>SIPA1_HUMAN (Q96FS4) Signal-induced proliferation-associated protein 1 (Sipa-1)|
           (GTPase-activating protein Spa-1) (p130 SPA-1)
          Length = 1042

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 21  HSACPRAIPSRFTRRGVVSGEQRPPRPAPTSLRAH 125
           H+  PR +     R G  +GE RPP PA    RAH
Sbjct: 39  HTFEPRPVRGPLLRSGSDAGEARPPTPASPRARAH 73

>VE2_HPV05 (P06921) Regulatory protein E2|
          Length = 514

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/68 (27%), Positives = 22/68 (32%)
 Frame = -3

Query: 230 GTAPANRREGGGRSPTGXXXXXXXXXXXXRGLDKAMRAEARRGWTRRPXXXXXXXXAGES 51
           G +P   R GGGRSP                  ++ RA A    TR              
Sbjct: 314 GRSPTTCRRGGGRSPRRRSRSPSTSSSCTT--QRSQRARAESSTTRGARGSRGSRGGSRG 371

Query: 50  GRNRARAR 27
           GR R R R
Sbjct: 372 GRGRRRGR 379

>TF65_MOUSE (Q04207) Transcription factor p65 (Nuclear factor NF-kappa-B p65|
           subunit)
          Length = 549

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 45  PSRFTRRGVVSGEQRPPRPAPTSL 116
           P   TR  +V+G QRPP PAPT L
Sbjct: 496 PEAITR--LVTGSQRPPDPAPTPL 517

>SIPA1_MOUSE (P46062) Signal-induced proliferation-associated protein 1 (Sipa-1)|
           (GTPase-activating protein Spa-1)
          Length = 1037

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 33  PRAIPSRFTRRGVVSGEQRPPRPAPTSLRAH 125
           PR       R G  +GE RPP PA    RAH
Sbjct: 41  PRPARGPLLRSGSDAGEVRPPTPASPRARAH 71

>VE2_HPV5B (P26545) Regulatory protein E2|
          Length = 514

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 19/68 (27%), Positives = 23/68 (33%)
 Frame = -3

Query: 230 GTAPANRREGGGRSPTGXXXXXXXXXXXXRGLDKAMRAEARRGWTRRPXXXXXXXXAGES 51
           G +P+  R GGGRSP                  ++ RA A    TR              
Sbjct: 314 GRSPSTCRRGGGRSPRRRSRSPSTYSSCTT--QRSQRARAESPTTRGARGSRGSRGGSRG 371

Query: 50  GRNRARAR 27
           GR R R R
Sbjct: 372 GRLRRRGR 379

>TF65_HUMAN (Q04206) Transcription factor p65 (Nuclear factor NF-kappa-B p65|
           subunit)
          Length = 551

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 45  PSRFTRRGVVSGEQRPPRPAPTSLRA 122
           P   TR  +V+G QRPP PAP  L A
Sbjct: 497 PEAITR--LVTGAQRPPDPAPAPLGA 520

>T55BB_BRARE (Q66I51) Transmembrane protein 55B-B (EC 3.1.3.-) (Type I|
           phosphatidylinositol 4,5-bisphosphate 4-phosphatase-B)
           (PtdIns-4,5-P2 4-Ptase I-B)
          Length = 262

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 27  ACPRAIPSRFTRRGVVSGEQRPPRPAPTSLRAHC 128
           ACPR    R    G V+     P P PT  R  C
Sbjct: 126 ACPRPYCKRVINLGPVNPGAGSPNPQPTGARVSC 159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,402,511
Number of Sequences: 219361
Number of extensions: 350878
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)