| Clone Name | bast41g11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 0.57 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 acgcctccggcaccgtcgcg 49 |||||||||||||||||||| Sbjct: 1814980 acgcctccggcaccgtcgcg 1814961
>ref|XM_479794.1| Oryza sativa (japonica cultivar-group), mRNA Length = 896 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 ggacgcctccggcaccgtc 46 ||||||||||||||||||| Sbjct: 412 ggacgcctccggcaccgtc 430
>ref|XM_507100.1| PREDICTED Oryza sativa (japonica cultivar-group), P0470F10.20 mRNA Length = 931 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 ggacgcctccggcaccgtc 46 ||||||||||||||||||| Sbjct: 442 ggacgcctccggcaccgtc 460
>gb|AY224521.1| Oryza sativa (japonica cultivar-group) isolate 20551 putative serine/threonine kinase mRNA, complete cds Length = 447 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 ggacgcctccggcaccgtc 46 ||||||||||||||||||| Sbjct: 282 ggacgcctccggcaccgtc 300
>ref|XM_755657.1| Ustilago maydis 521 hypothetical protein (UM04603.1) partial mRNA Length = 2757 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 accgcccgctcccgcagca 21 ||||||||||||||||||| Sbjct: 2010 accgcccgctcccgcagca 2028
>ref|XM_808887.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506661.110) partial mRNA Length = 3234 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 accgcccgctcccgcagca 21 ||||||||||||||||||| Sbjct: 2897 accgcccgctcccgcagca 2879
>ref|XM_812961.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511245.50) partial mRNA Length = 3228 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 accgcccgctcccgcagca 21 ||||||||||||||||||| Sbjct: 2891 accgcccgctcccgcagca 2873
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 ctccggcaccgtcgcgaag 52 ||||||||||||||||||| Sbjct: 215745 ctccggcaccgtcgcgaag 215727
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 31 cgcctccggcaccgtcgcgaagg 53 ||||||| ||||||||||||||| Sbjct: 237242 cgcctcctgcaccgtcgcgaagg 237220
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14 Length = 344321 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 31 cgcctccggcaccgtcgcgaagg 53 ||||||| ||||||||||||||| Sbjct: 182934 cgcctcctgcaccgtcgcgaagg 182912
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 38.2 bits (19), Expect = 2.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 29 gacgcctccggcaccgtcgcgaagggc 55 |||| ||||||||||| |||||||||| Sbjct: 113547 gacgactccggcaccgacgcgaagggc 113521
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 gacgcctccggcaccgtcg 47 ||||||||||||||||||| Sbjct: 163054 gacgcctccggcaccgtcg 163072
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 24 gcatggacgcctccggcaccgtc 46 |||| |||||||||||||||||| Sbjct: 151641 gcatcgacgcctccggcaccgtc 151619
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 ggacgcctccggcaccgtc 46 ||||||||||||||||||| Sbjct: 963462 ggacgcctccggcaccgtc 963444
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 cgtcgcgaagggcaagaag 61 ||||||||||||||||||| Sbjct: 5850 cgtcgcgaagggcaagaag 5868
>dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470F10 Length = 185294 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 ggacgcctccggcaccgtc 46 ||||||||||||||||||| Sbjct: 126200 ggacgcctccggcaccgtc 126182
>ref|XM_555589.1| Anopheles gambiae str. PEST ENSANGP00000029455 (ENSANGG00000022629), partial mRNA Length = 1824 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 ctccggcaccgtcgcgaag 52 ||||||||||||||||||| Sbjct: 768 ctccggcaccgtcgcgaag 750
>dbj|AK103863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149E23, full insert sequence Length = 896 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 ggacgcctccggcaccgtc 46 ||||||||||||||||||| Sbjct: 412 ggacgcctccggcaccgtc 430
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 38.2 bits (19), Expect = 2.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 23 ggcatggacgcctccggcaccgtcgcg 49 |||||||||||| ||||||||| |||| Sbjct: 2445556 ggcatggacgccaccggcaccgccgcg 2445530
>dbj|AK059891.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D03, full insert sequence Length = 931 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 ggacgcctccggcaccgtc 46 ||||||||||||||||||| Sbjct: 442 ggacgcctccggcaccgtc 460
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 accgcccgctcccgcagca 21 ||||||||||||||||||| Sbjct: 668866 accgcccgctcccgcagca 668848
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 19 gcaaggcatggacgcctccggca 41 |||||||||||| |||||||||| Sbjct: 32642 gcaaggcatggatgcctccggca 32664
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 36 ccggcaccgtcgcgaagg 53 |||||||||||||||||| Sbjct: 3028335 ccggcaccgtcgcgaagg 3028318
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 43 cgtcgcgaagggcaagaa 60 |||||||||||||||||| Sbjct: 1206161 cgtcgcgaagggcaagaa 1206178
>gb|AY196994.1| Streptomyces griseoruber heda cluster, complete sequence Length = 45603 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 catggacgcctccggcac 42 |||||||||||||||||| Sbjct: 18289 catggacgcctccggcac 18306
>gb|AY498611.1| Rhodococcus opacus sulfoacetaldehyde acetyltransferase (xsc) gene, complete cds Length = 2555 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Plus Query: 9 cgctcccgcagcaaggcatgga 30 ||||||||||||| |||||||| Sbjct: 1246 cgctcccgcagcacggcatgga 1267
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 43 cgtcgcgaagggcaagaa 60 |||||||||||||||||| Sbjct: 2309913 cgtcgcgaagggcaagaa 2309896
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Plus Query: 23 ggcatggacgcctccggcaccg 44 |||||||||||| ||||||||| Sbjct: 59528 ggcatggacgccaccggcaccg 59549
>ref|XM_811529.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053505807.100) partial mRNA Length = 1296 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 cgctcccgcagcaaggca 26 |||||||||||||||||| Sbjct: 1271 cgctcccgcagcaaggca 1254
>ref|XM_805924.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509033.109) partial mRNA Length = 587 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 cgctcccgcagcaaggca 26 |||||||||||||||||| Sbjct: 562 cgctcccgcagcaaggca 545
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 43 cgtcgcgaagggcaagaa 60 |||||||||||||||||| Sbjct: 1991763 cgtcgcgaagggcaagaa 1991780
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 37 cggcaccgtcgcgaaggg 54 |||||||||||||||||| Sbjct: 2370058 cggcaccgtcgcgaaggg 2370075
>gb|AY929605.1| Uncultured sulfate-reducing bacterium clone GranDSR12 dissimilatory sulfite reductase subunit A (dsrA) and dissimilatory sulfite reductase subunit B (dsrB) genes, partial cds Length = 1905 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 28 ggacgcctccggcaccgt 45 |||||||||||||||||| Sbjct: 1590 ggacgcctccggcaccgt 1607
>gb|AY929604.1| Uncultured sulfate-reducing bacterium clone GranDSR16 dissimilatory sulfite reductase subunit A (dsrA) and dissimilatory sulfite reductase subunit B (dsrB) genes, partial cds Length = 1908 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 28 ggacgcctccggcaccgt 45 |||||||||||||||||| Sbjct: 1596 ggacgcctccggcaccgt 1613
>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16 Length = 227214 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Plus Query: 23 ggcatggacgcctccggcaccg 44 |||||||| ||||||||||||| Sbjct: 106338 ggcatggaagcctccggcaccg 106359
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 43 cgtcgcgaagggcaagaa 60 |||||||||||||||||| Sbjct: 2075178 cgtcgcgaagggcaagaa 2075195
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 accgcccgctcccgcagc 20 |||||||||||||||||| Sbjct: 73330 accgcccgctcccgcagc 73313
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 33 cctccggcaccgtcgcga 50 |||||||||||||||||| Sbjct: 5407753 cctccggcaccgtcgcga 5407770
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 36 ccggcaccgtcgcgaagg 53 |||||||||||||||||| Sbjct: 1679601 ccggcaccgtcgcgaagg 1679584
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 42 ccgtcgcgaagggcaaga 59 |||||||||||||||||| Sbjct: 4488978 ccgtcgcgaagggcaaga 4488995
>dbj|AP003017.1| Mesorhizobium loti MAFF303099 plasmid pMLb DNA, complete genome Length = 208315 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 aaggcatggacgcctccg 38 |||||||||||||||||| Sbjct: 78788 aaggcatggacgcctccg 78771
>gb|AY107124.1| Zea mays PCO135138 mRNA sequence Length = 592 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 4 ccgcccgctcccgcagca 21 |||||||||||||||||| Sbjct: 134 ccgcccgctcccgcagca 117
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 43 cgtcgcgaagggcaagaa 60 |||||||||||||||||| Sbjct: 2729152 cgtcgcgaagggcaagaa 2729169 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 277,824 Number of Sequences: 3902068 Number of extensions: 277824 Number of successful extensions: 21701 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20893 Number of HSP's gapped (non-prelim): 808 length of query: 61 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 40 effective length of database: 17,151,101,840 effective search space: 686044073600 effective search space used: 686044073600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)