Clone Information

BLAST Search Result

Clone Name	bast41e08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	UL61_HCMVA (P16818) Hypothetical protein UL61	33	0.13
2	CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel ...	32	0.48
3	CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel al...	32	0.48
4	SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)	31	0.63
5	SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor	31	0.63
6	CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel ...	31	0.63
7	PCNT_MOUSE (P48725) Pericentrin	31	0.82
8	SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D pre...	31	0.82
9	IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2	30	1.4
10	SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)	30	1.4
11	NEURL_MOUSE (Q923S6) Neuralized-like protein 1 (m-neuralized 1) ...	30	1.4
12	PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)	30	1.8
13	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	30	1.8
14	DBF4_XENTR (Q28FY7) Protein DBF4 homolog	30	1.8
15	POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran...	30	1.8
16	CJ012_HUMAN (Q8N655) Protein C10orf12	30	1.8
17	BSN_RAT (O88778) Bassoon protein	29	2.4
18	EMIL3_HUMAN (Q9NT22) EMILIN-3 precursor (EMILIN-5) (Elastin micr...	29	2.4
19	ICAL_SHEEP (Q95208) Calpastatin (Calpain inhibitor)	29	2.4
20	RLA0_PYRHO (O74109) Acidic ribosomal protein P0 homolog (L10E)	29	3.1
21	RLA0_PYRAB (Q9UXS5) Acidic ribosomal protein P0 homolog (L10E)	29	3.1
22	LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain...	28	4.1
23	DPP6_BOVIN (P42659) Dipeptidyl aminopeptidase-like protein 6 (Di...	28	4.1
24	MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosi...	28	4.1
25	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	28	5.3
26	SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein)	28	5.3
27	KALM_HUMAN (P23352) Anosmin-1 precursor (Kallmann syndrome prote...	28	5.3
28	TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)	28	5.3
29	POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocaps...	28	5.3
30	CYP1_BRUMA (Q27450) Peptidyl-prolyl cis-trans isomerase 1 (EC 5....	28	5.3
31	ILF3_MOUSE (Q9Z1X4) Interleukin enhancer-binding factor 3	28	5.3
32	NH174_CAEEL (O17748) Nuclear hormone receptor family member nhr-174	28	6.9
33	NADE_STRA5 (Q8E1Q7) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)	28	6.9
34	NADE_STRA3 (Q8E771) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)	28	6.9
35	ADEC_DEHSC (Q3ZXH1) Adenine deaminase (EC 3.5.4.2) (Adenase) (Ad...	28	6.9
36	ERP_MYCTU (P0A5P4) Exported repetitive protein precursor (Cell s...	28	6.9
37	ERP_MYCBO (P0A5P5) Exported repetitive protein precursor (Cell s...	28	6.9
38	TF2B_SCHPO (O13749) Transcription initiation factor IIB (General...	28	6.9
39	MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (...	28	6.9
40	K10_DROME (P13468) DNA-binding protein K10 (Female sterile prote...	28	6.9
41	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	28	6.9
42	JAML1_HUMAN (Q86YT9) Junctional adhesion molecule-like precursor...	28	6.9
43	DNAA_NOCFA (Q5Z3Z8) Chromosomal replication initiator protein dnaA	27	9.0
44	VE2_HPV49 (P36795) Regulatory protein E2	27	9.0
45	POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocaps...	27	9.0
46	NOLC1_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 13...	27	9.0
47	ILF3_RAT (Q9JIL3) Interleukin enhancer-binding factor 3	27	9.0
48	CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)	27	9.0
49	CCD96_MOUSE (Q9CR92) Coiled-coil domain-containing protein 96	27	9.0
50	RSR1_YEAST (P13856) Ras-related protein RSR1	27	9.0
51	MAGH1_RAT (Q5PPP4) Melanoma-associated antigen H1 (MAGE-H1 antigen)	27	9.0
52	BIMC_EMENI (P17120) Kinesin-like protein bimC	27	9.0
53	THAP4_HUMAN (Q8WY91) THAP domain-containing protein 4	27	9.0
54	MGM1_YEAST (P32266) Protein MGM1, mitochondrial precursor [Conta...	27	9.0

>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
 Frame = -3

Query: 345 APKKPRGR------LHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSP 184
           AP+  RGR      +H     P   R SP   RD     G     GG GK    SP  + 
Sbjct: 226 APRGGRGRARTPGPVHSAAGGPGSRRRSPGAARDPGPEPGEE--RGGGGKPPLGSPRATD 283

Query: 183 EKKQTGAGQFGRPNKRL 133
             +  GAG   RP +R+
Sbjct: 284 GNRDPGAGVPARPGRRM 300

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>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2164

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 390  RGGDHGGELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGA 220
            + GD   +   ++ G PK  + R H H  + HH  P+P+  R     A  RP TG A
Sbjct: 2090 QSGDLPSKDRDQDRGRPKDRKHRPHHHHHHHHHHPPAPDRDR----YAQERPDTGRA 2142

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>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 4)
            (Brain calcium channel I) (BI) (RAT brain class A)
            (RBA-I)
          Length = 2212

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 390  RGGDHGGELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGA 220
            + GD   +   ++ G PK  + R H H  + HH  P+P+  R     A  RP TG A
Sbjct: 2138 QSGDLPSKDRDQDRGRPKDRKHRPHHHHHHHHHHPPAPDRER----YAQERPDTGRA 2190

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>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 25/87 (28%), Positives = 37/87 (42%)
 Frame = -3

Query: 372 GELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPL 193
           G+   + +GAP  P G+    ++ P    P P  P    S AG  P TG         P 
Sbjct: 299 GQAPPKASGAP--PSGQ---QRQGPPQKPPGPAGPTRQASQAGPMPRTG---------PP 344

Query: 192 LSPEKKQTGAGQFGRPNKRLVVEGNSQ 112
            + + + +G G  GRP K  + +  SQ
Sbjct: 345 TTQQPRPSGPGPAGRPAKPQLAQKPSQ 371

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>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor|
          Length = 2213

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 22/58 (37%), Positives = 25/58 (43%)
 Frame = -3

Query: 387 GGDHGGELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGK 214
           GG  GG    E AG P +PRG      R     RP PE  R   +P      T GAG+
Sbjct: 11  GGGGGGAEPPERAG-PGRPRGSPPGRARPSLAPRPGPEPSRPRAAPETPGGDTAGAGR 67

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>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2505

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 390  RGGDHGGELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPR 265
            + GD   +   +E G PK  + R H H  + HH  P P+  R
Sbjct: 2187 QSGDLPSKERDQERGRPKDRKHRQHHHHHHHHHHPPPPDKDR 2228



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
 Frame = -3

Query: 351  AGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLS-----PAGRRPLTGGAGKVSYSSPLLS 187
            +G+P+   G    H+R+  H RP  E P D          G RP  GG G+         
Sbjct: 945  SGSPRT--GADGEHRRHRAHRRPGEEGPEDKAERRARHREGSRPARGGEGE--------- 993

Query: 186  PEKKQTGAGQFGRPNKR-------LVVEGNSQRKEKKNLSR 85
                  G G  G   +R          EG+++R++K+   R
Sbjct: 994  ------GEGPDGGERRRRHRHGAPATYEGDARREDKERRHR 1028

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>PCNT_MOUSE (P48725) Pericentrin|
          Length = 1920

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -3

Query: 378  HGGELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRD--LLSPAGRRPLTGGAGKVSY 205
            H G L+ EEA  P++   R          +  SPEV R    L P    PLT G G VS 
Sbjct: 1831 HSGSLLPEEAAEPQQDPVRALDLS-----SWSSPEVVRKDPSLEPQHSLPLTPGVGTVSL 1885

Query: 204  SSPLLSPE 181
             S  +SP+
Sbjct: 1886 HSVDISPD 1893

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>SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D) (CP4)
          Length = 374

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = -3

Query: 333 PRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQF 154
           PRG +     N     P P+  R L+ P G   ++G AGK         P  KQ   G  
Sbjct: 79  PRGPVGPKGENGSAGEPGPKGERGLVGPPGSPGISGPAGKE-------GPSGKQGNIGPQ 131

Query: 153 GRPNKR 136
           G+P  +
Sbjct: 132 GKPGPK 137

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>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2|
          Length = 924

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
 Frame = -3

Query: 378 HGGELMAEEAGAPKKPRGRLHRHKRNPHHTR-------PSPEVPRDLLSPAGRRPLTGGA 220
           H G       G   KP GR  R   NP  +        P P  PR   SP+   P  GGA
Sbjct: 155 HPGMPTGPHPGPAPKPGGRPPRVGNNPFSSAQSVARPIPRPPAPRPSASPSSMSPRPGGA 214

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>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 24/87 (27%), Positives = 36/87 (41%)
 Frame = -3

Query: 372 GELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPL 193
           G+   + +G P  P G+    ++ P    P P  P    S AG  P TG         P 
Sbjct: 571 GQAPPKASGVP--PGGQ---QRQGPPQKPPGPAGPTRQASQAGPMPRTG---------PP 616

Query: 192 LSPEKKQTGAGQFGRPNKRLVVEGNSQ 112
            + + + +G G  GRP K  + +  SQ
Sbjct: 617 TTQQPRPSGPGPAGRPTKPQLAQKPSQ 643

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>NEURL_MOUSE (Q923S6) Neuralized-like protein 1 (m-neuralized 1) (m-neu1)|
          Length = 574

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
 Frame = -3

Query: 372 GELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPE-----VPRDLLSPAGRRPLTGGAGKVS 208
           G  +  E G P  P         +P  T  SP      +   LLS  G  PL G AG  +
Sbjct: 447 GSTIMTERGGPSLPC--------SPASTPTSPSALGIRLSDPLLSTCGSGPLGGSAGGTA 498

Query: 207 YSSPLLSPEKKQT-GAGQF 154
            +SP+  PE   T G GQ+
Sbjct: 499 PNSPVSLPESPVTPGLGQW 517

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>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = -3

Query: 387 GGDHGGELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPL---TGGAG 217
           G  H G+  AE+   P +PRG      +    T+P  +      S    +PL      A 
Sbjct: 167 GPSHPGDSKAEQVKQPPQPRGPQKSQLQQSEPTKPGQQQTSAKTSAGPTKPLPQQPDSAK 226

Query: 216 KVSYSSPLLSPEKKQTGA 163
             S + P   P  +Q+G+
Sbjct: 227 TSSQAPPPTKPSLQQSGS 244

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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 25/87 (28%), Positives = 36/87 (41%)
 Frame = -3

Query: 372 GELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPL 193
           G    + +GAP  P G+    ++ P    P P  P    S AG  P TG         P 
Sbjct: 571 GPAPTKASGAP--PGGQ---QRQGPPQKPPGPAGPTRQASQAGPGPRTG---------PP 616

Query: 192 LSPEKKQTGAGQFGRPNKRLVVEGNSQ 112
            + + + +G G  GRP K  + +  SQ
Sbjct: 617 TTQQPRPSGPGPAGRPAKPQLAQKPSQ 643

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>DBF4_XENTR (Q28FY7) Protein DBF4 homolog|
          Length = 663

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 213 VSYSSPLLSPEKKQ-TGAGQFGRPNKRLVVEGNSQRKEKKNL 91
           + Y   + SPE  Q TG       N+RL  EGNS +K +K+L
Sbjct: 76  LKYVCSVPSPEPAQNTGESSTSPGNRRLPQEGNSSKKNEKSL 117

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>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from transposon gypsy|
           [Includes: Reverse transcriptase (EC 2.7.7.49);
           Endonuclease]
          Length = 1035

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 207 YSSPLLSPEKKQTGAGQFGRPNKRLVVE 124
           Y+SP    +KK T A  FG PNKRLV++
Sbjct: 217 YNSPTWVVDKKGTDA--FGNPNKRLVID 242

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>CJ012_HUMAN (Q8N655) Protein C10orf12|
          Length = 1247

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = -3

Query: 342  PKKPRGRL---HRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQ 172
            PKK  G+     R ++   + RPS  +  + L+   ++    GAG+ S S P  +  +KQ
Sbjct: 1150 PKKSAGKSCPPSRKEKENTNKRPSQSIASETLTKPAKQK---GAGESS-SRPQKATNRKQ 1205

Query: 171  TGAGQFGRPNKRLVVEGNSQRKEK 100
            +      RP+ +      +QRK K
Sbjct: 1206 SSGKTRARPSTKTPESSAAQRKRK 1229

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>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
 Frame = -3

Query: 384  GDHGGELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEV-PRDLLSPAGRRPLTGGAGKVS 208
            GDHG          P +   R H      H TRP P+  P   +   G+    G      
Sbjct: 3642 GDHGRHSGRHAGEEPGRRAARPHARDMGRHETRPHPQASPAPAMQKKGQ---PGYPSSAD 3698

Query: 207  YSSPLLSP 184
            YS P  +P
Sbjct: 3699 YSQPSRAP 3706

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>EMIL3_HUMAN (Q9NT22) EMILIN-3 precursor (EMILIN-5) (Elastin microfibril|
           interface-located protein 5) (Elastin microfibril
           interfacer 5)
          Length = 766

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = -3

Query: 285 PSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQFGRPNKRLVVEGNSQR 109
           P P++P   L P  R P        SYS    SP  ++ G G FG   +RL  EG+ QR
Sbjct: 145 PEPQIPSGQLDPGPRPP--------SYSRAAPSPHGRK-GPGLFGERLERL--EGDVQR 192

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>ICAL_SHEEP (Q95208) Calpastatin (Calpain inhibitor)|
          Length = 723

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 348 GAPKKP-RGRLHRHKRNPHHTRPSPEVPRDLLSPA 247
           G P KP R    RH+R+P H R + +VPR  L+P+
Sbjct: 631 GTPGKPKRSESPRHQRSPRHQR-NLQVPRTPLTPS 664

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>RLA0_PYRHO (O74109) Acidic ribosomal protein P0 homolog (L10E)|
          Length = 342

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 315 RHKRNPHHTRPSPEVPRDLLSPAGRRPLTGG 223
           +  R P   +P   VP+D++ PAG  PL  G
Sbjct: 104 QQNRQPAPAKPGAVVPKDVVVPAGPTPLAPG 134

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>RLA0_PYRAB (Q9UXS5) Acidic ribosomal protein P0 homolog (L10E)|
          Length = 341

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 315 RHKRNPHHTRPSPEVPRDLLSPAGRRPLTGG 223
           +  R P   +P   VP+D++ PAG  PL  G
Sbjct: 104 QQNRQPAPAKPGAVVPKDVVIPAGPTPLAPG 134

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>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)|
          Length = 624

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
 Frame = -3

Query: 360 AEEAGAPKKP----RGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAG-----KVS 208
           AE A  P++P    RG  HRH       R +PE P +        P     G     +VS
Sbjct: 416 AEPAAGPEEPSHFLRGAPHRHSMPELGLRSAPEPPTESPGHPAPHPDDNAFGRQSTPRVS 475

Query: 207 YSSPLLS 187
           +  PL+S
Sbjct: 476 FRDPLVS 482

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>DPP6_BOVIN (P42659) Dipeptidyl aminopeptidase-like protein 6|
           (Dipeptidylpeptidase VI) (Dipeptidylpeptidase 6)
           (Dipeptidyl peptidase IV-like protein) (Dipeptidyl
           aminopeptidase-related protein) (DPPX)
          Length = 863

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = -3

Query: 309 KRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQFGRPNKRLV 130
           K N   + P+P     LL   G      G   +   +P  +P ++  G G  GRP  +  
Sbjct: 11  KINTSRSFPAPPEASRLLGGQGPEEDGAGPKPLGAQAPAAAPRERGGGGGAGGRPRFQYQ 70

Query: 129 VEGNSQRKEK---KNLSRFSY*GTSIFVLVIVV 40
              +   +++    N  + ++ G +I +LVI+V
Sbjct: 71  ARSDCDDEDELVGSNPPQRNWKGIAIALLVILV 103

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>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 20/80 (25%)
 Frame = -3

Query: 342 PKKPRGRLHRHK---RNPHHTRP---------------SPEVPRDLLSPAGRRPLTGGAG 217
           P  P G L RH      P H  P               SPEVP DLL+  G RP   G+ 
Sbjct: 690 PASPYGSLRRHPPPWAAPAHVPPAPQASGWAFVEPPAVSPEVPPDLLAFPGPRPSFRGSR 749

Query: 216 K--VSYSSPLLSPEKKQTGA 163
           +   ++  P  SP   +  A
Sbjct: 750 RRGAAFGFPGASPRASRRRA 769

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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -3

Query: 315 RHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQFGRPNKR 136
           + ++ P    P P  P    S AG  P TG         P  + + + +G G  GRP K 
Sbjct: 583 QQRQGPPQKPPGPAGPIRQASQAGPGPRTG---------PPTTQQPRPSGPGPAGRPTKP 633

Query: 135 LVVEGNSQ 112
            + +  SQ
Sbjct: 634 QLAQKPSQ 641

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>SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein)|
          Length = 1186

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = -1

Query: 275 RSREISSALRGGDRSQEEQARLATPLLXXXXXXSKPERDNSAGRTRGWWWKGTHKEKK 102
           +S E S++     RS +E A  ++            E D   G   GWWW   +K ++
Sbjct: 459 QSDEKSASQSSSSRSSQESASYSSSSSSSTLSEDSSEVDIDLGNL-GWWWNSDNKVQR 515

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>KALM_HUMAN (P23352) Anosmin-1 precursor (Kallmann syndrome protein) (Adhesion|
           molecule-like X-linked)
          Length = 680

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 342 PKKPRGRLHRHKRNPHHTRPSPE 274
           P     R H   R+PHH +PSPE
Sbjct: 656 PPSSAHRSHLKHRHPHHYKPSPE 678

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>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)|
          Length = 542

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 22/75 (29%), Positives = 31/75 (41%)
 Frame = -3

Query: 381 DHGGELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYS 202
           D G E  +    AP++P+ R    +R       +PE P     P G +P   GAG+    
Sbjct: 15  DSGHEEESLSPEAPRRPKQRPAPAQRLRKKRTEAPESP----CPTGSKPRKPGAGRRGRP 70

Query: 201 SPLLSPEKKQTGAGQ 157
               SP+  Q  A Q
Sbjct: 71  REEPSPDPAQARAPQ 85

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>POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -3

Query: 372 GELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPL 193
           G+    ++G P++PRG   R +R      P P  P +      + P    A K S + P 
Sbjct: 49  GDDSGRDSGGPRRPRGNRGRGQRRDWSRAPPP--PEERQESRSQTP----APKPSRAPPQ 102

Query: 192 L-SPEKKQTGAG 160
              P + QTG G
Sbjct: 103 QPQPPRMQTGRG 114

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>CYP1_BRUMA (Q27450) Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (PPIase|
           1) (Cyclophilin) (BmCYP-1)
          Length = 843

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -3

Query: 336 KPRGRLHRHKRNPHHTRPSPE-VPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAG 160
           K   + +RH+R+ H TR SPE V R  +    R  +              S + KQT   
Sbjct: 389 KSEKKENRHERSRHTTRRSPEHVTRHFVKEKNRHKVDEVGN---------SEDMKQTKRD 439

Query: 159 QFGRPNKRLVVEGNSQR 109
           + GR +++  VE N ++
Sbjct: 440 RRGRADEKEKVEVNGEK 456

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>ILF3_MOUSE (Q9Z1X4) Interleukin enhancer-binding factor 3|
          Length = 898

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -3

Query: 249 AGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQ-----FGRPNKRLVVEGNSQ 112
           AG++PL GG  K SYSS   S + +Q    Q     +G P  +    G+ Q
Sbjct: 732 AGKKPLHGGQQKASYSSGYQSHQGQQQPYNQSQYSSYGTPQGKQKGYGHGQ 782

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>NH174_CAEEL (O17748) Nuclear hormone receptor family member nhr-174|
          Length = 382

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +2

Query: 29  NIYSTTITNTKILVPQ*ENLDKFFFSF----------LCEFPSTTNLLFGRPNCPAPVCF 178
           N Y  +I NT++      N+ +F  S           +CEFPS   L FG   C A   F
Sbjct: 36  NQYLRSIRNTEV------NVKRFLSSVFDLLTDPVCPVCEFPSNVELHFGGLVCGACAAF 89

Query: 179 F 181
           F
Sbjct: 90  F 90

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>NADE_STRA5 (Q8E1Q7) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)|
          Length = 273

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 161 DNSAGRTRGWWWKGTHKEKKRKTCLD 84
           D S G    WW+KG HK     T  D
Sbjct: 244 DKSRGIIENWWYKGQHKRHLPITIFD 269

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>NADE_STRA3 (Q8E771) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)|
          Length = 273

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 161 DNSAGRTRGWWWKGTHKEKKRKTCLD 84
           D S G    WW+KG HK     T  D
Sbjct: 244 DKSRGIIENWWYKGQHKRHLPITIFD 269

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>ADEC_DEHSC (Q3ZXH1) Adenine deaminase (EC 3.5.4.2) (Adenase) (Adenine aminase)|
          Length = 571

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 378 HGGELMAEEAGAPKKPRGRLHRHKRNPHHTRP 283
           H G+L+AE+  A  KP+ R+ +   N  H RP
Sbjct: 342 HKGKLVAEKGQALFKPQSRIPKSLLNSIHIRP 373

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>ERP_MYCTU (P0A5P4) Exported repetitive protein precursor (Cell surface|
           protein pirG) (EXP53)
          Length = 284

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 303 NPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPL 193
           NP  T P+   P  L SP G  P  GGA ++  ++P+
Sbjct: 148 NPALTSPTGATP-GLTSPTGLDPALGGANEIPITTPV 183

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>ERP_MYCBO (P0A5P5) Exported repetitive protein precursor (Cell surface|
           protein pirG) (EXP53)
          Length = 284

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 303 NPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPL 193
           NP  T P+   P  L SP G  P  GGA ++  ++P+
Sbjct: 148 NPALTSPTGATP-GLTSPTGLDPALGGANEIPITTPV 183

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>TF2B_SCHPO (O13749) Transcription initiation factor IIB (General transcription|
           factor TFIIB)
          Length = 340

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 214 LACSSCERSPPRRAEEISR-DLGTGACMMGISLMPMKTPTRLLWST 348
           + CS C   PP   EE S  D   G+C  G+ L      TR  W T
Sbjct: 18  MICSECREDPPNLVEEFSSGDTVCGSC--GLVLGDRIIDTRSEWRT 61

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>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 870

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -3

Query: 285 PSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSP 184
           P P  P++L SP G RP T    K S SS L  P
Sbjct: 281 PLPSKPQELASPPGGRP-TPAPRKASESSALTPP 313

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>K10_DROME (P13468) DNA-binding protein K10 (Female sterile protein K10)|
          Length = 463

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
 Frame = -3

Query: 378 HGGELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEV----PRDLLSPAGRRPLTGGAGKV 211
           +G +        P + RG  +  +R P   RP P +    P   + P  R P   G G  
Sbjct: 200 NGSDWQRHPGNNPNQIRGGFNGFQRGPPPNRPPPRLMMGPPMGPMGPGPRGPGPMGPGGP 259

Query: 210 SYSSPLLSPEKKQTGAGQFG 151
               P   P     G G  G
Sbjct: 260 YPQMPFPPPVPGMRGPGPMG 279

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 23/80 (28%), Positives = 33/80 (41%)
 Frame = -3

Query: 372 GELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPL 193
           G    + +GAP  P G+    ++ P    P P  P    S AG  P TG         P 
Sbjct: 571 GPAPPKASGAP--PGGQ---QRQGPPQKPPGPAGPTRQASQAGPVPRTG---------PP 616

Query: 192 LSPEKKQTGAGQFGRPNKRL 133
            + + + +G G  GRP  +L
Sbjct: 617 TTQQPRPSGPGPAGRPKPQL 636

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>JAML1_HUMAN (Q86YT9) Junctional adhesion molecule-like precursor (Dendritic|
           cell-specific protein CREA7-1) (Adhesion molecule
           interacting with CXADR antigen 1)
          Length = 394

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 282 SPEVPRDLLSPAGRRPLTGGAGKV 211
           SPE PR L++PA  RPL  G  ++
Sbjct: 252 SPEEPRTLVTPAALRPLVLGGNQL 275

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>DNAA_NOCFA (Q5Z3Z8) Chromosomal replication initiator protein dnaA|
          Length = 662

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/70 (28%), Positives = 26/70 (37%)
 Frame = -3

Query: 345 APKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTG 166
           AP  P     R   NP H R +    R    P G RP+ G  G+ +   P   P   Q  
Sbjct: 94  APATPTAE--RAAANPRHARMTSRPER----PRGERPVPGLPGQEAVDRPETLPRYSQAA 147

Query: 165 AGQFGRPNKR 136
               G P ++
Sbjct: 148 ESVPGYPARQ 157

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>VE2_HPV49 (P36795) Regulatory protein E2|
          Length = 488

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/85 (23%), Positives = 36/85 (42%)
 Frame = -3

Query: 339 KKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAG 160
           ++ R R    +R    +R          S +  R   G  G V+ S    SP++ + G G
Sbjct: 281 RRSRSRTRTRRREASTSRSQKASRSRSRSRSTSRGSRGSGGSVTTSRDS-SPKRTRRGRG 339

Query: 159 QFGRPNKRLVVEGNSQRKEKKNLSR 85
           + GR  +       S+R+ +++ SR
Sbjct: 340 RGGRSRRSPTPTSTSKRERRRSRSR 364

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>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 992

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = -3

Query: 351 AGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQ 172
           AGA +  R R  RH R  H    +P V  +  +P    P TG   +  +S     PE++Q
Sbjct: 29  AGASQSRRPRPPRHARLQHLPEMTPAVTPEGPAP----PRTGAWQRKDWSRAPPPPEERQ 84

Query: 171 TGAGQFGRP 145
               Q   P
Sbjct: 85  ESRSQTPAP 93

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>NOLC1_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)|
           (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar
           and coiled-body phosphoprotein 1)
          Length = 699

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 22/91 (24%), Positives = 39/91 (42%)
 Frame = -3

Query: 360 AEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPE 181
           +E+  AP KP G        P  T  SP V     + A ++P+ GG   ++  +   S E
Sbjct: 371 SEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKP---AAAPKQPVGGGQKLLTRKADSSSSE 427

Query: 180 KKQTGAGQFGRPNKRLVVEGNSQRKEKKNLS 88
           ++ + + +     K++V     +   K  LS
Sbjct: 428 EESSSSEE--EKTKKMVATTKPKATAKAALS 456

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>ILF3_RAT (Q9JIL3) Interleukin enhancer-binding factor 3|
          Length = 897

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -3

Query: 249 AGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQ-----FGRPNKRLVVEGNSQ 112
           AG++PL GG  K SYSS   S + +Q    Q     +G P  +    G+ Q
Sbjct: 732 AGKKPLHGGQQKPSYSSGYQSHQGQQQPYNQSQYSSYGTPQGKQKGYGHGQ 782

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>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)|
          Length = 1430

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = -3

Query: 342 PKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGA 163
           PK+ R   H H        P P  PR +L P+G          VS+ +P  +P K Q G+
Sbjct: 742 PKEVRSSRHGHSVKRASVPPVPGKPRQVL-PSG----------VSHFTPPQTPTKAQPGS 790

Query: 162 GQ 157
            Q
Sbjct: 791 PQ 792

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>CCD96_MOUSE (Q9CR92) Coiled-coil domain-containing protein 96|
          Length = 584

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 357 EEAGAPKKPRGRLHRHKRNPHHTRPS 280
           EE   P+KP+G+  R KR     RPS
Sbjct: 146 EERDRPEKPKGKGKREKRKESRFRPS 171

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>RSR1_YEAST (P13856) Ras-related protein RSR1|
          Length = 272

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 225 GAGKVSYSSPLLSPEKKQTGAGQFGRPNKRLVVEGNSQRKEKKNLS 88
           G  KV  S+P+    K      + G  N+  +   + Q+K+KKN S
Sbjct: 222 GQAKVKQSTPVNEKHKPSHAVPKSGSSNRTGISATSQQKKKKKNAS 267

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>MAGH1_RAT (Q5PPP4) Melanoma-associated antigen H1 (MAGE-H1 antigen)|
          Length = 218

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
 Frame = -3

Query: 333 PRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSP--LLSPEKKQTGAG 160
           PRGR  R +RN      +    +   S A + P+   A  V+ S+P   LS  ++ T   
Sbjct: 2   PRGRKSRRRRNAKAAEENRNNRKIQASEASKTPM---AASVTPSTPEEYLSGPEEDTSTP 58

Query: 159 QFGRPNKRLVVEGNSQRKEKKNLSRFSY*GTSIFVLVIVVEYIF 28
           +        + E +S    +K ++R ++ GT   +L+ ++  IF
Sbjct: 59  E---KASSTLAEASSTALVQKPVTRSNFQGTKKSLLMSILALIF 99

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>BIMC_EMENI (P17120) Kinesin-like protein bimC|
          Length = 1184

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -3

Query: 312  HKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYS---SPLLSPEKKQTGAGQFGRPN 142
            H     +  PS    R++ +    RPL    G+ S     SP++SP+      G  G P+
Sbjct: 1075 HAPTVTNVNPSNTGLREVDANVAARPLVYSTGEKSTDQDGSPVVSPDSATEAEGMNGPPS 1134

Query: 141  KR 136
            KR
Sbjct: 1135 KR 1136

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>THAP4_HUMAN (Q8WY91) THAP domain-containing protein 4|
          Length = 577

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 327 GRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEK 178
           G LH +  +  HTR  P VPR+   P  R+ L     + S S   L P+K
Sbjct: 233 GSLHSYSFSSKHTRERPSVPRE---PIDRKRLKKDV-EPSCSGSSLGPDK 278

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>MGM1_YEAST (P32266) Protein MGM1, mitochondrial precursor [Contains: Protein|
           MGM1 isoform 1; Protein MGM1 isoform 2]
          Length = 881

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 5   DQCPPQGKNIYSTTITNTKILVPQ*ENLDKFFFSFLCEFPSTTNLL 142
           D+CP    +  S  +T+T +L    E L  FF++F  E      LL
Sbjct: 784 DRCPEVFLSAVSDKLTSTAVLFLNVELLSDFFYNFPIELDRRLTLL 829


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,645,758
Number of Sequences: 219361
Number of extensions: 1252476
Number of successful extensions: 4244
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 4030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4236
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result