>gb|AY105374.1| Zea mays PCO116128 mRNA sequence
          Length = 623

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 87/104 (83%)
 Strand = Plus / Plus

                                                                       
Query: 165 gtggatggtgcattgcggcggcgggcttgtcgccgccgtgcctcctgatggttggtacga 224
           ||||||| ||||||||||  ||| ||| | ||| || |||||||| ||||| ||||||||
Sbjct: 203 gtggatgctgcattgcggaagcgagctcgccgcggcggtgcctccagatggctggtacga 262

                                                       
Query: 225 ttacactgcccacacggactgcagaggtcacccggagccggcgc 268
           |||| | ||| |||| |||||||| || || |||||||||||||
Sbjct: 263 ttactccgcctacaccgactgcaggggccagccggagccggcgc 306

>gb|AE006002.1| Caulobacter crescentus CB15 section 328 of 359 of the complete genome
          Length = 14142

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 180  cggcggcgggcttgtcgccgcc 201
            ||||||||||||||||||||||
Sbjct: 3562 cggcggcgggcttgtcgccgcc 3583

>gb|AY544858.1| Mycobacterium pulveris strain CIP 106804 superoxide dismutase (sod)
           gene, partial cds
          Length = 442

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 183 cggcgggcttgtcgccgccgtg 204
           ||||||||||||||||||||||
Sbjct: 201 cggcgggcttgtcgccgccgtg 180

>gb|AC096938.8| Rattus norvegicus 16 BAC CH230-49B24 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 220401

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 48   gaaggtcgtgtttgagcacac 68
            |||||||||||||||||||||
Sbjct: 1439 gaaggtcgtgtttgagcacac 1419

>gb|AC117058.19| Rattus norvegicus 16 BAC CH230-318I9 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 181157

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 48     gaaggtcgtgtttgagcacac 68
              |||||||||||||||||||||
Sbjct: 106891 gaaggtcgtgtttgagcacac 106911

>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 179     gcggcggcgggcttgtcgccg 199
               |||||||||||||||||||||
Sbjct: 1906735 gcggcggcgggcttgtcgccg 1906715

>ref|NM_188793.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 684

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 cggcggcgggcttgtcgccg 199
           ||||||||||||||||||||
Sbjct: 520 cggcggcgggcttgtcgccg 501

>ref|XM_450354.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 345

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 179 gcggcggcgggcttgtcgccgccg 202
           |||||||||||| |||||||||||
Sbjct: 160 gcggcggcgggcgtgtcgccgccg 137

>gb|AY022841.1| Oryza sativa microsatellite MRG5166 containing (CGC)X11, closest to
           marker R654, genomic sequence
          Length = 233

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 184 ggcgggcttgtcgccgccgt 203
           ||||||||||||||||||||
Sbjct: 33  ggcgggcttgtcgccgccgt 52

>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete
             sequence
          Length = 121849

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   ggcgggcttgtcgccgccgt 203
             ||||||||||||||||||||
Sbjct: 51670 ggcgggcttgtcgccgccgt 51651

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 184      ggcgggcttgtcgccgccgt 203
                ||||||||||||||||||||
Sbjct: 27127221 ggcgggcttgtcgccgccgt 27127240

>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
          Length = 182756

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    cggcggcgggcttgtcgccg 199
              ||||||||||||||||||||
Sbjct: 167372 cggcggcgggcttgtcgccg 167391

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 179     gcggcggcgggcttgtcgccgccg 202
               |||||||||||| |||||||||||
Sbjct: 4362799 gcggcggcgggcgtgtcgccgccg 4362776

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 184      ggcgggcttgtcgccgccgt 203
                ||||||||||||||||||||
Sbjct: 27218544 ggcgggcttgtcgccgccgt 27218563

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 180     cggcggcgggcttgtcgccg 199
               ||||||||||||||||||||
Sbjct: 8203251 cggcggcgggcttgtcgccg 8203270

>dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034C11
          Length = 139399

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    cggcggcgggcttgtcgccg 199
              ||||||||||||||||||||
Sbjct: 120969 cggcggcgggcttgtcgccg 120988

>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1279D09
          Length = 134793

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 179   gcggcggcgggcttgtcgccgccg 202
             |||||||||||| |||||||||||
Sbjct: 65617 gcggcggcgggcgtgtcgccgccg 65594

>dbj|AK104378.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G11, full
           insert sequence
          Length = 2110

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ggcgggcttgtcgccgccgt 203
           ||||||||||||||||||||
Sbjct: 186 ggcgggcttgtcgccgccgt 167

>dbj|AK099910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D12, full
           insert sequence
          Length = 1894

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ggcgggcttgtcgccgccgt 203
           ||||||||||||||||||||
Sbjct: 195 ggcgggcttgtcgccgccgt 176

>dbj|AK099321.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020I22, full
           insert sequence
          Length = 2131

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ggcgggcttgtcgccgccgt 203
           ||||||||||||||||||||
Sbjct: 191 ggcgggcttgtcgccgccgt 172

>dbj|AK099244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116N10, full
           insert sequence
          Length = 2115

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ggcgggcttgtcgccgccgt 203
           ||||||||||||||||||||
Sbjct: 191 ggcgggcttgtcgccgccgt 172

>dbj|AK099218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013083D05, full
           insert sequence
          Length = 2107

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ggcgggcttgtcgccgccgt 203
           ||||||||||||||||||||
Sbjct: 191 ggcgggcttgtcgccgccgt 172

>dbj|AK065253.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J10, full
           insert sequence
          Length = 2162

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ggcgggcttgtcgccgccgt 203
           ||||||||||||||||||||
Sbjct: 188 ggcgggcttgtcgccgccgt 169

>dbj|AK061046.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E11, full
           insert sequence
          Length = 1039

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 cggcggcgggcttgtcgccg 199
           ||||||||||||||||||||
Sbjct: 620 cggcggcgggcttgtcgccg 601

>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 87      tcggcgctagctagcttgcc 106
               ||||||||||||||||||||
Sbjct: 1224192 tcggcgctagctagcttgcc 1224173


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,838,941
Number of Sequences: 3902068
Number of extensions: 1838941
Number of successful extensions: 30634
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30536
Number of HSP's gapped (non-prelim): 98
length of query: 271
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 249
effective length of database: 17,147,199,772
effective search space: 4269652743228
effective search space used: 4269652743228
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)