPLGPATHGGTYRCFGSFRALPCVWSNSSDPLL 312 Query: 207 VARPASPSSHGPTPSARLTPSG 272 V+ +PSS P+P+ + SG Sbjct: 313 VSVTGNPSSSWPSPTEPSSKSG 334
>TOIP1_RAT (Q5PQX1) Torsin-1A-interacting protein 1 (Lamina-associated| polypeptide 1B) (Lamina-associated polypeptide 1C) Length = 583 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -3 Query: 381 SFPFTRRSISRAI--SPVDEDMTRNPSSCRCRPLILSPTPRAS 259 S P T +++S+ +P M+ +P S CRP + SP P AS Sbjct: 167 SQPVTSQTVSKKTVRTPETSVMSEDPISNLCRPPLRSPRPDAS 209 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.129 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,795,073 Number of Sequences: 219361 Number of extensions: 1313765 Number of successful extensions: 3967 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3804 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3966 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
