>ref|XM_475850.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 0.54
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 21 atggacagcacgagctgcctcgcggacgacgc 52
          ||||||||||||||||| |||  |||||||||
Sbjct: 1  atggacagcacgagctgtctcttggacgacgc 32

>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03,
             complete sequence
          Length = 177861

 Score = 40.1 bits (20), Expect = 0.54
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 21    atggacagcacgagctgcctcgcggacgacgc 52
             ||||||||||||||||| |||  |||||||||
Sbjct: 14057 atggacagcacgagctgtctcttggacgacgc 14088

>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05,
             complete sequence
          Length = 141715

 Score = 40.1 bits (20), Expect = 0.54
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 21    atggacagcacgagctgcctcgcggacgacgc 52
             ||||||||||||||||| |||  |||||||||
Sbjct: 89242 atggacagcacgagctgtctcttggacgacgc 89273

>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08,
              complete sequence
          Length = 166218

 Score = 40.1 bits (20), Expect = 0.54
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 21     atggacagcacgagctgcctcgcggacgacgc 52
              ||||||||||||||||| |||  |||||||||
Sbjct: 113745 atggacagcacgagctgtctcttggacgacgc 113776

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 0.54
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 21       atggacagcacgagctgcctcgcggacgacgc 52
                ||||||||||||||||| |||  |||||||||
Sbjct: 27082661 atggacagcacgagctgtctcttggacgacgc 27082692

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     agctgcctcgcggacgacg 51
              |||||||||||||||||||
Sbjct: 712333 agctgcctcgcggacgacg 712351



 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 33       agctgcctcgcggacgac 50
                ||||||||||||||||||
Sbjct: 23797032 agctgcctcgcggacgac 23797015

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     cgcggacgacgccaccacc 59
              |||||||||||||||||||
Sbjct: 446553 cgcggacgacgccaccacc 446535

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     agctgcctcgcggacgacg 51
              |||||||||||||||||||
Sbjct: 712331 agctgcctcgcggacgacg 712349



 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 33       agctgcctcgcggacgac 50
                ||||||||||||||||||
Sbjct: 23790120 agctgcctcgcggacgac 23790103

>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0090O10, complete sequence
          Length = 162132

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 33   agctgcctcgcggacgacg 51
            |||||||||||||||||||
Sbjct: 7878 agctgcctcgcggacgacg 7896

>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0005F16, complete sequence
          Length = 160053

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    agctgcctcgcggacgacg 51
             |||||||||||||||||||
Sbjct: 98214 agctgcctcgcggacgacg 98232

>dbj|AK110390.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-E03, full
           insert sequence
          Length = 2963

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 20  catggacagcacgagctgc 38
           |||||||||||||||||||
Sbjct: 207 catggacagcacgagctgc 189

>dbj|AK104314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-A08, full
           insert sequence
          Length = 1574

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 33  agctgcctcgcggacgacg 51
           |||||||||||||||||||
Sbjct: 227 agctgcctcgcggacgacg 209

>dbj|AK071309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085P06, full
           insert sequence
          Length = 1610

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 33  agctgcctcgcggacgacg 51
           |||||||||||||||||||
Sbjct: 263 agctgcctcgcggacgacg 245

>dbj|AK058286.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E01, full
           insert sequence
          Length = 1638

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 33  agctgcctcgcggacgacg 51
           |||||||||||||||||||
Sbjct: 229 agctgcctcgcggacgacg 211

>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13,
             complete sequence
          Length = 130249

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    cgcggacgacgccaccacc 59
             |||||||||||||||||||
Sbjct: 85305 cgcggacgacgccaccacc 85287

>ref|XM_482513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2754

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 13  ctactgacatggacagca 30
           ||||||||||||||||||
Sbjct: 617 ctactgacatggacagca 634

>ref|XM_481010.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3126

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 21  atggacagcacgagctgc 38
           ||||||||||||||||||
Sbjct: 473 atggacagcacgagctgc 456

>gb|AC146816.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1434D10 map
              near E1419S, complete sequence
          Length = 133421

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 33     agctgcctcgcggacgac 50
              ||||||||||||||||||
Sbjct: 106918 agctgcctcgcggacgac 106935

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 13       ctactgacatggacagca 30
                ||||||||||||||||||
Sbjct: 20771474 ctactgacatggacagca 20771457



 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 21      atggacagcacgagctgc 38
               ||||||||||||||||||
Sbjct: 9221295 atggacagcacgagctgc 9221312

>gb|AY211973.1| Engaeus affinis 28S ribosomal RNA gene, partial sequence
          Length = 600

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 38  cctcgcggacgacgccac 55
           ||||||||||||||||||
Sbjct: 203 cctcgcggacgacgccac 186

>gb|DQ001262.1| Hepatitis C virus isolate HIA316 core protein gene, partial cds
          Length = 405

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 37  gcctcgcggacgacgcca 54
           ||||||||||||||||||
Sbjct: 159 gcctcgcggacgacgcca 176

>gb|DQ001259.1| Hepatitis C virus isolate MOI297 core protein gene, partial cds
          Length = 405

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 37  gcctcgcggacgacgcca 54
           ||||||||||||||||||
Sbjct: 159 gcctcgcggacgacgcca 176

>gb|DQ001258.1| Hepatitis C virus isolate MOI261 core protein gene, partial cds
          Length = 405

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 37  gcctcgcggacgacgcca 54
           ||||||||||||||||||
Sbjct: 159 gcctcgcggacgacgcca 176

>gb|DQ001253.1| Hepatitis C virus isolate HIA346 core protein gene, partial cds
          Length = 405

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 37  gcctcgcggacgacgcca 54
           ||||||||||||||||||
Sbjct: 159 gcctcgcggacgacgcca 176

>gb|DQ001249.1| Hepatitis C virus isolate HIA271 core protein gene, partial cds
          Length = 405

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 37  gcctcgcggacgacgcca 54
           ||||||||||||||||||
Sbjct: 159 gcctcgcggacgacgcca 176

>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0036E18
          Length = 141148

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 21    atggacagcacgagctgc 38
             ||||||||||||||||||
Sbjct: 32508 atggacagcacgagctgc 32525

>dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1124_B05
          Length = 109917

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   ctactgacatggacagca 30
            ||||||||||||||||||
Sbjct: 2607 ctactgacatggacagca 2590

>dbj|AK120950.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038L09, full
            insert sequence
          Length = 5231

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 13   ctactgacatggacagca 30
            ||||||||||||||||||
Sbjct: 2728 ctactgacatggacagca 2745

>dbj|AK120066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C14, full
           insert sequence
          Length = 3160

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 21  atggacagcacgagctgc 38
           ||||||||||||||||||
Sbjct: 268 atggacagcacgagctgc 251

>dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0479C08
          Length = 152460

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 13     ctactgacatggacagca 30
              ||||||||||||||||||
Sbjct: 143927 ctactgacatggacagca 143910

>dbj|AK099948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123D13, full
           insert sequence
          Length = 1956

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 33  agctgcctcgcggacgac 50
           ||||||||||||||||||
Sbjct: 184 agctgcctcgcggacgac 167

>dbj|AK068194.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013139I18, full
           insert sequence
          Length = 2091

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 13  ctactgacatggacagca 30
           ||||||||||||||||||
Sbjct: 974 ctactgacatggacagca 991


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 219,178
Number of Sequences: 3902068
Number of extensions: 219178
Number of successful extensions: 16183
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16040
Number of HSP's gapped (non-prelim): 143
length of query: 59
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 38
effective length of database: 17,151,101,840
effective search space: 651741869920
effective search space used: 651741869920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)