ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast41g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related ... 509 e-141
2emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor ... 373 e-100
3gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, p... 58 1e-05
4gb|BC108361.1| Mus musculus keratin complex 2, basic, gene 5, mR... 42 0.87
5gb|AC104862.15| Mus musculus chromosome 15, clone RP23-124I9, co... 42 0.87
6gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 42 0.87
7ref|NM_027011.1| Mus musculus keratin complex 2, basic, gene 5 (... 42 0.87
8gb|AC120787.14| Mus musculus chromosome 15, clone RP24-180L12, c... 42 0.87
9gb|AC102312.11| Mus musculus chromosome 10, clone RP24-428L4, co... 42 0.87
10gb|AF306785.1|AF306785 Mus musculus type II keratin 5 (K5) gene,... 42 0.87
11dbj|AK014363.1| Mus musculus 17 days embryo head cDNA, RIKEN ful... 42 0.87
12gb|BC006780.1| Mus musculus keratin complex 2, basic, gene 5, mR... 42 0.87
13gb|AC158595.25| Mus musculus 10 BAC RP24-216B14 (Roswell Park Ca... 42 0.87
14gb|AC110520.12| Mus musculus chromosome 7, clone RP23-24N16, com... 40 3.4
15ref|XM_468027.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.4
16gb|AC023119.8| Homo sapiens BAC clone RP11-282B13 from 4, comple... 40 3.4
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
18dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
19gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 3.4

>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase
          Length = 1245

 Score =  509 bits (257), Expect = e-141
 Identities = 263/265 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaccaccctccctcagtcctaagtagctacctagctaggtccaggtgcaagaagaagct 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22  acacgaccctccctcagtcctaagtagctacctagctaggtccaggtgcaagaagaagct 81

                                                                       
Query: 61  cagcttcagcaatggcgtccagagcagcagcggccatcgccgtcctggccttggtctgcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  cagcttcagcaatggcgtccagagcagcagcggccatcgccgtcctggccttggtctgcg 141

                                                                       
Query: 121 ccgccgtccactcgtcggagggccagctgtcaccaaacttccacgccgccacgtgcccgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ccgccgtccactcgtcggagggccagctgtcaccaaacttccacgccgccacgtgcccgg 201

                                                                       
Query: 181 acctggagcgcatcgtggagttccacgtcgccgagacgttccggcgcgacgtgggcgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 acctggagcgcatcgtggagttccacgtcgccgagacgttccggcgcgacgtgggcgtgg 261

                                    
Query: 241 cgccggcgctcatccgcatcctctt 265
            ||||||||||||||||||||||||
Sbjct: 262 tgccggcgctcatccgcatcctctt 286



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>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene),
           cultivar Cheyenne
          Length = 1226

 Score =  373 bits (188), Expect = e-100
 Identities = 206/212 (97%)
 Strand = Plus / Plus

                                                                       
Query: 54  agaagctcagcttcagcaatggcgtccagagcagcagcggccatcgccgtcctggccttg 113
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  agaagctcagcttcagcgatggcgtccagagcagcagcggccatcgccgtcctggccttg 121

                                                                       
Query: 114 gtctgcgccgccgtccactcgtcggagggccagctgtcaccaaacttccacgccgccacg 173
           ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 122 gtctgcgccgccgtccactcgtcggagggccagctctcacccaacttccacgccgcgacg 181

                                                                       
Query: 174 tgcccggacctggagcgcatcgtggagttccacgtcgccgagacgttccggcgcgacgtg 233
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 182 tgcccggacctggagcacatcgtggagttccacgtcgccgagacgttccgccgcgacgtg 241

                                           
Query: 234 ggcgtggcgccggcgctcatccgcatcctctt 265
           ||||||||||||||||||||||||||||||||
Sbjct: 242 ggcgtggcgccggcgctcatccgcatcctctt 273



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>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds
          Length = 1308

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 213 gagacgttccggcgcgacgtgggcgtggcgccggcgctcatccgcatcctctt 265
           ||||| ||||| |||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 175 gagaccttccgccgcgacgtcggcgtcgccccggccctcatccgcatcctctt 227



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 67 cagcaatggcgtccagagcagcagcggcc 95
          |||| ||||||||||||||||||||||||
Sbjct: 23 cagccatggcgtccagagcagcagcggcc 51



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>gb|BC108361.1| Mus musculus keratin complex 2, basic, gene 5, mRNA (cDNA clone
            IMAGE:6312495), partial cds
          Length = 2253

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 58   gctcagcttcagcaatggcgt 78
            |||||||||||||||||||||
Sbjct: 1315 gctcagcttcagcaatggcgt 1295



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>gb|AC104862.15| Mus musculus chromosome 15, clone RP23-124I9, complete sequence
          Length = 168581

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 58   gctcagcttcagcaatggcgt 78
            |||||||||||||||||||||
Sbjct: 4166 gctcagcttcagcaatggcgt 4186



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>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     gcagcagcggccatcgccgtc 104
              |||||||||||||||||||||
Sbjct: 155467 gcagcagcggccatcgccgtc 155487



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>ref|NM_027011.1| Mus musculus keratin complex 2, basic, gene 5 (Krt2-5), mRNA
          Length = 2203

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 58   gctcagcttcagcaatggcgt 78
            |||||||||||||||||||||
Sbjct: 1318 gctcagcttcagcaatggcgt 1298



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>gb|AC120787.14| Mus musculus chromosome 15, clone RP24-180L12, complete sequence
          Length = 156603

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 58   gctcagcttcagcaatggcgt 78
            |||||||||||||||||||||
Sbjct: 1728 gctcagcttcagcaatggcgt 1708



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>gb|AC102312.11| Mus musculus chromosome 10, clone RP24-428L4, complete sequence
          Length = 182940

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    agctacctagctaggtccagg 46
             |||||||||||||||||||||
Sbjct: 47078 agctacctagctaggtccagg 47058



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>gb|AF306785.1|AF306785 Mus musculus type II keratin 5 (K5) gene, complete cds
          Length = 10700

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 58   gctcagcttcagcaatggcgt 78
            |||||||||||||||||||||
Sbjct: 6531 gctcagcttcagcaatggcgt 6511



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>dbj|AK014363.1| Mus musculus 17 days embryo head cDNA, RIKEN full-length enriched
           library, clone:3300001P10 product:KERATIN (FRAGMENT)
           homolog [Rattus norvegicus], full insert sequence
          Length = 969

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 58  gctcagcttcagcaatggcgt 78
           |||||||||||||||||||||
Sbjct: 102 gctcagcttcagcaatggcgt 82



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>gb|BC006780.1| Mus musculus keratin complex 2, basic, gene 5, mRNA (cDNA clone
            MGC:8116 IMAGE:3589013), complete cds
          Length = 2203

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 58   gctcagcttcagcaatggcgt 78
            |||||||||||||||||||||
Sbjct: 1318 gctcagcttcagcaatggcgt 1298



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>gb|AC158595.25| Mus musculus 10 BAC RP24-216B14 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 231740

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    agctacctagctaggtccagg 46
             |||||||||||||||||||||
Sbjct: 18129 agctacctagctaggtccagg 18149



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>gb|AC110520.12| Mus musculus chromosome 7, clone RP23-24N16, complete sequence
          Length = 248540

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     caccaccctccctcagtcct 21
             ||||||||||||||||||||
Sbjct: 61189 caccaccctccctcagtcct 61208



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>ref|XM_468027.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1095

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 83  agcagcagcggccatcgccgtcct 106
           ||||||||| ||||||||||||||
Sbjct: 752 agcagcagcagccatcgccgtcct 775



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>gb|AC023119.8| Homo sapiens BAC clone RP11-282B13 from 4, complete sequence
          Length = 184121

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     gtcctaagtagctacctagc 36
              ||||||||||||||||||||
Sbjct: 104297 gtcctaagtagctacctagc 104278



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 83       agcagcagcggccatcgccgtcct 106
                ||||||||| ||||||||||||||
Sbjct: 32631155 agcagcagcagccatcgccgtcct 32631132



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>dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1611_C08
          Length = 135386

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 83    agcagcagcggccatcgccgtcct 106
             ||||||||| ||||||||||||||
Sbjct: 58526 agcagcagcagccatcgccgtcct 58503



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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 87      gcagcggccatcgccgtcctggcc 110
               ||||| ||||||||||||||||||
Sbjct: 1205794 gcagcagccatcgccgtcctggcc 1205771


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,871,617
Number of Sequences: 3902068
Number of extensions: 1871617
Number of successful extensions: 35880
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35812
Number of HSP's gapped (non-prelim): 68
length of query: 265
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 243
effective length of database: 17,147,199,772
effective search space: 4166769544596
effective search space used: 4166769544596
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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