ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast41d10 |
|---|---|
| Clone Library Name | barley_pub |
>NSD1_MOUSE (O88491) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) Length = 2588 Score = 35.4 bits (80), Expect = 0.058 Identities = 33/127 (25%), Positives = 48/127 (37%) Frame = +3 Query: 3 PHHPTHPHLSPRTDPMATVAATESRRSGRSRKALAPVPDNDANISXXXXXXXXXXXXQPH 182 P +H L+ R P V + + KAL PV N + Sbjct: 2304 PPEKSHASLTQRLPPPEKVLSAVVQSLVAKEKALRPVDQNTQSKHRPAVVMDLIDLTPRQ 2363 Query: 183 KAKRTSPKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQ 362 K + SP+ EV+P ADE+ + P++ LG P +T K+ + S Sbjct: 2364 KERAASPQ----EVTPQADEKTAMLESSSWPSSKGLGH-----IPRATEKISVSESLQPS 2414 Query: 363 AKDAAPS 383 K AAPS Sbjct: 2415 GKVAAPS 2421
>TOP2A_CHICK (O42130) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1553 Score = 33.9 bits (76), Expect = 0.17 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 21/132 (15%) Frame = +3 Query: 72 SRRSGRSRKALAPVP-----DNDANISXXXXXXXXXXXXQPHKAKRTSPKMRKAEVSPIA 236 S+R R+A A + D+DA+++ + + T+ K + + + Sbjct: 1313 SKRERVVRQAAAKIKPMVNSDSDADLTSSDEDSEYQENSEGNTDSDTTSKKKPPKAKAVP 1372 Query: 237 DERKGTPP----------ALVDPAAVSLGKADVATAPASTRKVKR------ASSKGGQAK 368 E+KG P V A D A P S + + A+ KG AK Sbjct: 1373 KEKKGKAPKEKPLPDAVPVRVQNVAAESASQDPAAPPVSVPRAQAVPKKPAAAKKGSTAK 1432 Query: 369 DAAPSMSDELTE 404 D PS+ D LT+ Sbjct: 1433 DNQPSIMDILTK 1444
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 33.1 bits (74), Expect = 0.29 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Frame = +3 Query: 174 QPHKAKRTSPK-MRKAEVSPIADERKGTP---PALVDPAAVSLGKADVATAPASTRKVKR 341 +P AK +PK A P A + P PA P+A S K A P K Sbjct: 64 KPAAAKPAAPKPAASAAPKPGAPAKPAAPAAKPAPAAPSAASAAKPGAAPKPGVQAKPAA 123 Query: 342 ASSKGGQAKDAAPS 383 A+ G AK AAP+ Sbjct: 124 AAKPGAPAKPAAPA 137 Score = 28.9 bits (63), Expect = 5.4 Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 1/119 (0%) Frame = +3 Query: 30 SPRTDPMATVAATESRRSGRSRKALAPVPDNDANISXXXXXXXXXXXXQPHKAKRTSPKM 209 S ++D A AA + + A AP P A + AK + Sbjct: 56 SDKSDTAAKPAAAKPAAPKPAASA-APKPGAPAKPAAPAAKPAPAAPSAASAAKPGAAPK 114 Query: 210 RKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRK-VKRASSKGGQAKDAAPS 383 + P A + G P PAA S K+ A PA+ K + G AK A P+ Sbjct: 115 PGVQAKPAAAAKPGAPAKPAAPAAPSAAKSGSAPKPAAAAKPAFSGPTPGDAAKKAEPA 173
>ERF2_DEBHA (Q9HGI6) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 701 Score = 32.3 bits (72), Expect = 0.49 Identities = 20/74 (27%), Positives = 36/74 (48%) Frame = +3 Query: 183 KAKRTSPKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQ 362 ++K +P + E +P A E++ TP A A + + + T PA +K +S + Sbjct: 175 ESKEATPAATEKEATPAATEKEATPAATEKEATPAATEKE--TTPAPAKKEATPASVKSE 232 Query: 363 AKDAAPSMSDELTE 404 +K A+ S S T+ Sbjct: 233 SKPASKSTSKVATK 246
>NRFA_PENUR (Q92269) Nitrogen regulatory protein nrfA| Length = 865 Score = 32.0 bits (71), Expect = 0.64 Identities = 21/61 (34%), Positives = 29/61 (47%) Frame = +3 Query: 198 SPKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAKDAA 377 S + K V PIA PP PA V+ G+A V AP R++++A Q D + Sbjct: 761 SNTLGKPGVVPIA----AAPPKSGPPAGVAQGRAGVQVAPRRQRRLEKAPIGSDQDPDDS 816 Query: 378 P 380 P Sbjct: 817 P 817
>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 932 Score = 32.0 bits (71), Expect = 0.64 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = +3 Query: 177 PHKAKRTSPKMRKAEVSPIAD-ERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSK 353 P K + S + + ++S D RK PP V+P VSLGKAD A+ + + ++ Sbjct: 577 PGKVETPSLQKEQPQLSEKTDPSRKVDPPTTVEP--VSLGKADSASPSPRKAESQTSAKT 634 Query: 354 GGQAKDAAPS 383 QA D A S Sbjct: 635 VPQAPDKATS 644
>FKBP4_USTMA (Q4PIN7) FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) Length = 375 Score = 31.6 bits (70), Expect = 0.83 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Frame = +3 Query: 195 TSPKMRKA-EVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQ--- 362 ++ K +KA E +P+AD +K V A KAD + A A++ K +KG + Sbjct: 181 SASKPKKAIEAAPLADSKKRAAEKPVKETAAKKLKADASAASAASTPTKAIETKGEKQTK 240 Query: 363 -AKDAAP 380 AKD P Sbjct: 241 GAKDTKP 247
>CPC1_CRYPA (P87090) Cross-pathway control protein 1| Length = 247 Score = 30.8 bits (68), Expect = 1.4 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 10/101 (9%) Frame = +3 Query: 99 ALAPVPDNDANISXXXXXXXXXXXXQPHKAKRTS----PKMRKAEVSPIADERKG--TPP 260 A APVP A S +P +A+++S P R + VS ++ R+G PP Sbjct: 120 APAPVPAAQAEDSPSVDSEDFEPARRPSQARKSSASSSPSGRHSSVSGVSARRRGKPLPP 179 Query: 261 ALVDPAAVSLG----KADVATAPASTRKVKRASSKGGQAKD 371 +D + ++G K +A + RK +R Q ++ Sbjct: 180 ITIDDPSDTVGMKRAKNTLAARKSRARKAERMDELERQVRE 220
>SLI15_YEAST (P38283) Inner centromere protein-related protein SLI15| (INCENP-related protein SLI15) Length = 698 Score = 30.8 bits (68), Expect = 1.4 Identities = 25/91 (27%), Positives = 40/91 (43%) Frame = +3 Query: 78 RSGRSRKALAPVPDNDANISXXXXXXXXXXXXQPHKAKRTSPKMRKAEVSPIADERKGTP 257 RS R P+P+ D I P K+ + PK+R + SPIA ++K T Sbjct: 228 RSQRRSNMFVPLPNKDPLI---------IQHIPPTKSSGSIPKVRTVKESPIAFKKKST- 277 Query: 258 PALVDPAAVSLGKADVATAPASTRKVKRASS 350 + PA ++ +D A + ++ R SS Sbjct: 278 --INSPAIRAVENSDTAGSTKASSVFDRLSS 306
>ENL_HUMAN (Q03111) Protein ENL| Length = 559 Score = 30.8 bits (68), Expect = 1.4 Identities = 32/124 (25%), Positives = 44/124 (35%), Gaps = 3/124 (2%) Frame = +3 Query: 3 PHHPTHPHLS-PRTDPMATVAATESRRSGRSRKALAPVPDNDANISXXXXXXXXXXXXQP 179 PH T H PR D +ES+ S + + D + P Sbjct: 194 PHKVTKEHRERPRKD-------SESKSSSKELEREQAKSSKDTSRKLGEGRLPKEEKAPP 246 Query: 180 HKAKRTSPKMRKAEVS-PIADERKGTPPALVDPAAVSLGKADVATAPA-STRKVKRASSK 353 KA PKM E G PP P S + A +P S +K K++SSK Sbjct: 247 PKAAFKEPKMALKETKLESTSPNPGPPPPPPPPPRASSKRPATADSPKPSAKKQKKSSSK 306 Query: 354 GGQA 365 G ++ Sbjct: 307 GSRS 310
>NHK1_DROME (Q7KRY6) Nucleosomal histone kinase 1 (EC 2.7.11.1) (Protein| baellchen) Length = 599 Score = 30.8 bits (68), Expect = 1.4 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Frame = +3 Query: 3 PHHPTHPHLSPRTDPMATVAATESRRSGRSRKALAPVPDNDANISXXXXXXXXXXXXQPH 182 P ++ +LSP P + AAT + +++K +PV ++ + + H Sbjct: 349 PQTSSNNNLSP---PGTSKAAT----ARKAKKIDSPVLNSSLDEKISASEDDEEEEEKSH 401 Query: 183 K---AKRTSPKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPAST---RKVKRA 344 + AK+ +P R A+VSP+ +PP+ + V T P ST R +A Sbjct: 402 RKKTAKKVTPSARNAKVSPLKRVADSSPPS----------QKRVKTEPKSTPRERATPKA 451 Query: 345 SSKGGQAKDAAP 380 S K A+P Sbjct: 452 SPKPRSTPKASP 463
>GA2L3_HUMAN (Q86XJ1) GAS2-like protein 3 (Growth arrest-specific 2-like 3)| Length = 694 Score = 30.0 bits (66), Expect = 2.4 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 8/60 (13%) Frame = +3 Query: 228 PIADERKGTPPALVDPAAVSLG--------KADVATAPASTRKVKRASSKGGQAKDAAPS 383 P + E++G PP + PA+ G ++ + +PA++ K SSKG K APS Sbjct: 340 PKSKEKQGRPPGALVPASSLKGGNLGSMSVRSKLPNSPAASSHPKLKSSKGITKKPQAPS 399
>HAS1_YARLI (Q6C7D2) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 605 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +3 Query: 279 AVSLGKADVATAPASTRKVKRASSKGGQAKDAAPSMSDELTELQGMLER 425 +V GKAD S+K ++KD + DE E++G+LE+ Sbjct: 15 SVVKGKADKKAKVEKPSSKPAKSAKPSKSKDEVDELDDEFDEVEGLLEK 63
>RL22_DROME (P50887) 60S ribosomal protein L22| Length = 299 Score = 29.6 bits (65), Expect = 3.2 Identities = 29/113 (25%), Positives = 40/113 (35%) Frame = +3 Query: 45 PMATVAATESRRSGRSRKALAPVPDNDANISXXXXXXXXXXXXQPHKAKRTSPKMRKAEV 224 P A A + + +KA D A + +P A + + K A Sbjct: 38 PKAEAAKPAAAAAKNVKKASEAAKDVKAAAAAAKPAAAKPAAAKPAAASKDAGKKAPAAA 97 Query: 225 SPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAKDAAPS 383 +P D + PA PA KA A AST + K AK AAP+ Sbjct: 98 APKKDAKAAAAPA---PA-----KAAPAKKAASTPAAAPPAKKAAPAKAAAPA 142
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 29.6 bits (65), Expect = 3.2 Identities = 24/103 (23%), Positives = 40/103 (38%) Frame = +3 Query: 66 TESRRSGRSRKALAPVPDNDANISXXXXXXXXXXXXQPHKAKRTSPKMRKAEVSPIADER 245 T RR+ SR + P P ++A + P + + A P+ + Sbjct: 784 TPPRRT--SRAPIEPTPASEATGAPTPPPAPPSPSAPPPVVPKEEKEEETAAAPPVEEGE 841 Query: 246 KGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAKDA 374 + PPA + AV GKA+ T + + +KG A+ A Sbjct: 842 EQKPPA-AEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEAA 883
>NOP14_CANGA (Q6FNV1) Probable nucleolar complex protein 14| Length = 799 Score = 29.3 bits (64), Expect = 4.1 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 12/94 (12%) Frame = +3 Query: 180 HKAK-RTSPKMRKA----EVSPIADERKGTPPALVDPAAVSLGKADV-------ATAPAS 323 H+ K RT K+R EV ++RKG P L++ V++GK + A A Sbjct: 39 HEEKARTIAKIRDRFNPFEVKTTKNKRKGGDPGLLNSDRVAVGKPGISKQIGEEARRRAF 98 Query: 324 TRKVKRASSKGGQAKDAAPSMSDELTELQGMLER 425 K KGG LTE + MLER Sbjct: 99 EAKKLMKKRKGGVIDKRFGERDKTLTEEEKMLER 132
>YJY2_YEAST (P47087) Hypothetical 23.2 kDa protein in SPC1-ILV3 intergenic| region Length = 207 Score = 29.3 bits (64), Expect = 4.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 224 VPDSRREEGNASRPGRPGRRLPWEGRCRH 310 VP+ +EG AS P R PWEG+ +H Sbjct: 103 VPNVTLDEGLASTPSLRPRPRPWEGQLQH 131
>SUDX_DROME (Q9Y0H4) E3 ubiquitin-protein ligase suppressor of deltex (EC| 6.3.2.-) Length = 949 Score = 29.3 bits (64), Expect = 4.1 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%) Frame = +3 Query: 207 MRKAEVSPIADERKGTPPA-LVDPAAVS---LGKADVATAPASTRKVKRAS---SKGGQA 365 M K ++ P+A ++ G PP V+P+ VS G++ + R R+S S GG+ Sbjct: 179 MSKLQIQPVAGQQNGNPPVQAVNPSVVSDAAAGRSCMIYGGVRARMRLRSSSGNSNGGET 238 Query: 366 KDAAPS 383 + P+ Sbjct: 239 RSPLPN 244
>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 831 Score = 29.3 bits (64), Expect = 4.1 Identities = 23/75 (30%), Positives = 33/75 (44%) Frame = +3 Query: 180 HKAKRTSPKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGG 359 HKAK + RK E SP K P L P+ +S ++ P S + S K Sbjct: 694 HKAKWSPTPNRKPEPSP-----KLAQPPLRPPSPMSSSPTPPSSTPPSPQPKASGSPKTV 748 Query: 360 QAKDAAPSMSDELTE 404 QA D+ ++ LT+ Sbjct: 749 QAGDSPSAVRSILTK 763
>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 480 Score = 29.3 bits (64), Expect = 4.1 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 13/73 (17%) Frame = +3 Query: 198 SPKMRKAEVSPIADERKGTPPALVDP-AAVSLGKAD------------VATAPASTRKVK 338 +P+ +A +P AD+ KG P L+ P AA+ KAD AP + + Sbjct: 78 APQPPQARGAPAADDDKGPQPLLLPPSAALDGAKADALGAKGEPGGGPAELAPVGPDEKE 137 Query: 339 RASSKGGQAKDAA 377 + + GG+ K A Sbjct: 138 KGAGAGGEEKKGA 150
>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor| Length = 1019 Score = 29.3 bits (64), Expect = 4.1 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +2 Query: 221 GVPDSRREEGNASRPGRPGRRLP 289 G P R ++G PGRPGRR P Sbjct: 361 GSPGERGDQGGKGDPGRPGRRGP 383
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 4.1 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 221 GVPDSRREEGNASRPGRPGRRLP 289 G P ++G A +PGRPG+R P Sbjct: 213 GPPGKNGDDGEAGKPGRPGQRGP 235
>HSLU_VIBPA (Q87T21) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 443 Score = 28.9 bits (63), Expect = 5.4 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 17/73 (23%) Frame = +3 Query: 261 ALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAKD-----------------AAPSMS 389 AL+ PA S G+ + ++TR++ R + GQ D A P M Sbjct: 134 ALLPPARDSWGQVEQKEDTSNTRQIFRKKLREGQLDDKEIEIDVAAPQMGVEIMAPPGME 193 Query: 390 DELTELQGMLERL 428 + +LQGM + L Sbjct: 194 EMTNQLQGMFQNL 206
>H1_ONCMY (P06350) Histone H1 [Contains: Oncorhyncin II]| Length = 206 Score = 28.9 bits (63), Expect = 5.4 Identities = 25/97 (25%), Positives = 35/97 (36%) Frame = +3 Query: 90 SRKALAPVPDNDANISXXXXXXXXXXXXQPHKAKRTSPKMRKAEVSPIADERKGTPPALV 269 ++KA AP A + A + SPK K +P + +P + Sbjct: 109 AKKAAAPKAKKVAAKKPAAAKKPKKVAAKKAVAAKKSPKKAKKPATP--KKAAKSPKKVK 166 Query: 270 DPAAVSLGKADVATAPASTRKVKRASSKGGQAKDAAP 380 PAA + A K K A K +AK AAP Sbjct: 167 KPAAAAKKAAKSPKKATKAAKPKAAKPKAAKAKKAAP 203
>RNH2_RHOPA (Q6NAZ6) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 304 Score = 28.9 bits (63), Expect = 5.4 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = +3 Query: 183 KAKRTSPKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATA-PASTRKVK 338 KAK PK K + AD + + A AAVS A A A PAS + +K Sbjct: 22 KAKTVKPKTVKPKAVKAADGKAASAKASTSKAAVSKTSAKAAAAKPASAKGLK 74
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.9 bits (63), Expect = 5.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 221 GVPDSRREEGNASRPGRPGRRLP 289 G P ++G A +PGRPG R P Sbjct: 213 GPPGKNGDDGEAGKPGRPGERGP 235
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.9 bits (63), Expect = 5.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 221 GVPDSRREEGNASRPGRPGRRLP 289 G P ++G A +PGRPG R P Sbjct: 213 GPPGKNGDDGEAGKPGRPGERGP 235
>BASP_HUMAN (P80723) Brain acid soluble protein 1 (BASP1 protein) (Neuronal| axonal membrane protein NAP-22) (22 kDa neuronal tissue-enriched acidic protein) Length = 226 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/74 (25%), Positives = 24/74 (32%) Frame = +3 Query: 183 KAKRTSPKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQ 362 KAK K A ++ P A +PA GK + K Sbjct: 17 KAKEKDKKAEGAATEEEGTPKESEPQAAAEPAEAKEGKEKPDQDAEGKAEEKEGEKDAAA 76 Query: 363 AKDAAPSMSDELTE 404 AK+ AP E TE Sbjct: 77 AKEEAPKAEPEKTE 90
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 28.9 bits (63), Expect = 5.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 221 GVPDSRREEGNASRPGRPGRRLP 289 G P ++G A +PGRPG R P Sbjct: 224 GPPGKNGDDGEAGKPGRPGERGP 246
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 28.9 bits (63), Expect = 5.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 221 GVPDSRREEGNASRPGRPGRRLP 289 G P ++G A +PGRPG R P Sbjct: 220 GPPGKNGDDGEAGKPGRPGERGP 242
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 28.9 bits (63), Expect = 5.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 221 GVPDSRREEGNASRPGRPGRRLP 289 G P ++G A +PGRPG R P Sbjct: 62 GPPGKNGDDGEAGKPGRPGERGP 84
>SLUG_MOUSE (P97469) Zinc finger protein SLUG (Neural crest transcription| factor Slug) (Snail homolog 2) Length = 269 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +3 Query: 177 PHKAKRTSPKMRKAEVSPIADERKGTPPALVDPAAVSLGK 296 P + TS K SPI+DE + P L DP A+ K Sbjct: 89 PPPSSDTSSKDHSGSESPISDEEERLQPKLSDPHAIEAEK 128
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.5 bits (62), Expect = 7.1 Identities = 27/129 (20%), Positives = 49/129 (37%) Frame = +3 Query: 9 HPTHPHLSPRTDPMATVAATESRRSGRSRKALAPVPDNDANISXXXXXXXXXXXXQPHKA 188 H P SP P + +S R+ +SR +++P + ++ Sbjct: 396 HRPSPPASPPPKPRRSPTPQQSNRARKSRGSVSP----------GRASAPKHKSTEKRES 445 Query: 189 KRTSPKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAK 368 +PK RKAE+S ++E KG GK A + R+ +R + + Sbjct: 446 PSPAPKPRKAELSE-SEEDKG-------------GKMAAADSVQQRRQYRRQNQQSSSDS 491 Query: 369 DAAPSMSDE 395 ++ S +E Sbjct: 492 GSSSSSEEE 500
>JIP3_DROME (Q9GQF1) JNK-interacting protein 3 (Protein sunday driver)| Length = 1227 Score = 28.5 bits (62), Expect = 7.1 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = +3 Query: 234 ADERKGTPPALVDPAAVSLGKADVATAPASTRKV---KRASSKGGQAKDAAP-SMSDELT 401 A ER A ++P A S G A + + S G Q+ D+ P S+ +EL Sbjct: 209 ASERMDVSRARLNPVARSSGPVSYGFASLENSVMLDTETICSVGSQSDDSGPPSLQNELD 268 Query: 402 ELQGMLER 425 L G LER Sbjct: 269 NLSGTLER 276
>VP53_BPAPS (Q9T1P5) Putative protein p53| Length = 307 Score = 28.5 bits (62), Expect = 7.1 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Frame = +3 Query: 174 QPHKAKRTSPKMRKAEVSPIADERKGTPPALVDPAAV--SLGKADVATAP-ASTRKVKRA 344 +P +A + P + + P+A P +++PA V + KAD AP + +K K A Sbjct: 47 EPTEANKPKPFAQDVKPQPVAPSVIVEPKVVIEPAPVVEAHTKADDKPAPVVAEKKGKVA 106 Query: 345 SSKGGQAKDAAPSMSD 392 ++ AK P + D Sbjct: 107 KAETKPAKAVKPMVED 122
>SELPL_HUMAN (Q14242) P-selectin glycoprotein ligand 1 precursor (PSGL-1)| (Selectin P ligand) (CD162 antigen) Length = 412 Score = 28.5 bits (62), Expect = 7.1 Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 8/144 (5%) Frame = +3 Query: 15 THPHLSPRTDPMATVAATESRRS-----GRSRKALAPVPDNDANISXXXXXXXXXXXXQP 179 T P P T P +T +RRS G + L N N+S QP Sbjct: 69 TTPLTGPGT-PESTTVEPAARRSTGLDAGGAVTELTTELANMGNLSTDSAAMEIQTT-QP 126 Query: 180 H--KAKRTSPKMRKAEVSPIA-DERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASS 350 +A+ T P +A+ +P+A E + T + L + T P + + + Sbjct: 127 AATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQP 186 Query: 351 KGGQAKDAAPSMSDELTELQGMLE 422 G +A+ AP+ + T +E Sbjct: 187 TGLEAQTTAPAAMEAQTTAPAAME 210
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/29 (48%), Positives = 14/29 (48%) Frame = +2 Query: 200 AQDAQGGGVPDSRREEGNASRPGRPGRRL 286 A AQ G SR G RP RP RRL Sbjct: 55 AASAQSAGASQSRVASGGCVRPARPERRL 83
>SP96_DICDI (P14328) Spore coat protein SP96| Length = 600 Score = 28.5 bits (62), Expect = 7.1 Identities = 23/115 (20%), Positives = 39/115 (33%) Frame = +3 Query: 39 TDPMATVAATESRRSGRSRKALAPVPDNDANISXXXXXXXXXXXXQPHKAKRTSPKMRKA 218 +D A + +ES SG S +S A +SP A Sbjct: 427 SDSSALGSTSESSASGSSA------------VSSSASGSSAASSSPSSSAASSSPSSSAA 474 Query: 219 EVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAKDAAPS 383 SP + +P + ++ A ++AP+S+ A S + A+ S Sbjct: 475 SSSPSSSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSASSS 529
>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit| (Voltage-gated calcium channel alpha subunit Cav3.1) (Cav3.1c) (NBR13) Length = 2377 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = +3 Query: 201 PKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAKD 371 P++RK+ + P+ TP +L + LG+ A PAS R S++ G A + Sbjct: 1029 PELRKSLLPPLIIHTAATPMSLPKSTSTGLGE---ALGPASRRTSSSGSAEPGAAHE 1082
>SLUG_RAT (O08954) Zinc finger protein SLUG (Neural crest transcription| factor Slug) (Snail homolog 2) Length = 268 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +3 Query: 177 PHKAKRTSPKMRKAEVSPIADERKGTPPALVDPAAVSLGK 296 P + TS K SPI+DE + P L DP A+ K Sbjct: 88 PLPSSDTSSKDHSGSESPISDEEERLQPKLSDPHAIEAEK 127
>TIM50_CAEEL (Q22647) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 452 Score = 28.5 bits (62), Expect = 7.1 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Frame = +3 Query: 198 SPKMRKAEV-SPIADERK---GTPPALVDPAAVSLGKADVATAPASTRKVKRASSK---- 353 +PK+ K EV SP + K PPA PA S ++ + S K++ A+SK Sbjct: 83 APKVEKLEVESPKIEAEKVLSSPPPA---PAPTSSAIDELNSLKDSLEKLESAASKSSSS 139 Query: 354 -GGQAKDAAPSMSDELTELQGMLER 425 GG + ++ P ++E+ + +ER Sbjct: 140 SGGSSDNSDPGNAEEIEARRKRMER 164
>INVO_LEMCA (P14590) Involucrin| Length = 450 Score = 28.5 bits (62), Expect = 7.1 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = +3 Query: 249 GTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAKDAAPSMSDELTE 404 GT P AA + G ATAPA+ + ++A S Q + ++L E Sbjct: 320 GTAPGKAAAAAGATGAGTAATAPATAEERQKAESLEQQLEQEKAQREEQLKE 371
>CY1_PARDE (P13627) Cytochrome c1 precursor| Length = 450 Score = 28.5 bits (62), Expect = 7.1 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 7/76 (9%) Frame = +3 Query: 216 AEVSPIADERKGTP-------PALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAKDA 374 AE P A+E + T PA +PAA + A APA + A ++ A + Sbjct: 102 AEAEPAAEEAQATTEEAPAEEPAAEEPAAEEPAEEPAADAPAEEAAAEEAPAEPEAAAEE 161 Query: 375 APSMSDELTELQGMLE 422 + E TE + E Sbjct: 162 PAAEEPEATEEEAPAE 177
>TSYL3_HUMAN (Q9H489) Testis-specific Y-encoded-like protein 3 (TSPY-like 3)| Length = 355 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +3 Query: 231 IADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAKDAAP 380 +AD+R GTP A P + D T PA+ + + A +G A P Sbjct: 1 MADKRAGTPEAAARPPPGLAREGDARTVPAA--RAREAGGRGSLHPAAGP 48
>AMOT_HUMAN (Q4VCS5) Angiomotin| Length = 1084 Score = 28.1 bits (61), Expect = 9.2 Identities = 28/127 (22%), Positives = 46/127 (36%) Frame = +3 Query: 3 PHHPTHPHLSPRTDPMATVAATESRRSGRSRKALAPVPDNDANISXXXXXXXXXXXXQPH 182 P P+ P LS + + +T++ R S K A P ++ Sbjct: 843 PVPPSTPLLSAHSKTGSRDCSTQTERGTESNKTAAVAP---ISVPAPVAAAATAAAITAT 899 Query: 183 KAKRTSPKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQ 362 A T+ + A P+A P A P+ + A +PA+ ++ A+S Sbjct: 900 AATITTTMVAAA---PVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASA 956 Query: 363 AKDAAPS 383 A APS Sbjct: 957 AA-VAPS 962
>PANC_MYCTU (P0A5R0) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate| synthetase) (Pantoate-activating enzyme) Length = 309 Score = 28.1 bits (61), Expect = 9.2 Identities = 21/70 (30%), Positives = 34/70 (48%) Frame = +3 Query: 201 PKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAKDAAP 380 P +R+A+ ++ + PA AAV+L A A A A+T + A DAAP Sbjct: 185 PTVREADGLAMSSRNRYLDPAQ-RAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAP 243 Query: 381 SMSDELTELQ 410 ++ + EL+ Sbjct: 244 GVAVDYLELR 253
>PANC_MYCBO (P0A5R1) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate| synthetase) (Pantoate-activating enzyme) Length = 309 Score = 28.1 bits (61), Expect = 9.2 Identities = 21/70 (30%), Positives = 34/70 (48%) Frame = +3 Query: 201 PKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAKDAAP 380 P +R+A+ ++ + PA AAV+L A A A A+T + A DAAP Sbjct: 185 PTVREADGLAMSSRNRYLDPAQ-RAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAP 243 Query: 381 SMSDELTELQ 410 ++ + EL+ Sbjct: 244 GVAVDYLELR 253
>H11L_CHICK (P08287) Histone H1.11L| Length = 224 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +3 Query: 252 TPPALVDPAAVSLGKADVATAPASTRKVKRASSKGGQAKDAAPSMSDELTE 404 T PA PAA + A A A A+ +K K+A+ K A PS+++ +T+ Sbjct: 3 TAPA---PAAEAAPAAAPAPAKAAAKKPKKAAGGAKARKPAGPSVTELITK 50
>DMD_CAEEL (Q9TW65) Dystrophin-1| Length = 3674 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/83 (22%), Positives = 32/83 (38%) Frame = +3 Query: 180 HKAKRTSPKMRKAEVSPIADERKGTPPALVDPAAVSLGKADVATAPASTRKVKRASSKGG 359 HK + P + I + TPP A + GK+ +A R K +SS Sbjct: 260 HKMLSSQPSTSSSSALQIPPQ---TPPTAHHQAMLDRGKSFEQSAEGEVRSRKSSSSSQK 316 Query: 360 QAKDAAPSMSDELTELQGMLERL 428 K ++L E + +E++ Sbjct: 317 SGKSKKARREEQLAEFKSCIEQV 339 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,130,097 Number of Sequences: 219361 Number of extensions: 427243 Number of successful extensions: 2853 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 2348 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2834 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
