Clone Name	bast41d03
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|AF027808.1|AF027808 Zea mays HCF106 precursor protein (Hcf106...	244	2e-61
2	gb|AF237945.1|AF237945 Zea mays HCF106C precursor protein (Hcf10...	228	1e-56
3	gb|AY109585.1| Zea mays CL1262_1 mRNA sequence	228	1e-56
4	dbj|AK059555.1| Oryza sativa (japonica cultivar-group) cDNA clon...	208	1e-50
5	dbj|AK120313.1| Oryza sativa (japonica cultivar-group) cDNA clon...	141	2e-30
6	gb|AF237944.1|AF237944 Zea mays HCF106C precursor protein (Hcf10...	98	3e-17
7	gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome...	78	3e-11
8	gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome...	78	3e-11
9	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
10	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	78	3e-11
11	dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...	64	4e-07
12	dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic D...	64	4e-07
13	dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic D...	64	4e-07
14	ref|NM_124623.2| Arabidopsis thaliana HCF106 AT5G52440 (HCF106) ...	50	0.007
15	gb|BT005414.1| Arabidopsis thaliana clone U51172 putative HCF106...	50	0.007
16	dbj|AK118733.1| Arabidopsis thaliana At5g52440 mRNA for putative...	50	0.007
17	gb|AF139188.1|AF139188 Arabidopsis thaliana HCF106 mRNA, complet...	50	0.007
18	ref|XM_511015.1| PREDICTED: Pan troglodytes similar to chemokine...	44	0.41
19	gb|AC018557.9| Homo sapiens chromosome 16 clone RP11-63M22, comp...	44	0.41
20	gb|AC010542.7| Homo sapiens chromosome 16 clone RP11-403P17, com...	44	0.41
21	gb|AC124169.3| Mus musculus BAC clone RP23-151G15 from 19, compl...	42	1.6
22	emb|AL365400.19| Human DNA sequence from clone RP11-471G13 on ch...	42	1.6
23	dbj|AK157680.1| Mus musculus activated spleen cDNA, RIKEN full-l...	42	1.6
24	gb|AC156543.10| Mus musculus chromosome 15, clone RP23-220F2, co...	42	1.6
25	gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome...	40	6.4
26	gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome	40	6.4
27	emb|AL035659.22|HS979N1 Human DNA sequence from clone RP5-979N1 ...	40	6.4
28	emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52),...	40	6.4
29	gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome	40	6.4
30	dbj|AK023849.1| Homo sapiens cDNA FLJ13787 fis, clone PLACE4000670	40	6.4
31	gb|AY282416.1| Homo sapiens Toll-interleukin 1 receptor (TIR) do...	40	6.4
32	dbj|AK086131.1| Mus musculus 15 days embryo head cDNA, RIKEN ful...	40	6.4
33	gb|AF021246.1|AF021246 Babesia bigemina RAP-1b (RAP1b) gene, CT-...	40	6.4
34	dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...	40	6.4
35	gb|AC007342.6| Homo sapiens chromosome 16 clone RP11-44F14, comp...	40	6.4
36	gb|AC007345.5|AC007345 Homo sapiens chromosome 16 clone RP11-466...	40	6.4
37	gb|AC139353.3| Homo sapiens chromosome 19 clone LLNLR-257F11, co...	40	6.4
38	gb|AC114732.5| Homo sapiens BAC clone RP13-1012F16 from 2, compl...	40	6.4
39	dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge...	40	6.4
40	dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic D...	40	6.4
41	gb|AC004876.2|AC004876 Homo sapiens PAC clone RP4-747G18 from 7q...	40	6.4
42	dbj|AP001318.6| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	6.4
43	emb|BX000989.10| Mouse DNA sequence from clone RP23-33D17 on chr...	40	6.4
44	gb|AF021247.1|AF021247 Babesia bigemina RAP-1b (RAP1b) gene, 13-...	40	6.4
45	dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp...	40	6.4
46	gb|AC130656.11| Mus musculus chromosome 15, clone RP23-305M4, co...	40	6.4
47	gb|M63796.1|HUMMMDA Human DNA from cosmid MMDA from chromosome 1...	40	6.4

---

>gb|AF027808.1|AF027808 Zea mays HCF106 precursor protein (Hcf106) mRNA, nuclear gene
           encoding chloroplast protein, complete cds
          Length = 1125

 Score =  244 bits (123), Expect = 2e-61
 Identities = 177/195 (90%)
 Strand = Plus / Plus

                                                                       
Query: 260 tgtttggcgttggagctcctgaagctctggtcattggagtggtcgccttgctggtttttg 319
           ||||||| ||||||||||| ||||| |||||||||||||| ||||||||| |||| || |
Sbjct: 266 tgtttggagttggagctcccgaagcactggtcattggagtagtcgccttgttggtattcg 325

                                                                       
Query: 320 gccccaagggtctagcagaggcagccaggagtttggggaagactttgcgtgcgttccaac 379
           ||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||
Sbjct: 326 gccccaagggtctagcagaggtagccaggaatttggggaagactttgcgtgctttccaac 385

                                                                       
Query: 380 cgactatcagagagctacaggatgtatcaagggatttcaagaacactcttgaacgagaaa 439
           | || || |||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct: 386 caaccattagagagctacaggatgtatcaagggagttcaggagcactcttgaacgagaaa 445

                          
Query: 440 ttggacttgatgagg 454
           | ||| |||||||||
Sbjct: 446 tcggaattgatgagg 460

---

>gb|AF237945.1|AF237945 Zea mays HCF106C precursor protein (Hcf106C) mRNA, complete cds;
           chloroplast gene for chloroplast product
          Length = 1091

 Score =  228 bits (115), Expect = 1e-56
 Identities = 169/187 (90%)
 Strand = Plus / Plus

                                                                       
Query: 268 gttggagctcctgaagctctggtcattggagtggtcgccttgctggtttttggccccaag 327
           ||||||||||| ||||| |||||||||||||| ||||||||| |||| || |||||||||
Sbjct: 269 gttggagctcccgaagcactggtcattggagtagtcgccttgttggtgttcggccccaag 328

                                                                       
Query: 328 ggtctagcagaggcagccaggagtttggggaagactttgcgtgcgttccaaccgactatc 387
           ||||||||||||| |||||||| ||||||||||||||||||||| |||||||| || || 
Sbjct: 329 ggtctagcagaggtagccaggaatttggggaagactttgcgtgctttccaaccaaccatt 388

                                                                       
Query: 388 agagagctacaggatgtatcaagggatttcaagaacactcttgaacgagaaattggactt 447
           |||||| ||||||||||||||||||| |||| || |||||||||||||||||| ||| ||
Sbjct: 389 agagagatacaggatgtatcaagggagttcaggagcactcttgaacgagaaatcggaatt 448

                  
Query: 448 gatgagg 454
           |||||||
Sbjct: 449 gatgagg 455

---

>gb|AY109585.1| Zea mays CL1262_1 mRNA sequence
          Length = 1091

 Score =  228 bits (115), Expect = 1e-56
 Identities = 169/187 (90%)
 Strand = Plus / Plus

                                                                       
Query: 268 gttggagctcctgaagctctggtcattggagtggtcgccttgctggtttttggccccaag 327
           ||||||||||| ||||| |||||||||||||| ||||||||| |||| || |||||||||
Sbjct: 269 gttggagctcccgaagcactggtcattggagtagtcgccttgttggtgttcggccccaag 328

                                                                       
Query: 328 ggtctagcagaggcagccaggagtttggggaagactttgcgtgcgttccaaccgactatc 387
           ||||||||||||| |||||||| ||||||||||||||||||||| |||||||| || || 
Sbjct: 329 ggtctagcagaggtagccaggaatttggggaagactttgcgtgctttccaaccaaccatt 388

                                                                       
Query: 388 agagagctacaggatgtatcaagggatttcaagaacactcttgaacgagaaattggactt 447
           |||||| ||||||||||||||||||| |||| || |||||||||||||||||| ||| ||
Sbjct: 389 agagagatacaggatgtatcaagggagttcaggagcactcttgaacgagaaatcggaatt 448

                  
Query: 448 gatgagg 454
           |||||||
Sbjct: 449 gatgagg 455

---

>dbj|AK059555.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G07, full
           insert sequence
          Length = 1217

 Score =  208 bits (105), Expect = 1e-50
 Identities = 174/197 (88%)
 Strand = Plus / Plus

                                                                       
Query: 256 tctttgtttggcgttggagctcctgaagctctggtcattggagtggtcgccttgctggtt 315
           ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||  || | || 
Sbjct: 469 tctttatttggagttggagctcccgaagctctggtcattggagtggttgctctgttagtc 528

                                                                       
Query: 316 tttggccccaagggtctagcagaggcagccaggagtttggggaagactttgcgtgcgttc 375
           ||||| ||||| || |||||||||| |||||||| ||||||||||||||||||||| |||
Sbjct: 529 tttggtcccaaaggactagcagaggtagccaggaatttggggaagactttgcgtgctttc 588

                                                                       
Query: 376 caaccgactatcagagagctacaggatgtatcaagggatttcaagaacactcttgaacga 435
           || || || || ||||||||||||||||| |||||||| |||| || |||||||||||||
Sbjct: 589 cagccaaccattagagagctacaggatgtttcaagggagttcaggagcactcttgaacga 648

                            
Query: 436 gaaattggacttgatga 452
           |||||||||||||||||
Sbjct: 649 gaaattggacttgatga 665

---

>dbj|AK120313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055L11, full
           insert sequence
          Length = 2473

 Score =  141 bits (71), Expect = 2e-30
 Identities = 101/111 (90%)
 Strand = Plus / Plus

                                                                       
Query: 342 agccaggagtttggggaagactttgcgtgcgttccaaccgactatcagagagctacagga 401
           |||||||| ||||||||||||||||||||| ||||| || || || ||||||||||||||
Sbjct: 422 agccaggaatttggggaagactttgcgtgctttccagccaaccattagagagctacagga 481

                                                              
Query: 402 tgtatcaagggatttcaagaacactcttgaacgagaaattggacttgatga 452
           ||| |||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 482 tgtttcaagggagttcaggagcactcttgaacgagaaattggacttgatga 532

---

>gb|AF237944.1|AF237944 Zea mays HCF106C precursor protein (Hcf106C) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 3660

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                       
Query: 268 gttggagctcctgaagctctggtcattggagtggtcgccttgctggtttttggccccaag 327
           ||||||||||| ||||| |||||||||||||| ||||||||| |||| || |||||||||
Sbjct: 425 gttggagctcccgaagcactggtcattggagtagtcgccttgttggtgttcggccccaag 484

                        
Query: 328 ggtctagcagagg 340
           |||||||||||||
Sbjct: 485 ggtctagcagagg 497



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                     
Query: 398  aggatgtatcaagggatttcaagaacactcttgaacgagaaattggacttgatgagg 454
            |||||||||||||||| |||| || |||||||||||||||||| ||| |||||||||
Sbjct: 2245 aggatgtatcaagggagttcaggagcactcttgaacgagaaatcggaattgatgagg 2301



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                       
Query: 342  agccaggagtttggggaagactttgcgtgcgttccaaccgactatcagagagctacagg 400
            |||||||| ||||||||||||||||||||| |||||||| || || |||||| ||||||
Sbjct: 2115 agccaggaatttggggaagactttgcgtgctttccaaccaaccattagagagatacagg 2173

---

>gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0072L08, complete sequence
          Length = 152272

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                    
Query: 398   aggatgtatcaagggatttcaagaacactcttgaacgagaaattggacttgatga 452
             ||||||| |||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 69973 aggatgtttcaagggagttcaggagcactcttgaacgagaaattggacttgatga 69919



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                         
Query: 256   tctttgtttggcgttggagctcctgaagctctggtcattggagtggtcgccttgctggtt 315
             ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||  || | || 
Sbjct: 70543 tctttatttggagttggagctcccgaagctctggtcattggagtggttgctctgttagtc 70484

                                      
Query: 316   tttggccccaagggtctagcagagg 340
             ||||| ||||| || ||||||||||
Sbjct: 70483 tttggtcccaaaggactagcagagg 70459



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 342   agccaggagtttggggaagactttgcgtgcgttccaaccgactatcagagagctacagg 400
             |||||||| ||||||||||||||||||||| ||||| || || || |||||||||||||
Sbjct: 70098 agccaggaatttggggaagactttgcgtgctttccagccaaccattagagagctacagg 70040

---

>gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0072L08, sequencing in progress, complete sequence
          Length = 152272

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                    
Query: 398   aggatgtatcaagggatttcaagaacactcttgaacgagaaattggacttgatga 452
             ||||||| |||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 69973 aggatgtttcaagggagttcaggagcactcttgaacgagaaattggacttgatga 69919



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                         
Query: 256   tctttgtttggcgttggagctcctgaagctctggtcattggagtggtcgccttgctggtt 315
             ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||  || | || 
Sbjct: 70543 tctttatttggagttggagctcccgaagctctggtcattggagtggttgctctgttagtc 70484

                                      
Query: 316   tttggccccaagggtctagcagagg 340
             ||||| ||||| || ||||||||||
Sbjct: 70483 tttggtcccaaaggactagcagagg 70459



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 342   agccaggagtttggggaagactttgcgtgcgttccaaccgactatcagagagctacagg 400
             |||||||| ||||||||||||||||||||| ||||| || || || |||||||||||||
Sbjct: 70098 agccaggaatttggggaagactttgcgtgctttccagccaaccattagagagctacagg 70040

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 398      aggatgtatcaagggatttcaagaacactcttgaacgagaaattggacttgatga 452
                ||||||| |||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 21067658 aggatgtttcaagggagttcaggagcactcttgaacgagaaattggacttgatga 21067604



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                            
Query: 256      tctttgtttggcgttggagctcctgaagctctggtcattggagtggtcgccttgctggtt 315
                ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||  || | || 
Sbjct: 21068228 tctttatttggagttggagctcccgaagctctggtcattggagtggttgctctgttagtc 21068169

                                         
Query: 316      tttggccccaagggtctagcagagg 340
                ||||| ||||| || ||||||||||
Sbjct: 21068168 tttggtcccaaaggactagcagagg 21068144



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 342      agccaggagtttggggaagactttgcgtgcgttccaaccgactatcagagagctacagg 400
                |||||||| ||||||||||||||||||||| ||||| || || || |||||||||||||
Sbjct: 21067783 agccaggaatttggggaagactttgcgtgctttccagccaaccattagagagctacagg 21067725



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 33       gagcagcctcttcctctgct 52
                ||||||||||||||||||||
Sbjct: 12979304 gagcagcctcttcctctgct 12979285

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 398      aggatgtatcaagggatttcaagaacactcttgaacgagaaattggacttgatga 452
                ||||||| |||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 21377899 aggatgtttcaagggagttcaggagcactcttgaacgagaaattggacttgatga 21377845



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                            
Query: 256      tctttgtttggcgttggagctcctgaagctctggtcattggagtggtcgccttgctggtt 315
                ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||  || | || 
Sbjct: 21378469 tctttatttggagttggagctcccgaagctctggtcattggagtggttgctctgttagtc 21378410

                                         
Query: 316      tttggccccaagggtctagcagagg 340
                ||||| ||||| || ||||||||||
Sbjct: 21378409 tttggtcccaaaggactagcagagg 21378385



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 342      agccaggagtttggggaagactttgcgtgcgttccaaccgactatcagagagctacagg 400
                |||||||| ||||||||||||||||||||| ||||| || || || |||||||||||||
Sbjct: 21378024 agccaggaatttggggaagactttgcgtgctttccagccaaccattagagagctacagg 21377966



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 33       gagcagcctcttcctctgct 52
                ||||||||||||||||||||
Sbjct: 13059483 gagcagcctcttcctctgct 13059464

---

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                  
Query: 251    acgcctctttgtttggcgttggagctcctgaagctctggtcattggagtggt 302
              |||| ||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 182107 acgcttctttatttggagttggagctcccgaagctctggttattggagtggt 182158

---

>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0075G19
          Length = 163558

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 251   acgcctctttgtttggcgttggagctcctgaagctctggtcattggagtggt 302
             |||| ||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 47003 acgcttctttatttggagttggagctcccgaagctctggttattggagtggt 47054

---

>dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0681G01, complete sequence
          Length = 184118

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 251   acgcctctttgtttggcgttggagctcctgaagctctggtcattggagtggt 302
             |||| ||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 38435 acgcttctttatttggagttggagctcccgaagctctggttattggagtggt 38384

---

>ref|NM_124623.2| Arabidopsis thaliana HCF106 AT5G52440 (HCF106) mRNA, complete cds
          Length = 1131

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 388 agagagctacaggatgtatcaagggatttcaagaacactcttgaacgagaaattggactt 447
           ||||||||||||||||| ||||| ||||| || |  || ||||| || |||||||| |||
Sbjct: 466 agagagctacaggatgtttcaagagattttaaaagtacccttgagcgtgaaattggcctt 525

                
Query: 448 gatga 452
           |||||
Sbjct: 526 gatga 530

---

>gb|BT005414.1| Arabidopsis thaliana clone U51172 putative HCF106 protein
           (At5g52440) mRNA, complete cds
          Length = 814

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 388 agagagctacaggatgtatcaagggatttcaagaacactcttgaacgagaaattggactt 447
           ||||||||||||||||| ||||| ||||| || |  || ||||| || |||||||| |||
Sbjct: 385 agagagctacaggatgtttcaagagattttaaaagtacccttgagcgtgaaattggcctt 444

                
Query: 448 gatga 452
           |||||
Sbjct: 445 gatga 449

---

>dbj|AK118733.1| Arabidopsis thaliana At5g52440 mRNA for putative HCF106, complete
           cds, clone: RAFL21-08-G12
          Length = 1059

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 388 agagagctacaggatgtatcaagggatttcaagaacactcttgaacgagaaattggactt 447
           ||||||||||||||||| ||||| ||||| || |  || ||||| || |||||||| |||
Sbjct: 408 agagagctacaggatgtttcaagagattttaaaagtacccttgagcgtgaaattggcctt 467

                
Query: 448 gatga 452
           |||||
Sbjct: 468 gatga 472

---

>gb|AF139188.1|AF139188 Arabidopsis thaliana HCF106 mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 1013

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 388 agagagctacaggatgtatcaagggatttcaagaacactcttgaacgagaaattggactt 447
           ||||||||||||||||| ||||| ||||| || |  || ||||| || |||||||| |||
Sbjct: 385 agagagctacaggatgtttcaagagattttaaaagtacccttgagcgtgaaattggcctt 444

                
Query: 448 gatga 452
           |||||
Sbjct: 445 gatga 449

---

>ref|XM_511015.1| PREDICTED: Pan troglodytes similar to chemokine-like factor
           superfamily 3 isoform a (LOC454146), mRNA
          Length = 1581

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 154 cttcatcgccctcctcccctcc 175
           ||||||||||||||||||||||
Sbjct: 528 cttcatcgccctcctcccctcc 549

---

>gb|AC018557.9| Homo sapiens chromosome 16 clone RP11-63M22, complete sequence
          Length = 180709

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 154   cttcatcgccctcctcccctcc 175
             ||||||||||||||||||||||
Sbjct: 44104 cttcatcgccctcctcccctcc 44125

---

>gb|AC010542.7| Homo sapiens chromosome 16 clone RP11-403P17, complete sequence
          Length = 188460

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 154    cttcatcgccctcctcccctcc 175
              ||||||||||||||||||||||
Sbjct: 127349 cttcatcgccctcctcccctcc 127370

---

>gb|AC124169.3| Mus musculus BAC clone RP23-151G15 from 19, complete sequence
          Length = 201188

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 335    cagaggcagccaggagtttgg 355
              |||||||||||||||||||||
Sbjct: 160226 cagaggcagccaggagtttgg 160206

---

>emb|AL365400.19| Human DNA sequence from clone RP11-471G13 on chromosome Xq21.32-22.1
             Contains a novel pseudogene,  a heterogeneous nuclear
             ribonucleoprotein D-like (HNRPDL) pseudogene and a
             ribosomal protein S7 (RPS7) pseudogene, complete sequence
          Length = 176391

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 194   ttcggatgatttcttcttgct 214
             |||||||||||||||||||||
Sbjct: 20450 ttcggatgatttcttcttgct 20470

---

>dbj|AK157680.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830303D23 product:unclassifiable, full
           insert sequence
          Length = 3217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 265 ggcgttggagctcctgaagct 285
           |||||||||||||||||||||
Sbjct: 505 ggcgttggagctcctgaagct 525

---

>gb|AC156543.10| Mus musculus chromosome 15, clone RP23-220F2, complete sequence
          Length = 199715

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 265   ggcgttggagctcctgaagct 285
             |||||||||||||||||||||
Sbjct: 26502 ggcgttggagctcctgaagct 26522

---

>gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0095J10 map near S6115, complete sequence
          Length = 123717

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    gagcagcctcttcctctgct 52
             ||||||||||||||||||||
Sbjct: 51201 gagcagcctcttcctctgct 51182

---

>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     ccgccacgccgaccggctgc 121
               ||||||||||||||||||||
Sbjct: 2334060 ccgccacgccgaccggctgc 2334079

---

>emb|AL035659.22|HS979N1 Human DNA sequence from clone RP5-979N1 on chromosome 22q13.1-13.32,
             complete sequence
          Length = 102151

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   ggctgcccccggcggctccc 135
             ||||||||||||||||||||
Sbjct: 36018 ggctgcccccggcggctccc 35999

---

>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome
          Length = 154746

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   cccgcgttcgtctctcgcag 152
             ||||||||||||||||||||
Sbjct: 16572 cccgcgttcgtctctcgcag 16553

---

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 95      agccgggccgccacgccgaccggc 118
               ||||||| ||||||||||||||||
Sbjct: 3435527 agccgggacgccacgccgaccggc 3435550

---

>dbj|AK023849.1| Homo sapiens cDNA FLJ13787 fis, clone PLACE4000670
          Length = 5266

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 116 ggctgcccccggcggctccc 135
           ||||||||||||||||||||
Sbjct: 859 ggctgcccccggcggctccc 840

---

>gb|AY282416.1| Homo sapiens Toll-interleukin 1 receptor (TIR) domain-containing
            adapter protein (TIRAP) gene, complete cds
          Length = 20684

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   cagcctcttcctctgctctt 55
            ||||||||||||||||||||
Sbjct: 3908 cagcctcttcctctgctctt 3927

---

>dbj|AK086131.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:D930007J09 product:unclassifiable, full
           insert sequence
          Length = 2467

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 145 tctcgcagccttcatcgccctcctcccc 172
           |||||| ||| |||||||||||||||||
Sbjct: 544 tctcgccgccgtcatcgccctcctcccc 571

---

>gb|AF021246.1|AF021246 Babesia bigemina RAP-1b (RAP1b) gene, CT-3 variant, complete cds
          Length = 3384

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 224 aaagaagaaggcgtaggaac 243
           ||||||||||||||||||||
Sbjct: 661 aaagaagaaggcgtaggaac 642

---

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 159     tcgccctcctcccctccactggac 182
               ||||||||||||||||| ||||||
Sbjct: 2385971 tcgccctcctcccctcccctggac 2385994

---

>gb|AC007342.6| Homo sapiens chromosome 16 clone RP11-44F14, complete sequence
          Length = 177788

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 326    agggtctagcagaggcagccagga 349
              |||| |||||||||||||||||||
Sbjct: 104309 aggggctagcagaggcagccagga 104332

---

>gb|AC007345.5|AC007345 Homo sapiens chromosome 16 clone RP11-466N18, complete sequence
          Length = 188863

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 326    agggtctagcagaggcagccagga 349
              |||| |||||||||||||||||||
Sbjct: 181708 aggggctagcagaggcagccagga 181685

---

>gb|AC139353.3| Homo sapiens chromosome 19 clone LLNLR-257F11, complete sequence
          Length = 38480

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   gcccccggcggctcccgcgt 139
             ||||||||||||||||||||
Sbjct: 11841 gcccccggcggctcccgcgt 11860

---

>gb|AC114732.5| Homo sapiens BAC clone RP13-1012F16 from 2, complete sequence
          Length = 91526

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   cctcctcccctccactggac 182
             ||||||||||||||||||||
Sbjct: 29404 cctcctcccctccactggac 29385

---

>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     ttcgtctctcgcagccttca 158
               ||||||||||||||||||||
Sbjct: 1026071 ttcgtctctcgcagccttca 1026052

---

>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0077B15
          Length = 139345

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   tcgccctcctcccctccactggac 182
             ||||||||||||||||| ||||||
Sbjct: 88979 tcgccctcctcccctcccctggac 89002

---

>gb|AC004876.2|AC004876 Homo sapiens PAC clone RP4-747G18 from 7q22-31.1, complete sequence
          Length = 126462

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   gaggcagccaggagtttggg 356
             ||||||||||||||||||||
Sbjct: 40522 gaggcagccaggagtttggg 40541

---

>dbj|AP001318.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-712L6, complete
             sequence
          Length = 159565

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    cagcctcttcctctgctctt 55
             ||||||||||||||||||||
Sbjct: 55782 cagcctcttcctctgctctt 55801

---

>emb|BX000989.10| Mouse DNA sequence from clone RP23-33D17 on chromosome 4, complete
              sequence
          Length = 236166

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 434    gagaaattggacttgatgag 453
              ||||||||||||||||||||
Sbjct: 199605 gagaaattggacttgatgag 199624

---

>gb|AF021247.1|AF021247 Babesia bigemina RAP-1b (RAP1b) gene, 13-14 variant, complete cds
          Length = 3412

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 224 aaagaagaaggcgtaggaac 243
           ||||||||||||||||||||
Sbjct: 693 aaagaagaaggcgtaggaac 674

---

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     ccgccacgccgaccggctgc 121
               ||||||||||||||||||||
Sbjct: 1282897 ccgccacgccgaccggctgc 1282916

---

>gb|AC130656.11| Mus musculus chromosome 15, clone RP23-305M4, complete sequence
          Length = 185933

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 31     tcgagcagcctcttcctctgctct 54
              |||||||| |||||||||||||||
Sbjct: 133453 tcgagcagtctcttcctctgctct 133430

---

>gb|M63796.1|HUMMMDA Human DNA from cosmid MMDA from chromosome 19q13.3 (obtained by
             automated sequence analysis)
          Length = 37314

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   gcccccggcggctcccgcgt 139
             ||||||||||||||||||||
Sbjct: 27569 gcccccggcggctcccgcgt 27550


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,975,296
Number of Sequences: 3902068
Number of extensions: 3975296
Number of successful extensions: 78787
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78413
Number of HSP's gapped (non-prelim): 374
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---