ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast41d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192398.1| Oryza sativa (japonica cultivar-group), predic... 121 2e-24
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
3dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
4dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
5dbj|AK104312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
6dbj|AK103547.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
7dbj|AK061145.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
8gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chr... 46 0.085
9ref|XM_568605.1| Cryptococcus neoformans var. neoformans JEC21 d... 46 0.085
10emb|AL833789.20| Zebrafish DNA sequence from clone DKEY-69O7 in ... 44 0.34
11emb|AL590396.13| Human DNA sequence from clone RP11-193H5 on chr... 42 1.3
12emb|BX936313.8| Zebrafish DNA sequence from clone CH211-106J16 i... 42 1.3
13emb|CR293518.13| Zebrafish DNA sequence from clone CH211-129L10 ... 42 1.3
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
15gb|AE014133.1| Streptococcus mutans UA159, complete genome 42 1.3
16dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
17dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complet... 42 1.3
18emb|AL606925.16| Mouse DNA sequence from clone RP23-12J1 on chro... 42 1.3
19dbj|AP003116.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.3
20ref|NM_148136.1| Arabidopsis thaliana unknown protein AT5G55893 ... 40 5.3
21gb|AC098644.4| Takifugu rubripes clone 205P11, complete sequence 40 5.3
22ref|XM_521058.1| PREDICTED: Pan troglodytes similar to L-type ca... 40 5.3
23ref|NM_001794.2| Homo sapiens cadherin 4, type 1, R-cadherin (re... 40 5.3
24gb|BC101651.1| Homo sapiens cadherin 4, type 1, R-cadherin (reti... 40 5.3
25gb|AF235097.2| Homo sapiens chromosome X multiple clones map p11... 40 5.3
26gb|AC134611.4| Mus musculus BAC clone RP23-98D8 from chromosome ... 40 5.3
27ref|NM_005183.2| Homo sapiens calcium channel, voltage-dependent... 40 5.3
28gb|AC149133.1| Pan troglodytes chromosome X clone RP43-010O16 ma... 40 5.3
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.3
30ref|XM_538035.2| PREDICTED: Canis familiaris similar to calcium ... 40 5.3
31gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genom... 40 5.3
32gb|AC119395.2| Mus musculus chromosome 8 clone MGS1-178N23 map A... 40 5.3
33gb|AC129592.5| Mus musculus BAC clone RP24-86A6 from chromosome ... 40 5.3
34ref|XM_546847.2| PREDICTED: Canis familiaris similar to polycyst... 40 5.3
35gb|AC158393.2| Mus musculus BAC clone RP23-368G21 from chromosom... 40 5.3
36gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.3
37gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.3
38emb|AL353696.8| Human DNA sequence from clone RP11-560G8 on chro... 40 5.3
39emb|AL136379.19| Human DNA sequence from clone RP5-881P19 on chr... 40 5.3
40emb|BX548246.17| Zebrafish DNA sequence from clone CH211-274P15 ... 40 5.3
41emb|AL109850.1|SPCC830 S.pombe chromosome III cosmid c830 40 5.3
42emb|AJ224874.1|HSAJ4874 Homo sapiens mRNA for L-type calcium cha... 40 5.3
43emb|AJ006216.1|HSA6216 Homo sapiens CACNA1F gene, exons 1 to 48 40 5.3
44gb|AC113169.2| Homo sapiens chromosome 3 clone RP11-322K13, comp... 40 5.3
45gb|DQ397860.1| Cenarchaeum symbiosum clone C07E09, complete sequ... 40 5.3
46dbj|AK124724.1| Homo sapiens cDNA FLJ42734 fis, clone BRAWH20144... 40 5.3
47dbj|AK091496.1| Homo sapiens cDNA FLJ34177 fis, clone FCBBF30164... 40 5.3
48gb|AC112213.2| Homo sapiens chromosome 3 clone RP11-223D18, comp... 40 5.3
49gb|AF314839.1| Orchis quadripunctata nad1 gene, intron 2; mitoch... 40 5.3
50gb|AF314837.1| Disperis lindleyana nad1 gene, intron 2; mitochon... 40 5.3
51gb|S75228.1| btn=homeodomain gene buttonless [Drosophila, shibir... 40 5.3
52ref|NM_001023463.1| Schizosaccharomyces pombe 972h- hypothetical... 40 5.3
53gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
54dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
55gb|AC004916.2|AC004916 Homo sapiens PAC clone RP5-891L14 from 7p... 40 5.3
56gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.3
57gb|AF201304.1|AF201304 Homo sapiens voltage-gated L-type calcium... 40 5.3
58dbj|AB162437.1| Schizosaccharomyces pombe snf22 gene for SNF2-fa... 40 5.3
59dbj|AB018120.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.3
60gb|BC112150.1| Homo sapiens cadherin 4, type 1, R-cadherin (reti... 40 5.3
61emb|BX004834.13| Zebrafish DNA sequence from clone CH211-42E22 i... 40 5.3
62gb|AF067227.1|AF067227 Homo sapiens voltage-gated L-type calcium... 40 5.3
63gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.3
64gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.3
65gb|AC136147.4| Mus musculus BAC clone RP23-18B3 from 8, complete... 40 5.3
66gb|AC132407.3| Mus musculus BAC clone RP23-343G12 from 8, comple... 40 5.3
67gb|L34059.1|HUMCA4A Homo sapiens cadherin-4 mRNA, complete cds 40 5.3 
>ref|NM_192398.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1215

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/101 (90%)
 Strand = Plus / Plus

                                                                       
Query: 255 atgaagctccatttcttggtgaaggtcctgttcgggcctgtgccggtctacttctcggcg 314
           ||||||||||| ||| || | | | |||||||||| || |||||||| ||||||||||||
Sbjct: 1   atgaagctccacttcgtgctcaggttcctgttcggccccgtgccggtgtacttctcggcg 60

                                                    
Query: 315 ctggccatcctcatcctgctgaccaacgcgcagtacttcgg 355
           ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 61  ctggccatcctcatcctgctgacgaacgcgcagtacttcgg 101
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/101 (90%)
 Strand = Plus / Minus

                                                                            
Query: 255      atgaagctccatttcttggtgaaggtcctgttcgggcctgtgccggtctacttctcggcg 314
                ||||||||||| ||| || | | | |||||||||| || |||||||| ||||||||||||
Sbjct: 26396486 atgaagctccacttcgtgctcaggttcctgttcggccccgtgccggtgtacttctcggcg 26396427

                                                         
Query: 315      ctggccatcctcatcctgctgaccaacgcgcagtacttcgg 355
                ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 26396426 ctggccatcctcatcctgctgacgaacgcgcagtacttcgg 26396386
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>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032K15
          Length = 126195

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/101 (90%)
 Strand = Plus / Minus

                                                                         
Query: 255   atgaagctccatttcttggtgaaggtcctgttcgggcctgtgccggtctacttctcggcg 314
             ||||||||||| ||| || | | | |||||||||| || |||||||| ||||||||||||
Sbjct: 70351 atgaagctccacttcgtgctcaggttcctgttcggccccgtgccggtgtacttctcggcg 70292

                                                      
Query: 315   ctggccatcctcatcctgctgaccaacgcgcagtacttcgg 355
             ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 70291 ctggccatcctcatcctgctgacgaacgcgcagtacttcgg 70251
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>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OSJNBb0006H05
          Length = 154821

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/101 (90%)
 Strand = Plus / Minus

                                                                        
Query: 255  atgaagctccatttcttggtgaaggtcctgttcgggcctgtgccggtctacttctcggcg 314
            ||||||||||| ||| || | | | |||||||||| || |||||||| ||||||||||||
Sbjct: 5105 atgaagctccacttcgtgctcaggttcctgttcggccccgtgccggtgtacttctcggcg 5046

                                                     
Query: 315  ctggccatcctcatcctgctgaccaacgcgcagtacttcgg 355
            ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5045 ctggccatcctcatcctgctgacgaacgcgcagtacttcgg 5005
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>dbj|AK104312.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G10, full
           insert sequence
          Length = 1686

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/101 (90%)
 Strand = Plus / Plus

                                                                       
Query: 255 atgaagctccatttcttggtgaaggtcctgttcgggcctgtgccggtctacttctcggcg 314
           ||||||||||| ||| || | | | |||||||||| || |||||||| ||||||||||||
Sbjct: 248 atgaagctccacttcgtgctcaggttcctgttcggccccgtgccggtgtacttctcggcg 307

                                                    
Query: 315 ctggccatcctcatcctgctgaccaacgcgcagtacttcgg 355
           ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 308 ctggccatcctcatcctgctgacgaacgcgcagtacttcgg 348
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>dbj|AK103547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132E17, full
           insert sequence
          Length = 1574

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/101 (90%)
 Strand = Plus / Plus

                                                                       
Query: 255 atgaagctccatttcttggtgaaggtcctgttcgggcctgtgccggtctacttctcggcg 314
           ||||||||||| ||| || | | | |||||||||| || |||||||| ||||||||||||
Sbjct: 249 atgaagctccacttcgtgctcaggttcctgttcggccccgtgccggtgtacttctcggcg 308

                                                    
Query: 315 ctggccatcctcatcctgctgaccaacgcgcagtacttcgg 355
           ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 309 ctggccatcctcatcctgctgacgaacgcgcagtacttcgg 349
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>dbj|AK061145.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D04, full
           insert sequence
          Length = 1741

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/101 (90%)
 Strand = Plus / Plus

                                                                       
Query: 255 atgaagctccatttcttggtgaaggtcctgttcgggcctgtgccggtctacttctcggcg 314
           ||||||||||| ||| || | | | |||||||||| || |||||||| ||||||||||||
Sbjct: 250 atgaagctccacttcgtgctcaggttcctgttcggccccgtgccggtgtacttctcggcg 309

                                                    
Query: 315 ctggccatcctcatcctgctgaccaacgcgcagtacttcgg 355
           ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 310 ctggccatcctcatcctgctgacgaacgcgcagtacttcgg 350
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>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete
              sequence
          Length = 762694

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 41     atcgatccatccatcatccccttcctc 67
              |||||||||||||||||| ||||||||
Sbjct: 417229 atcgatccatccatcatcgccttcctc 417255
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>ref|XM_568605.1| Cryptococcus neoformans var. neoformans JEC21 dipeptidyl-peptidase
            and tripeptidyl-peptidase (CNN01410) partial mRNA
          Length = 2714

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 41   atcgatccatccatcatccccttcctc 67
            |||||||||||||||||| ||||||||
Sbjct: 1374 atcgatccatccatcatcgccttcctc 1348
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>emb|AL833789.20| Zebrafish DNA sequence from clone DKEY-69O7 in linkage group 12, complete
              sequence
          Length = 175664

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 30     aaaaaagagccatcgatccatccatc 55
              |||||||||||||| |||||||||||
Sbjct: 126881 aaaaaagagccatccatccatccatc 126856
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>emb|AL590396.13| Human DNA sequence from clone RP11-193H5 on chromosome 1 Contains the
             3' end of a novel gene (LOC401987), a actin pseudogene, a
             cytochrome b (MTCYB) pseudogene, a NADH dehydrogenase 6
             (MTND6) pseudogene and a NADH dehydrogenase 5 (MTND5)
             pseudogene, complete sequence
          Length = 122108

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    tccatccatcatccccttcct 66
             |||||||||||||||||||||
Sbjct: 33480 tccatccatcatccccttcct 33500
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>emb|BX936313.8| Zebrafish DNA sequence from clone CH211-106J16 in linkage group 3,
             complete sequence
          Length = 78174

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    ccatcgatccatccatcatcc 59
             |||||||||||||||||||||
Sbjct: 20103 ccatcgatccatccatcatcc 20083
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>emb|CR293518.13| Zebrafish DNA sequence from clone CH211-129L10 in linkage group 12,
              complete sequence
          Length = 196374

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     ccatcgatccatccatcatcc 59
              |||||||||||||||||||||
Sbjct: 176019 ccatcgatccatccatcatcc 175999
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 43      cgatccatccatcatccccttcctc 67
               |||||||||||||||||||| ||||
Sbjct: 4578341 cgatccatccatcatcccctacctc 4578317
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>gb|AE014133.1| Streptococcus mutans UA159, complete genome
          Length = 2030921

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 135     tcttcttgcttgccaattgct 155
               |||||||||||||||||||||
Sbjct: 1102190 tcttcttgcttgccaattgct 1102210
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>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1297_C09
          Length = 163378

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 43     cgatccatccatcatccccttcctc 67
              |||||||||||||||||||| ||||
Sbjct: 113720 cgatccatccatcatcccctacctc 113696
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>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence
          Length = 210614

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 73    ctgcctcttcttctccttcgtgcag 97
             ||||||||||||||||| |||||||
Sbjct: 29089 ctgcctcttcttctcctccgtgcag 29065
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>emb|AL606925.16| Mouse DNA sequence from clone RP23-12J1 on chromosome 4, complete
              sequence
          Length = 239244

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     ccatcgatccatccatcatcc 59
              |||||||||||||||||||||
Sbjct: 169130 ccatcgatccatccatcatcc 169110



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     ccatcgatccatccatcatcc 59
              |||||||||||||||||||||
Sbjct: 168795 ccatcgatccatccatcatcc 168775
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>dbj|AP003116.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1241F12
          Length = 142424

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 319    ccatcctcatcctgctgacca 339
              |||||||||||||||||||||
Sbjct: 107996 ccatcctcatcctgctgacca 107976
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>ref|NM_148136.1| Arabidopsis thaliana unknown protein AT5G55893 mRNA, complete cds
          Length = 801

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  gctgcctcttcttctccttc 91
           ||||||||||||||||||||
Sbjct: 112 gctgcctcttcttctccttc 93
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>gb|AC098644.4| Takifugu rubripes clone 205P11, complete sequence
          Length = 89481

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 70   gcgctgcctcttcttctcct 89
            ||||||||||||||||||||
Sbjct: 4692 gcgctgcctcttcttctcct 4711
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>ref|XM_521058.1| PREDICTED: Pan troglodytes similar to L-type calcium channel
           alpha-1 subunit (LOC465630), mRNA
          Length = 673

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 320 catcctcatcctgctgacca 339
           ||||||||||||||||||||
Sbjct: 504 catcctcatcctgctgacca 523
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>ref|NM_001794.2| Homo sapiens cadherin 4, type 1, R-cadherin (retinal) (CDH4), mRNA
          Length = 3063

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 320  catcctcatcctgctgacca 339
            ||||||||||||||||||||
Sbjct: 2237 catcctcatcctgctgacca 2256
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>gb|BC101651.1| Homo sapiens cadherin 4, type 1, R-cadherin (retinal), mRNA (cDNA
            clone MGC:126700 IMAGE:8069157), complete cds
          Length = 2911

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 320  catcctcatcctgctgacca 339
            ||||||||||||||||||||
Sbjct: 2311 catcctcatcctgctgacca 2330
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>gb|AF235097.2| Homo sapiens chromosome X multiple clones map p11.23, complete sequence
          Length = 140335

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   catcctcatcctgctgacca 339
             ||||||||||||||||||||
Sbjct: 38258 catcctcatcctgctgacca 38239
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>gb|AC134611.4| Mus musculus BAC clone RP23-98D8 from chromosome 15, complete sequence
          Length = 198894

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   catggtctttcctcttcttg 142
             ||||||||||||||||||||
Sbjct: 67367 catggtctttcctcttcttg 67386
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>ref|NM_005183.2| Homo sapiens calcium channel, voltage-dependent, alpha 1F subunit
           (CACNA1F), mRNA
          Length = 6080

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 320 catcctcatcctgctgacca 339
           ||||||||||||||||||||
Sbjct: 347 catcctcatcctgctgacca 366
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>gb|AC149133.1| Pan troglodytes chromosome X clone RP43-010O16 map human ortholog p11.23
              complete sequence
          Length = 179327

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    catcctcatcctgctgacca 339
              ||||||||||||||||||||
Sbjct: 166400 catcctcatcctgctgacca 166381
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 36       gagccatcgatccatccatc 55
                ||||||||||||||||||||
Sbjct: 24174247 gagccatcgatccatccatc 24174266



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      catcgatccatccatcatcc 59
               ||||||||||||||||||||
Sbjct: 5871952 catcgatccatccatcatcc 5871971
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>ref|XM_538035.2| PREDICTED: Canis familiaris similar to calcium channel,
           voltage-dependent, alpha 1F subunit (LOC480915), mRNA
          Length = 5118

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 320 catcctcatcctgctgacca 339
           ||||||||||||||||||||
Sbjct: 225 catcctcatcctgctgacca 244
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>gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genomic sequence, complete
             sequence
          Length = 140980

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    gagccatcgatccatccatc 55
             ||||||||||||||||||||
Sbjct: 49585 gagccatcgatccatccatc 49566
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>gb|AC119395.2| Mus musculus chromosome 8 clone MGS1-178N23 map A3, complete sequence
          Length = 92300

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    gctgcctcttcttctccttc 91
             ||||||||||||||||||||
Sbjct: 91127 gctgcctcttcttctccttc 91146
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>gb|AC129592.5| Mus musculus BAC clone RP24-86A6 from chromosome 3, complete sequence
          Length = 186218

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     catcgatccatccatcatcc 59
              ||||||||||||||||||||
Sbjct: 132157 catcgatccatccatcatcc 132138
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>ref|XM_546847.2| PREDICTED: Canis familiaris similar to polycystic kidney disease 1
            like 3 (LOC489727), mRNA
          Length = 5259

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  gctggccatcctcatcctgctgac 337
            ||||| ||||||||||||||||||
Sbjct: 4908 gctggtcatcctcatcctgctgac 4931
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>gb|AC158393.2| Mus musculus BAC clone RP23-368G21 from chromosome 14, complete
             sequence
          Length = 200173

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   ggcagatatccatggtcttt 132
             ||||||||||||||||||||
Sbjct: 36104 ggcagatatccatggtcttt 36123
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>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNAa0021B21, from chromosome 3, complete sequence
          Length = 139208

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     catcgatccatccatcatcc 59
              ||||||||||||||||||||
Sbjct: 100782 catcgatccatccatcatcc 100801
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 365    cgtgagcgtgccgcgcgccaccaa 388
              ||||||||||| ||||||||||||
Sbjct: 738747 cgtgagcgtgcggcgcgccaccaa 738770
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>emb|AL353696.8| Human DNA sequence from clone RP11-560G8 on chromosome 9, complete
              sequence
          Length = 181717

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    agctaagagcctaagacagg 217
              ||||||||||||||||||||
Sbjct: 102116 agctaagagcctaagacagg 102097
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>emb|AL136379.19| Human DNA sequence from clone RP5-881P19 on chromosome 1q42.11-42.3
             Contains the WNT3A gene for wingless-type MMTV integration
             site family member 3A protein, a novel protein, the ARF1
             gene for ADP-ribosylation factor 1 protein, a C1orf35 gene
             for chromosome 1 open reading frame 35, the MRPL55 gene
             for  mitochondrial ribosomal protein L55, a novel
             processed pseudogene and six CpG islands, complete
             sequence
          Length = 127816

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    atccatccatcatccccttc 64
             ||||||||||||||||||||
Sbjct: 78365 atccatccatcatccccttc 78384
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>emb|BX548246.17| Zebrafish DNA sequence from clone CH211-274P15 in linkage group 14,
             complete sequence
          Length = 155919

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ccatcgatccatccatcatc 58
             ||||||||||||||||||||
Sbjct: 91848 ccatcgatccatccatcatc 91829
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>emb|AL109850.1|SPCC830 S.pombe chromosome III cosmid c830
          Length = 31214

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 33  aaagagccatcgatccatcc 52
           ||||||||||||||||||||
Sbjct: 344 aaagagccatcgatccatcc 325
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>emb|AJ224874.1|HSAJ4874 Homo sapiens mRNA for L-type calcium channel alpha-1 subunit,
           complete CDS
          Length = 6036

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 320 catcctcatcctgctgacca 339
           ||||||||||||||||||||
Sbjct: 347 catcctcatcctgctgacca 366
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>emb|AJ006216.1|HSA6216 Homo sapiens CACNA1F gene, exons 1 to 48
          Length = 31501

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 320  catcctcatcctgctgacca 339
            ||||||||||||||||||||
Sbjct: 4806 catcctcatcctgctgacca 4825
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>gb|AC113169.2| Homo sapiens chromosome 3 clone RP11-322K13, complete sequence
          Length = 174293

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     ccatccatcatccccttcct 66
              ||||||||||||||||||||
Sbjct: 109951 ccatccatcatccccttcct 109932
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>gb|DQ397860.1| Cenarchaeum symbiosum clone C07E09, complete sequence
          Length = 42614

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   ctcggcgctggccatcctca 327
             ||||||||||||||||||||
Sbjct: 28710 ctcggcgctggccatcctca 28691
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>dbj|AK124724.1| Homo sapiens cDNA FLJ42734 fis, clone BRAWH2014414, highly  similar
            to Cadherin-4 precursor
          Length = 3100

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 320  catcctcatcctgctgacca 339
            ||||||||||||||||||||
Sbjct: 2266 catcctcatcctgctgacca 2285
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>dbj|AK091496.1| Homo sapiens cDNA FLJ34177 fis, clone FCBBF3016451, highly similar to
            RETINAL-CADHERIN PRECURSOR
          Length = 3310

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 320  catcctcatcctgctgacca 339
            ||||||||||||||||||||
Sbjct: 2507 catcctcatcctgctgacca 2526
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>gb|AC112213.2| Homo sapiens chromosome 3 clone RP11-223D18, complete sequence
          Length = 144201

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   ccatccatcatccccttcct 66
            ||||||||||||||||||||
Sbjct: 6607 ccatccatcatccccttcct 6588
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>gb|AF314839.1| Orchis quadripunctata nad1 gene, intron 2; mitochondrial gene for
           mitochondrial product
          Length = 1110

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 129 ctttcctcttcttgcttgcc 148
           ||||||||||||||||||||
Sbjct: 688 ctttcctcttcttgcttgcc 669
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>gb|AF314837.1| Disperis lindleyana nad1 gene, intron 2; mitochondrial gene for
           mitochondrial product
          Length = 1337

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 129 ctttcctcttcttgcttgcc 148
           ||||||||||||||||||||
Sbjct: 674 ctttcctcttcttgcttgcc 655
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>gb|S75228.1| btn=homeodomain gene buttonless [Drosophila, shibire cell line,
           mRNA, 2322 nt]
          Length = 2322

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 66  tcgtgcgctgcctcttcttctccttcgt 93
           ||||||||||| ||||||||| ||||||
Sbjct: 444 tcgtgcgctgcttcttcttctacttcgt 471
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>ref|NM_001023463.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC1620.14c),
            partial mRNA
          Length = 5043

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   aaagagccatcgatccatcc 52
            ||||||||||||||||||||
Sbjct: 3506 aaagagccatcgatccatcc 3525
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>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0085F02, complete sequence
          Length = 128535

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    catcgatccatccatcatcc 59
             ||||||||||||||||||||
Sbjct: 21574 catcgatccatccatcatcc 21593
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 36       gagccatcgatccatccatc 55
                ||||||||||||||||||||
Sbjct: 24091716 gagccatcgatccatccatc 24091735



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      catcgatccatccatcatcc 59
               ||||||||||||||||||||
Sbjct: 5871165 catcgatccatccatcatcc 5871184
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>gb|AC004916.2|AC004916 Homo sapiens PAC clone RP5-891L14 from 7p22, complete sequence
          Length = 129014

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    atccatccatcatccccttc 64
             ||||||||||||||||||||
Sbjct: 13570 atccatccatcatccccttc 13589
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     tctcggcgctggccatcctc 326
               ||||||||||||||||||||
Sbjct: 2435213 tctcggcgctggccatcctc 2435194
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>gb|AF201304.1|AF201304 Homo sapiens voltage-gated L-type calcium channel alpha-1 subunit
           mRNA, complete cds
          Length = 6070

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 320 catcctcatcctgctgacca 339
           ||||||||||||||||||||
Sbjct: 347 catcctcatcctgctgacca 366
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>dbj|AB162437.1| Schizosaccharomyces pombe snf22 gene for SNF2-family ATP dependent
            chromatin remodeling factor Snf22, complete cds
          Length = 5043

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   aaagagccatcgatccatcc 52
            ||||||||||||||||||||
Sbjct: 3506 aaagagccatcgatccatcc 3525
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>dbj|AB018120.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWJ3
          Length = 42356

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    gctgcctcttcttctccttc 91
             ||||||||||||||||||||
Sbjct: 30664 gctgcctcttcttctccttc 30683
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>gb|BC112150.1| Homo sapiens cadherin 4, type 1, R-cadherin (retinal), mRNA (cDNA
            clone MGC:138355 IMAGE:8327618), complete cds
          Length = 2911

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 320  catcctcatcctgctgacca 339
            ||||||||||||||||||||
Sbjct: 2311 catcctcatcctgctgacca 2330
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>emb|BX004834.13| Zebrafish DNA sequence from clone CH211-42E22 in linkage group 18,
            complete sequence
          Length = 188895

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 39   ccatcgatccatccatcatccccttcct 66
            ||||| ||||||||||| ||||||||||
Sbjct: 4954 ccatccatccatccatcctccccttcct 4981
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>gb|AF067227.1|AF067227 Homo sapiens voltage-gated L-type calcium channel alpha-1 subunit
           (CACNA1F) mRNA, complete cds
          Length = 5813

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 320 catcctcatcctgctgacca 339
           ||||||||||||||||||||
Sbjct: 90  catcctcatcctgctgacca 109
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 311    ggcgctggccatcctcatcctgctgacc 338
              ||||||||||||| |||| |||||||||
Sbjct: 673939 ggcgctggccatcgtcatgctgctgacc 673912
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 362     cggcgtgagcgtgccgcgcg 381
               ||||||||||||||||||||
Sbjct: 3082647 cggcgtgagcgtgccgcgcg 3082628
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>gb|AC136147.4| Mus musculus BAC clone RP23-18B3 from 8, complete sequence
          Length = 210916

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     gctgcctcttcttctccttc 91
              ||||||||||||||||||||
Sbjct: 193383 gctgcctcttcttctccttc 193364
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>gb|AC132407.3| Mus musculus BAC clone RP23-343G12 from 8, complete sequence
          Length = 205357

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 72   gctgcctcttcttctccttc 91
            ||||||||||||||||||||
Sbjct: 2854 gctgcctcttcttctccttc 2835
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>gb|L34059.1|HUMCA4A Homo sapiens cadherin-4 mRNA, complete cds
          Length = 3048

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 320  catcctcatcctgctgacca 339
            ||||||||||||||||||||
Sbjct: 2237 catcctcatcctgctgacca 2256


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,427,977
Number of Sequences: 3902068
Number of extensions: 3427977
Number of successful extensions: 88230
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87619
Number of HSP's gapped (non-prelim): 611
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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