ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast41h09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118I15, full insert sequence Length = 1518 Score = 115 bits (58), Expect = 1e-22 Identities = 142/170 (83%) Strand = Plus / Plus Query: 119 gccggcgctggactggccggcctcgccgtcgctctgggactccacaggaagggcgttcgg 178 |||||||| || || ||||| ||||| || || || ||||| |||||||| || | || Sbjct: 113 gccggcgccggcctcgccgggctcgcagtggccctcggactgcacaggaaaggactgagg 172 Query: 179 agcgtggtgctggagtcgtcgccggaccgtcgcacgtccggcttcgccttcttcacatgg 238 |||||||||||||||||||||||| | || |||||||| || || ||| |||||||| Sbjct: 173 agcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacatgg 232 Query: 239 accaacgccttccgcgcgcttgacgccctcggggtaggggacaagatgag 288 || |||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct: 233 acgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagatgag 282
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 111 bits (56), Expect = 2e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 177 ggagcgtggtgctggagtcgtcgccggaccgtcgcacgtccggcttcgccttcttcacat 236 |||||||||||||||||||||||||| | || |||||||| || || ||| |||||| Sbjct: 2943674 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 2943733 Query: 237 ggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagatgag 288 |||| |||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct: 2943734 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagatgag 2943785 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 233 acatggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagat 285 |||||||| ||||||||||||||||| |||||||| || || || |||||||| Sbjct: 2946754 acatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaagat 2946806 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 254 gcgcttgacgccctcggggtaggggacaagat 285 |||||||||||||| |||||||| |||||||| Sbjct: 2931586 gcgcttgacgcccttggggtaggcgacaagat 2931617 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 tgctgctccaggcgctggagg 437 ||||||||||||||||||||| Sbjct: 32478425 tgctgctccaggcgctggagg 32478405 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ggtgctggagtcgtcgccgga 204 ||||||||||||||||||||| Sbjct: 2940419 ggtgctggagtcgtcgccgga 2940439 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ggtgctggagtcgtcgccgga 204 ||||||||||||||||||||| Sbjct: 2916789 ggtgctggagtcgtcgccgga 2916809 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 254 gcgcttgacgccctcggggtaggggacaagat 285 |||||||||||||| ||||| || |||||||| Sbjct: 2916859 gcgcttgacgcccttggggtgggtgacaagat 2916890
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15, complete sequence Length = 166282 Score = 111 bits (56), Expect = 2e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 177 ggagcgtggtgctggagtcgtcgccggaccgtcgcacgtccggcttcgccttcttcacat 236 |||||||||||||||||||||||||| | || |||||||| || || ||| |||||| Sbjct: 81161 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 81220 Query: 237 ggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagatgag 288 |||| |||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct: 81221 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagatgag 81272 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 233 acatggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagat 285 |||||||| ||||||||||||||||| |||||||| || || || |||||||| Sbjct: 84241 acatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaagat 84293 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 254 gcgcttgacgccctcggggtaggggacaagat 285 |||||||||||||| |||||||| |||||||| Sbjct: 69073 gcgcttgacgcccttggggtaggcgacaagat 69104 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ggtgctggagtcgtcgccgga 204 ||||||||||||||||||||| Sbjct: 77906 ggtgctggagtcgtcgccgga 77926 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ggtgctggagtcgtcgccgga 204 ||||||||||||||||||||| Sbjct: 54276 ggtgctggagtcgtcgccgga 54296 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 254 gcgcttgacgccctcggggtaggggacaagat 285 |||||||||||||| ||||| || |||||||| Sbjct: 54346 gcgcttgacgcccttggggtgggtgacaagat 54377
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 111 bits (56), Expect = 2e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 177 ggagcgtggtgctggagtcgtcgccggaccgtcgcacgtccggcttcgccttcttcacat 236 |||||||||||||||||||||||||| | || |||||||| || || ||| |||||| Sbjct: 2943785 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 2943844 Query: 237 ggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagatgag 288 |||| |||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct: 2943845 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagatgag 2943896 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 233 acatggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagat 285 |||||||| ||||||||||||||||| |||||||| || || || |||||||| Sbjct: 2946865 acatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaagat 2946917 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 254 gcgcttgacgccctcggggtaggggacaagat 285 |||||||||||||| |||||||| |||||||| Sbjct: 2931697 gcgcttgacgcccttggggtaggcgacaagat 2931728 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 tgctgctccaggcgctggagg 437 ||||||||||||||||||||| Sbjct: 32568935 tgctgctccaggcgctggagg 32568915 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ggtgctggagtcgtcgccgga 204 ||||||||||||||||||||| Sbjct: 2940530 ggtgctggagtcgtcgccgga 2940550 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ggtgctggagtcgtcgccgga 204 ||||||||||||||||||||| Sbjct: 2916900 ggtgctggagtcgtcgccgga 2916920 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 254 gcgcttgacgccctcggggtaggggacaagat 285 |||||||||||||| ||||| || |||||||| Sbjct: 2916970 gcgcttgacgcccttggggtgggtgacaagat 2917001
>dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A09, full insert sequence Length = 1661 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 233 acatggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagat 285 |||||||| ||||||||||||||||| |||||||| || || || |||||||| Sbjct: 250 acatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaagat 302
>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete sequence Length = 145507 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 tgctgctccaggcgctggagg 437 ||||||||||||||||||||| Sbjct: 130553 tgctgctccaggcgctggagg 130533
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 411 gtaacgtgctgctccaggcgctgga 435 |||||||||||||||||||| |||| Sbjct: 3309640 gtaacgtgctgctccaggcggtgga 3309616
>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence Length = 119134 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 tgctgctccaggcgctggagg 437 ||||||||||||||||||||| Sbjct: 11874 tgctgctccaggcgctggagg 11854
>ref|XM_580001.1| PREDICTED: Rattus norvegicus LOC499665 (LOC499665), mRNA Length = 526 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 tgggactccacaggaagggcg 173 ||||||||||||||||||||| Sbjct: 479 tgggactccacaggaagggcg 459
>dbj|AK073842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067C09, full insert sequence Length = 1820 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 tgctgctccaggcgctggagg 437 ||||||||||||||||||||| Sbjct: 354 tgctgctccaggcgctggagg 374
>gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, complete sequence Length = 198404 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atctgcagctgctggggttg 316 |||||||||||||||||||| Sbjct: 39075 atctgcagctgctggggttg 39094
>gb|AC110574.9| Mus musculus chromosome 3, clone RP23-324B15, complete sequence Length = 196451 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atctgcagctgctggggttg 316 |||||||||||||||||||| Sbjct: 179553 atctgcagctgctggggttg 179572
>gb|AF530054.1| Azospirillum brasilense Yu62 clpP-tig gene cluster Length = 6369 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gctgctccaggcgctggagg 437 |||||||||||||||||||| Sbjct: 3242 gctgctccaggcgctggagg 3223
>emb|CT573086.9| Mouse DNA sequence from clone RP23-163K5 on chromosome 16, complete sequence Length = 208384 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gtcgctctgggactccacag 165 |||||||||||||||||||| Sbjct: 162423 gtcgctctgggactccacag 162442
>dbj|AP003155.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-567F3, complete sequences Length = 157385 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 gtcgctctgggactccacag 165 |||||||||||||||||||| Sbjct: 89189 gtcgctctgggactccacag 89170
>gb|AC154234.1| Mus musculus BAC clone RP24-345H5 from 16, complete sequence Length = 161505 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gacatctgcagctgctgggg 313 |||||||||||||||||||| Sbjct: 105634 gacatctgcagctgctgggg 105615
>emb|AL805960.10| Mouse DNA sequence from clone RP23-20P17 on chromosome X, complete sequence Length = 172780 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 149 gctctgggactccacaggaagggcgttc 176 |||||||||||||| |||||||| |||| Sbjct: 25897 gctctgggactccagaggaagggggttc 25924 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,732,675 Number of Sequences: 3902068 Number of extensions: 2732675 Number of successful extensions: 57292 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57101 Number of HSP's gapped (non-prelim): 187 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
