ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast41e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic... 46 3e-05
2PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsi... 45 7e-05
3PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane ... 42 4e-04
4PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic... 42 4e-04
5PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic... 42 4e-04
6PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic... 42 4e-04
7PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic... 42 4e-04
8PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane ... 40 0.001
9PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-respons... 36 0.026
10PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening... 35 0.057

>PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1)
          Length = 289

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = +3

Query: 75  MEGKEEDVRLGANKYSERQPIVT 143
           MEGKEEDVRLGAN+YSERQPI T
Sbjct: 1   MEGKEEDVRLGANRYSERQPIGT 23



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>PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsic protein 1.3)|
           (OsPIP1.3) (Water channel protein RWC3) (RWC-3)
          Length = 288

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = +3

Query: 75  MEGKEEDVRLGANKYSERQPIVT 143
           MEGKEEDVRLGAN+Y+ERQPI T
Sbjct: 1   MEGKEEDVRLGANRYTERQPIGT 23



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>PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane intrinsic|
           protein 1.4) (Transmembrane protein C) (TMP-C)
          Length = 287

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +3

Query: 75  MEGKEEDVRLGANKYSERQPIVT 143
           MEGKEEDVR+GANK+ ERQPI T
Sbjct: 1   MEGKEEDVRVGANKFPERQPIGT 23



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>PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic protein 1c)|
           (PIP1c) (Transmembrane protein B) (TMP-B)
          Length = 286

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +3

Query: 75  MEGKEEDVRLGANKYSERQPIVT 143
           MEGKEEDVR+GANK+ ERQPI T
Sbjct: 1   MEGKEEDVRVGANKFPERQPIGT 23



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>PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic protein 1b)|
           (PIP1b) (Transmembrane protein A) (TMP-A) (AthH2)
          Length = 286

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +3

Query: 75  MEGKEEDVRLGANKYSERQPIVT 143
           MEGKEEDVR+GANK+ ERQPI T
Sbjct: 1   MEGKEEDVRVGANKFPERQPIGT 23



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>PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1)
          Length = 286

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +3

Query: 75  MEGKEEDVRLGANKYSERQPIVT 143
           MEGKEEDVR+GANK+ ERQPI T
Sbjct: 1   MEGKEEDVRVGANKFPERQPIGT 23



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>PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1)
          Length = 286

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +3

Query: 75  MEGKEEDVRLGANKYSERQPIVT 143
           MEGKEEDVR+GANK+ ERQPI T
Sbjct: 1   MEGKEEDVRVGANKFPERQPIGT 23



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>PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane intrinsic|
           protein 1d) (PIP1d)
          Length = 287

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +3

Query: 75  MEGKEEDVRLGANKYSERQPIVT 143
           MEGKEEDV +GANK+ ERQPI T
Sbjct: 1   MEGKEEDVNVGANKFPERQPIGT 23



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>PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-responsive protein|
           7a) (Turgor-responsive protein 31)
          Length = 289

 Score = 36.2 bits (82), Expect = 0.026
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +3

Query: 75  MEGKEEDVRLGANKYSERQPI 137
           ME KE+DV LGANK+ ERQP+
Sbjct: 1   MEAKEQDVSLGANKFPERQPL 21



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>PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening-associated|
           membrane protein) (RAMP)
          Length = 286

 Score = 35.0 bits (79), Expect = 0.057
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +3

Query: 78  EGKEEDVRLGANKYSERQPIVT 143
           E KEEDV+LGANK+ E QP+ T
Sbjct: 3   ENKEEDVKLGANKFRETQPLGT 24


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.304    0.128    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,173,181
Number of Sequences: 219361
Number of extensions: 237860
Number of successful extensions: 354
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 80,573,946
effective HSP length: 23
effective length of database: 75,528,643
effective search space used: 1812687432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
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