ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast41d11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 200 bits (101), Expect = 2e-48 Identities = 193/224 (86%), Gaps = 6/224 (2%) Strand = Plus / Plus Query: 120 gtgacgcgggtggcgcagagggtggtggccccgtcggcgcccacgcccggcggcgagctc 179 |||||||||||||| ||| ||||||||||||| |||||| | ||||| || |||| |||| Sbjct: 23055256 gtgacgcgggtggctcagcgggtggtggccccatcggcggcgacgcctgggggcgcgctc 23055315 Query: 180 ccgctgtcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtc 239 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 23055316 ccgctgtcctggctcgaccgctacccgacgcagcgcgcgctcatcgagtccctccatgtc 23055375 Query: 240 ttcaagggccgcgccgtcgacgaggccgccgagtcccctgtcaaggccatcgagcgcgcc 299 |||||||||||||| ||| ||||||| | | || | | ||| ||||||||||| Sbjct: 23055376 ttcaagggccgcgc------cgacgccgccgtggcgcccgccgcggcgatcgagcgcgcg 23055429 Query: 300 ctggccgctgcgctcgtcagctactaccccatcgccggccggct 343 || || || |||||||| |||||||||||||||||||||||||| Sbjct: 23055430 ctcgcggcggcgctcgtgagctactaccccatcgccggccggct 23055473
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 200 bits (101), Expect = 2e-48 Identities = 193/224 (86%), Gaps = 6/224 (2%) Strand = Plus / Plus Query: 120 gtgacgcgggtggcgcagagggtggtggccccgtcggcgcccacgcccggcggcgagctc 179 |||||||||||||| ||| ||||||||||||| |||||| | ||||| || |||| |||| Sbjct: 121800 gtgacgcgggtggctcagcgggtggtggccccatcggcggcgacgcctgggggcgcgctc 121859 Query: 180 ccgctgtcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtc 239 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 121860 ccgctgtcctggctcgaccgctacccgacgcagcgcgcgctcatcgagtccctccatgtc 121919 Query: 240 ttcaagggccgcgccgtcgacgaggccgccgagtcccctgtcaaggccatcgagcgcgcc 299 |||||||||||||| ||| ||||||| | | || | | ||| ||||||||||| Sbjct: 121920 ttcaagggccgcgc------cgacgccgccgtggcgcccgccgcggcgatcgagcgcgcg 121973 Query: 300 ctggccgctgcgctcgtcagctactaccccatcgccggccggct 343 || || || |||||||| |||||||||||||||||||||||||| Sbjct: 121974 ctcgcggcggcgctcgtgagctactaccccatcgccggccggct 122017
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 200 bits (101), Expect = 2e-48 Identities = 193/224 (86%), Gaps = 6/224 (2%) Strand = Plus / Plus Query: 120 gtgacgcgggtggcgcagagggtggtggccccgtcggcgcccacgcccggcggcgagctc 179 |||||||||||||| ||| ||||||||||||| |||||| | ||||| || |||| |||| Sbjct: 5904 gtgacgcgggtggctcagcgggtggtggccccatcggcggcgacgcctgggggcgcgctc 5963 Query: 180 ccgctgtcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtc 239 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 5964 ccgctgtcctggctcgaccgctacccgacgcagcgcgcgctcatcgagtccctccatgtc 6023 Query: 240 ttcaagggccgcgccgtcgacgaggccgccgagtcccctgtcaaggccatcgagcgcgcc 299 |||||||||||||| ||| ||||||| | | || | | ||| ||||||||||| Sbjct: 6024 ttcaagggccgcgc------cgacgccgccgtggcgcccgccgcggcgatcgagcgcgcg 6077 Query: 300 ctggccgctgcgctcgtcagctactaccccatcgccggccggct 343 || || || |||||||| |||||||||||||||||||||||||| Sbjct: 6078 ctcgcggcggcgctcgtgagctactaccccatcgccggccggct 6121
>dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E04, full insert sequence Length = 1507 Score = 200 bits (101), Expect = 2e-48 Identities = 193/224 (86%), Gaps = 6/224 (2%) Strand = Plus / Plus Query: 120 gtgacgcgggtggcgcagagggtggtggccccgtcggcgcccacgcccggcggcgagctc 179 |||||||||||||| ||| ||||||||||||| |||||| | ||||| || |||| |||| Sbjct: 110 gtgacgcgggtggctcagcgggtggtggccccatcggcggcgacgcctgggggcgcgctc 169 Query: 180 ccgctgtcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtc 239 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 170 ccgctgtcctggctcgaccgctacccgacgcagcgcgcgctcatcgagtccctccatgtc 229 Query: 240 ttcaagggccgcgccgtcgacgaggccgccgagtcccctgtcaaggccatcgagcgcgcc 299 |||||||||||||| ||| ||||||| | | || | | ||| ||||||||||| Sbjct: 230 ttcaagggccgcgc------cgacgccgccgtggcgcccgccgcggcgatcgagcgcgcg 283 Query: 300 ctggccgctgcgctcgtcagctactaccccatcgccggccggct 343 || || || |||||||| |||||||||||||||||||||||||| Sbjct: 284 ctcgcggcggcgctcgtgagctactaccccatcgccggccggct 327
>ref|XM_476061.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1320 Score = 79.8 bits (40), Expect = 5e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 186 tcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtcttcaag 245 ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| Sbjct: 94 tcctggctcgaccgctaccccacccagatggcgctcatcgagtcgctccacgtcttcaag 153
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 79.8 bits (40), Expect = 5e-12 Identities = 55/60 (91%) Strand = Plus / Minus Query: 186 tcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtcttcaag 245 ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| Sbjct: 47153 tcctggctcgaccgctaccccacccagatggcgctcatcgagtcgctccacgtcttcaag 47094
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 79.8 bits (40), Expect = 5e-12 Identities = 55/60 (91%) Strand = Plus / Minus Query: 186 tcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtcttcaag 245 ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| Sbjct: 4679148 tcctggctcgaccgctaccccacccagatggcgctcatcgagtcgctccacgtcttcaag 4679089
>dbj|AK100028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147B02, full insert sequence Length = 1897 Score = 79.8 bits (40), Expect = 5e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 186 tcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtcttcaag 245 ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| Sbjct: 181 tcctggctcgaccgctaccccacccagatggcgctcatcgagtcgctccacgtcttcaag 240
>gb|BT018886.1| Zea mays clone EL01T0205E01.d mRNA sequence Length = 1617 Score = 71.9 bits (36), Expect = 1e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 183 ctgtcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtcttc 242 ||||||||||| ||||||||||| |||||| |||||||||||||| |||||||| ||| Sbjct: 166 ctgtcctggctagaccgctacccgacgcagatggcgctcatcgagtcgctccacgtgttc 225 Query: 243 aagg 246 |||| Sbjct: 226 aagg 229
>ref|NM_189533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1314 Score = 54.0 bits (27), Expect = 3e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 183 ctgtcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtcttc 242 ||||| ||||||||||||||||| || ||| ||||| |||||||| |||||||| ||| Sbjct: 82 ctgtcgtggctcgaccgctaccctacccagatggcgctgatcgagtcgctccacgtgttc 141 Query: 243 aag 245 ||| Sbjct: 142 aag 144
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 54.0 bits (27), Expect = 3e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 183 ctgtcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtcttc 242 ||||| ||||||||||||||||| || ||| ||||| |||||||| |||||||| ||| Sbjct: 4110922 ctgtcgtggctcgaccgctaccctacccagatggcgctgatcgagtcgctccacgtgttc 4110863 Query: 243 aag 245 ||| Sbjct: 4110862 aag 4110860 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 gcgccaccaccacaacccaga 45 ||||||||||||||||||||| Sbjct: 7452580 gcgccaccaccacaacccaga 7452560
>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0509B06 Length = 104515 Score = 54.0 bits (27), Expect = 3e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 183 ctgtcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtcttc 242 ||||| ||||||||||||||||| || ||| ||||| |||||||| |||||||| ||| Sbjct: 77665 ctgtcgtggctcgaccgctaccctacccagatggcgctgatcgagtcgctccacgtgttc 77606 Query: 243 aag 245 ||| Sbjct: 77605 aag 77603
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 54.0 bits (27), Expect = 3e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 183 ctgtcctggctcgaccgctaccccacgcagcgtgcgctcatcgagtccctccacgtcttc 242 ||||| ||||||||||||||||| || ||| ||||| |||||||| |||||||| ||| Sbjct: 57893 ctgtcgtggctcgaccgctaccctacccagatggcgctgatcgagtcgctccacgtgttc 57834 Query: 243 aag 245 ||| Sbjct: 57833 aag 57831
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Minus Query: 247 gccgcgccgtcgacgaggccgccg 270 |||||||||||||||||||||||| Sbjct: 273143 gccgcgccgtcgacgaggccgccg 273120
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Plus Query: 20 cgagtgcgccaccaccacaaccc 42 ||||||||||||||||||||||| Sbjct: 2868753 cgagtgcgccaccaccacaaccc 2868775 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Plus Query: 20 cgagtgcgccaccaccacaaccc 42 ||||||||||||||||||||||| Sbjct: 2858278 cgagtgcgccaccaccacaaccc 2858300 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Plus Query: 20 cgagtgcgccaccaccacaaccc 42 ||||||||||||||||||||||| Sbjct: 2848684 cgagtgcgccaccaccacaaccc 2848706
>dbj|AB045995.1| Macaca fascicularis brain cDNA, clone:QccE-11742 Length = 2355 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Plus Query: 146 ggccccgtcggcgcccacgcccg 168 ||||||||||||||||||||||| Sbjct: 680 ggccccgtcggcgcccacgcccg 702
>ref|XM_474776.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1326 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 320 ctactaccccatcgccggccggctcg 345 ||||||||||||||||||||| |||| Sbjct: 210 ctactaccccatcgccggccgactcg 235
>emb|AJ786317.1| Streptomyces fradiae putative neomycin biosynthetic gene cluster, strain ATCC 10745 Length = 42149 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 ccagcgagtgcgccaccaccac 37 |||||||||||||||||||||| Sbjct: 30490 ccagcgagtgcgccaccaccac 30511
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 320 ctactaccccatcgccggccggctcg 345 ||||||||||||||||||||| |||| Sbjct: 6436850 ctactaccccatcgccggccgactcg 6436875 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 ctactaccccatcgccggccg 340 ||||||||||||||||||||| Sbjct: 5117762 ctactaccccatcgccggccg 5117742
>emb|AL662965.3|OSJN00167 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17, complete sequence Length = 147548 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 320 ctactaccccatcgccggccggctcg 345 ||||||||||||||||||||| |||| Sbjct: 98999 ctactaccccatcgccggccgactcg 99024
>ref|XM_474639.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1296 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 ctactaccccatcgccggccg 340 ||||||||||||||||||||| Sbjct: 207 ctactaccccatcgccggccg 227
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 gccgcgccgtcgacgaggccg 267 ||||||||||||||||||||| Sbjct: 2273486 gccgcgccgtcgacgaggccg 2273506
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tcgccggccggctcgcgctgt 351 ||||||||||||||||||||| Sbjct: 985354 tcgccggccggctcgcgctgt 985334
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 gccgcgccgtcgacgaggccg 267 ||||||||||||||||||||| Sbjct: 3188193 gccgcgccgtcgacgaggccg 3188213 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tcgccggccggctcgcgctgt 351 ||||||||||||||||||||| Sbjct: 827893 tcgccggccggctcgcgctgt 827873
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence Length = 144144 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 ctactaccccatcgccggccg 340 ||||||||||||||||||||| Sbjct: 94035 ctactaccccatcgccggccg 94015
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 cgcccggcggcgagctcccgc 183 ||||||||||||||||||||| Sbjct: 4821571 cgcccggcggcgagctcccgc 4821551
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0702F03 Length = 141111 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 gcgccaccaccacaacccaga 45 ||||||||||||||||||||| Sbjct: 113608 gcgccaccaccacaacccaga 113588
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 gcgccaccaccacaacccaga 45 ||||||||||||||||||||| Sbjct: 1372 gcgccaccaccacaacccaga 1352
>dbj|AK120816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014O08, full insert sequence Length = 1687 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 gcgccaccaccacaacccaga 45 ||||||||||||||||||||| Sbjct: 106 gcgccaccaccacaacccaga 126
>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940123D9, complete sequence Length = 121336 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 cgccgtcgacgaggccgccga 271 ||||||||||||||||||||| Sbjct: 71473 cgccgtcgacgaggccgccga 71453
>ref|NM_195345.1| Oryza sativa (japonica cultivar-group) putative acetyl transferase (OSJNBa0003P07.2), mRNA Length = 1458 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 ctactaccccatcgccggccggct 343 |||||||||| ||||||||||||| Sbjct: 234 ctactaccccgtcgccggccggct 257
>gb|AC093612.18| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0003P07, complete sequence Length = 175116 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 ctactaccccatcgccggccggct 343 |||||||||| ||||||||||||| Sbjct: 10276 ctactaccccgtcgccggccggct 10299
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 252 gccgtcgacgaggccgccgagtcccctg 279 ||||||||||||| ||||||| |||||| Sbjct: 2837620 gccgtcgacgaggacgccgaggcccctg 2837593 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cgccgtcgacgaggccgccg 270 |||||||||||||||||||| Sbjct: 462577 cgccgtcgacgaggccgccg 462596
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 ccgtcgacgaggccgccgag 272 |||||||||||||||||||| Sbjct: 3067379 ccgtcgacgaggccgccgag 3067398
>emb|CR628382.18| Zebrafish DNA sequence from clone DKEY-200C24 in linkage group 19, complete sequence Length = 156223 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ccaccaccacaacccagatc 47 |||||||||||||||||||| Sbjct: 26155 ccaccaccacaacccagatc 26174
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13 Length = 346051 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 252 gccgtcgacgaggccgccgagtcccctg 279 ||||||||||||| ||||||| |||||| Sbjct: 69096 gccgtcgacgaggacgccgaggcccctg 69069
>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13 Length = 342416 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cgccgtcgacgaggccgccg 270 |||||||||||||||||||| Sbjct: 120581 cgccgtcgacgaggccgccg 120600
>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16 Length = 348074 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 ggccatcgagcgcgccctggccgc 307 |||||||| ||||||||||||||| Sbjct: 121532 ggccatcgcgcgcgccctggccgc 121555
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gcgcgccctggccgctgcgc 312 |||||||||||||||||||| Sbjct: 347828 gcgcgccctggccgctgcgc 347809
>gb|AC105377.12| Oryza sativa chromosome 10 BAC OSJNBa0034E15 genomic sequence, complete sequence Length = 100285 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 ctactaccccatcgccggccggct 343 |||||||||| ||||||||||||| Sbjct: 89981 ctactaccccgtcgccggccggct 90004
>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14 Length = 344805 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 ggccatcgagcgcgccctggccgc 307 |||||||| ||||||||||||||| Sbjct: 74154 ggccatcgcgcgcgccctggccgc 74177
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gcgcgccctggccgctgcgc 312 |||||||||||||||||||| Sbjct: 255662 gcgcgccctggccgctgcgc 255643
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 ggccatcgagcgcgccctggccgc 307 |||||||| ||||||||||||||| Sbjct: 340303 ggccatcgcgcgcgccctggccgc 340326
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gcgcgccctggccgctgcgc 312 |||||||||||||||||||| Sbjct: 122938 gcgcgccctggccgctgcgc 122919
>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14 Length = 324050 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cgccgtcgacgaggccgccg 270 |||||||||||||||||||| Sbjct: 120505 cgccgtcgacgaggccgccg 120524
>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14 Length = 306550 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 252 gccgtcgacgaggccgccgagtcccctg 279 ||||||||||||| ||||||| |||||| Sbjct: 297929 gccgtcgacgaggacgccgaggcccctg 297902
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 118 cggtgacgcgggtggcgcagagggtggtggcc 149 |||||| ||||| ||||| ||||||||||||| Sbjct: 164666 cggtgaagcgggaggcgccgagggtggtggcc 164635
>emb|AJ000330.2|PSSTYCATA Pseudomonas sp. Y2 DNA for styrene catabolism genes Length = 29685 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ccatcgagcgcgccctggcc 305 |||||||||||||||||||| Sbjct: 15352 ccatcgagcgcgccctggcc 15371
>ref|XM_683229.1| PREDICTED: Danio rerio similar to protein 4.1R (LOC559842), mRNA Length = 635 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ccaccaccacaacccagatc 47 |||||||||||||||||||| Sbjct: 430 ccaccaccacaacccagatc 449
>gb|U36763.1|MBU36763 Mycobacterium bovis fatty acid synthase gene, complete cds Length = 8391 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 252 gccgtcgacgaggccgccgagtcccctg 279 ||||||||||||| ||||||| |||||| Sbjct: 6840 gccgtcgacgaggacgccgaggcccctg 6867
>gb|AF012100.2|AF012100 Pseudomonas aeruginosa PtxR (ptxR) and PtxS (ptxS) genes, complete cds and ketogluconate utilization operon gene, complete sequence Length = 7447 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gcgggtggcgcagagggtgg 144 |||||||||||||||||||| Sbjct: 2930 gcgggtggcgcagagggtgg 2911
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 ctactaccccatcgccggccggct 343 |||||||||| ||||||||||||| Sbjct: 6292423 ctactaccccgtcgccggccggct 6292446
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 agggccgcgccgtcgacgaggccg 267 ||||||| |||||||||||||||| Sbjct: 6880231 agggccgtgccgtcgacgaggccg 6880254
>gb|AE004651.1| Pseudomonas aeruginosa PAO1, section 212 of 529 of the complete genome Length = 10728 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gcgggtggcgcagagggtgg 144 |||||||||||||||||||| Sbjct: 10423 gcgggtggcgcagagggtgg 10404
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ccgcgccgtcgacgaggccg 267 |||||||||||||||||||| Sbjct: 3745393 ccgcgccgtcgacgaggccg 3745374
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 tcaaggccatcgagcgcgcc 299 |||||||||||||||||||| Sbjct: 4884397 tcaaggccatcgagcgcgcc 4884416
>dbj|AK100207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042A21, full insert sequence Length = 2209 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 ctactaccccatcgccggccggct 343 |||||||||| ||||||||||||| Sbjct: 658 ctactaccccgtcgccggccggct 681
>gb|U25719.1|MBU25719 Mycobacterium bovis fatty acid synthase gene, putative ketoacyl reductase domain, partial cds Length = 300 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 252 gccgtcgacgaggccgccgagtcccctg 279 ||||||||||||| ||||||| |||||| Sbjct: 100 gccgtcgacgaggacgccgaggcccctg 127
>gb|U73653.1|MBU73653 Mycobacterium bovis 63 kDa protein, 47 kDa protein and clpB gene, complete cds Length = 4874 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cgccgtcgacgaggccgccg 270 |||||||||||||||||||| Sbjct: 3896 cgccgtcgacgaggccgccg 3915
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 ggctcgaccgctaccccacgcagc 213 ||||||||| |||||||||||||| Sbjct: 2733183 ggctcgaccactaccccacgcagc 2733160
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 ctactaccccatcgccggccggct 343 |||||||||| ||||||||||||| Sbjct: 6294009 ctactaccccgtcgccggccggct 6294032 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,308,789 Number of Sequences: 3902068 Number of extensions: 2308789 Number of successful extensions: 52843 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 50368 Number of HSP's gapped (non-prelim): 2476 length of query: 352 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 330 effective length of database: 17,147,199,772 effective search space: 5658575924760 effective search space used: 5658575924760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
