Clone Information

BLAST Search Result

Clone Name	bast41d02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog ...	171	6e-43
2	PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog	163	2e-40
3	PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-bindi...	149	2e-36
4	PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)...	149	2e-36
5	PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase ...	149	4e-36
6	PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)...	145	6e-35
7	PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog	140	2e-33
8	PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog	132	4e-31
9	PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog ...	127	9e-30
10	PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog ...	126	2e-29
11	PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B	119	2e-27
12	PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog	99	5e-21
13	PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Pro...	59	7e-09
14	PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (P...	59	7e-09
15	PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (P...	59	7e-09
16	PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (P...	59	7e-09
17	PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (P...	58	9e-09
18	PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)	55	8e-08
19	PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso...	55	1e-07
20	PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4	54	2e-07
21	PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (T...	54	2e-07
22	PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteaso...	53	4e-07
23	PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteaso...	53	4e-07
24	PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (T...	51	1e-06
25	PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteaso...	51	1e-06
26	PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteaso...	51	1e-06
27	PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteaso...	48	9e-06
28	PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteaso...	48	9e-06
29	PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteaso...	47	2e-05
30	PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteaso...	45	8e-05
31	PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteaso...	44	1e-04
32	PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteaso...	42	7e-04
33	PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S1...	41	0.001
34	PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso...	41	0.001
35	PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Prote...	40	0.003
36	PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Prote...	40	0.003
37	PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Prote...	40	0.003
38	PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteaso...	39	0.006
39	PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease sub...	35	0.11
40	PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4	34	0.18
41	CE290_HUMAN (O15078) Centrosomal protein Cep290	32	0.68
42	LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase...	31	1.5
43	MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1	31	1.5
44	CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centroso...	31	1.5
45	LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1....	30	2.0
46	CING_HUMAN (Q9P2M7) Cingulin	30	2.0
47	MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structura...	30	2.0
48	LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1....	30	2.0
49	CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-...	30	2.0
50	FOSL1_HUMAN (P15407) Fos-related antigen 1 (FRA-1)	30	2.6
51	RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase	30	3.4
52	PFDB_HALMA (Q5V1L3) Prefoldin beta subunit (GimC beta subunit)	30	3.4
53	SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like...	29	4.4
54	HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13...	29	4.4
55	CE290_BOVIN (Q9TU23) Centrosomal protein Cep290	29	4.4
56	ATP5I_BOVIN (Q00361) ATP synthase e chain, mitochondrial (EC 3.6...	29	5.8
57	GOGA6_HUMAN (Q9NYA3) Golgin subfamily A member 6 (Golgin linked ...	29	5.8
58	NRBF2_RAT (Q9QYK3) Nuclear receptor-binding factor 2 (NRBF-2)	29	5.8
59	NRBF2_PONPY (Q5R4C9) Nuclear receptor-binding factor 2 (NRBF-2)	29	5.8
60	NRBF2_MOUSE (Q8VCQ3) Nuclear receptor-binding factor 2 (NRBF-2)	29	5.8
61	NRBF2_HUMAN (Q96F24) Nuclear receptor-binding factor 2 (NRBF-2) ...	29	5.8
62	MYOC_BOVIN (Q9XTA3) Myocilin precursor (Trabecular meshwork-indu...	29	5.8
63	RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-assoc...	28	7.6
64	THIC_COREF (Q8FPT3) Thiamine biosynthesis protein thiC	28	7.6
65	MICA1_HUMAN (Q8TDZ2) NEDD9-interacting protein with calponin hom...	28	7.6
66	FOSL1_MOUSE (P48755) Fos-related antigen 1 (FRA-1)	28	7.6
67	IFD1_CAEEL (Q86DC6) Intermediate filament protein ifd-1 (Interme...	28	7.6
68	WTAP_MOUSE (Q9ER69) Wilms' tumor 1-associating protein (WT1-asso...	28	7.6
69	WTAP_HUMAN (Q15007) Wilms' tumor 1-associating protein (WT1-asso...	28	7.6
70	Y2068_ARCFU (O28211) DNA-binding protein AF2068	28	9.9
71	DXR_PELUB (Q4FM64) 1-deoxy-D-xylulose 5-phosphate reductoisomera...	28	9.9
72	AMOT_HUMAN (Q4VCS5) Angiomotin	28	9.9
73	SYV_MYCGE (P47576) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...	28	9.9

>PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog (26S proteasome|
           AAA-ATPase subunit RPT3) (Regulatory particle triple-A
           ATPase subunit 3)
          Length = 408

 Score =  171 bits (434), Expect = 6e-43
 Identities = 86/94 (91%), Positives = 91/94 (96%)
 Frame = +2

Query: 155 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 334
           D++DLYGRLKSL+R +EF +IQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM
Sbjct: 26  DEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 85

Query: 335 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSAS 436
           VD NNGIVGSTTGSNYYVRILSTINRELLKPSAS
Sbjct: 86  VDQNNGIVGSTTGSNYYVRILSTINRELLKPSAS 119

to top

>PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog|
          Length = 413

 Score =  163 bits (412), Expect = 2e-40
 Identities = 82/95 (86%), Positives = 88/95 (92%)
 Frame = +2

Query: 152 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 331
           + +DDLY RLKSLQR +EF+EIQEEYVKDE KNL+RE LRAQEEVKRIQSVPLVIGQFME
Sbjct: 30  DGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFME 89

Query: 332 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSAS 436
           M+D NN IVGSTTGSNYYVRILSTINRELLKPSAS
Sbjct: 90  MIDQNNAIVGSTTGSNYYVRILSTINRELLKPSAS 124

to top

>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)|
           (TBP-7)
          Length = 418

 Score =  149 bits (377), Expect = 2e-36
 Identities = 73/95 (76%), Positives = 84/95 (88%)
 Frame = +2

Query: 152 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 331
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 332 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSAS 436
            VD N  IVGSTTGSNYYVRILSTI+RELLKP+AS
Sbjct: 95  AVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNAS 129

to top

>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7)
          Length = 418

 Score =  149 bits (377), Expect = 2e-36
 Identities = 73/95 (76%), Positives = 84/95 (88%)
 Frame = +2

Query: 152 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 331
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 332 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSAS 436
            VD N  IVGSTTGSNYYVRILSTI+RELLKP+AS
Sbjct: 95  AVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNAS 129

to top

>PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase MS73)|
          Length = 415

 Score =  149 bits (375), Expect = 4e-36
 Identities = 73/94 (77%), Positives = 84/94 (89%)
 Frame = +2

Query: 155 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 334
           + +DLY + K LQR +EF+E+QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E 
Sbjct: 33  ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 92

Query: 335 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSAS 436
           VD N GIVGSTTGSNYYVRILSTI+RELLKPSAS
Sbjct: 93  VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSAS 126

to top

>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7) (CIP21)
          Length = 418

 Score =  145 bits (365), Expect = 6e-35
 Identities = 70/95 (73%), Positives = 83/95 (87%)
 Frame = +2

Query: 152 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 331
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 332 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSAS 436
            VD N  IV STTGSNYYVR++STI+RELLKP+AS
Sbjct: 95  AVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNAS 129

to top

>PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog|
          Length = 423

 Score =  140 bits (352), Expect = 2e-33
 Identities = 67/94 (71%), Positives = 82/94 (87%)
 Frame = +2

Query: 155 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 334
           D  D Y  LK LQRH+E++++QEEY+KDEQ++LKREL+RAQEE+KRIQSVPLVIGQFME 
Sbjct: 37  DGSDEYATLKRLQRHLEYIQLQEEYIKDEQRSLKRELVRAQEEIKRIQSVPLVIGQFMEA 96

Query: 335 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSAS 436
           +D N GIV S+TGSNY VRILST++RE LKPS+S
Sbjct: 97  IDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSS 130

to top

>PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog|
          Length = 389

 Score =  132 bits (332), Expect = 4e-31
 Identities = 64/94 (68%), Positives = 82/94 (87%)
 Frame = +2

Query: 155 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 334
           ++ DLY R K+L+R +E +++QE ++K++ K+LKREL+RAQEEVKRIQSVPLVIGQF+E 
Sbjct: 5   EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64

Query: 335 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSAS 436
           +D N  IVGSTTGSNY VRILST++RELLKPSAS
Sbjct: 65  IDQNTAIVGSTTGSNYVVRILSTLDRELLKPSAS 98

to top

>PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog (YNT1 protein)|
           (TAT-binding homolog 2)
          Length = 428

 Score =  127 bits (320), Expect = 9e-30
 Identities = 62/93 (66%), Positives = 78/93 (83%)
 Frame = +2

Query: 158 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 337
           + D+Y +LK L++  E + +QE+Y+KDEQ++LKREL RAQEEVKRIQSVPLVIGQF+E +
Sbjct: 44  NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPI 103

Query: 338 DGNNGIVGSTTGSNYYVRILSTINRELLKPSAS 436
           D N GIV STTG +Y VRILST++RELLKPS S
Sbjct: 104 DQNTGIVSSTTGMSYVVRILSTLDRELLKPSMS 136

to top

>PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog (TAT-binding|
           protein homolog 2)
          Length = 403

 Score =  126 bits (317), Expect = 2e-29
 Identities = 65/91 (71%), Positives = 76/91 (83%)
 Frame = +2

Query: 164 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG 343
           DLY ++KSL+  ++F  IQEEY+K E KNLKRELL AQEEVKRI+SVPL+IGQ +EMVD 
Sbjct: 24  DLYQKMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEEVKRIRSVPLLIGQLLEMVDS 83

Query: 344 NNGIVGSTTGSNYYVRILSTINRELLKPSAS 436
           N GIV ST+GS   VRILSTI+RELLKPSAS
Sbjct: 84  NTGIVQSTSGSTLCVRILSTIDRELLKPSAS 114

to top

>PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B|
          Length = 414

 Score =  119 bits (299), Expect = 2e-27
 Identities = 58/91 (63%), Positives = 75/91 (82%)
 Frame = +2

Query: 164 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG 343
           D Y +L +L+R +  +++ E+Y+K E +NL++ELL AQEEVKRIQSVPLVIGQF+E VD 
Sbjct: 35  DDYIKLTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVKRIQSVPLVIGQFLEAVDQ 94

Query: 344 NNGIVGSTTGSNYYVRILSTINRELLKPSAS 436
           N+ IVGSTTGSNYYVR+LS ++RELLKP  S
Sbjct: 95  NHAIVGSTTGSNYYVRVLSILDRELLKPGCS 125

to top

>PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog|
          Length = 387

 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 46/90 (51%), Positives = 69/90 (76%)
 Frame = +2

Query: 167 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 346
           L+ R K ++R +  +EI+E YV+ E + LKRE   ++EE+ R++SVPL++GQF+E +D +
Sbjct: 9   LFVRYKQMERKLRLLEIREGYVRKEIETLKREERHSREELDRVKSVPLIMGQFLEPIDSS 68

Query: 347 NGIVGSTTGSNYYVRILSTINRELLKPSAS 436
             IVGST GSN+ VRILST++RELLKP+ +
Sbjct: 69  TAIVGSTAGSNFVVRILSTVDRELLKPNTT 98

to top

>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 26/89 (29%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 349
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 350 GIVGSTTGSNYYVRILSTINRELLKPSAS 436
            IV ++ GS +YV ILS ++++LL+P  S
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCS 149

to top

>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 26/89 (29%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 349
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 350 GIVGSTTGSNYYVRILSTINRELLKPSAS 436
            IV ++ GS +YV ILS ++++LL+P  S
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCS 149

to top

>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 26/89 (29%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 349
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 350 GIVGSTTGSNYYVRILSTINRELLKPSAS 436
            IV ++ GS +YV ILS ++++LL+P  S
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCS 149

to top

>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 26/89 (29%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 349
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 350 GIVGSTTGSNYYVRILSTINRELLKPSAS 436
            IV ++ GS +YV ILS ++++LL+P  S
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCS 149

to top

>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)|
          Length = 448

 Score = 58.2 bits (139), Expect = 9e-09
 Identities = 32/90 (35%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSV---PLVIGQFMEMVDGN 346
           RL  +QR  + + ++EEYV+++++ LK +  R QEE  R+  +   P+ +G   E++D +
Sbjct: 68  RLLKMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDD 126

Query: 347 NGIVGSTTGSNYYVRILSTINRELLKPSAS 436
           + IV ST G  YYV I+S +++++L+P  S
Sbjct: 127 HAIV-STAGPEYYVSIMSFVDKDMLEPGCS 155

to top

>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 26/90 (28%), Positives = 59/90 (65%), Gaps = 3/90 (3%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDGN 346
           +L  L+R  +++ +++E+++++++ LK +  + +EE   V  ++  P+ +G   E++D N
Sbjct: 60  KLLKLERIKDYLMMEDEFIRNQER-LKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDN 118

Query: 347 NGIVGSTTGSNYYVRILSTINRELLKPSAS 436
           + IV ++ GS +YV ILS ++++ L+P  S
Sbjct: 119 HAIVSTSVGSEHYVSILSFVDKDQLEPGCS 148

to top

>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/88 (31%), Positives = 53/88 (60%)
 Frame = +2

Query: 170 YGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 349
           Y +L+ L R +E    ++++++ E+   +RE+ R + EV+R++S PL++G   ++++   
Sbjct: 20  YYKLRELYRRLED---EKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGR 76

Query: 350 GIVGSTTGSNYYVRILSTINRELLKPSA 433
            +V S+TG  + V     IN E LKP A
Sbjct: 77  VVVKSSTGPKFVVNTSQYINEEELKPGA 104

to top

>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4|
          Length = 443

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
 Frame = +2

Query: 176 RLKSL--QRHMEFVEIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVD 340
           RLK L  +R  +++ +++E+++++++ LK +  R +EE   V  ++  P+ +G   E++D
Sbjct: 62  RLKLLKSERIKDYLLMEQEFIQNQER-LKPQEERQEEERAKVDELRGTPMAVGSLEEIID 120

Query: 341 GNNGIVGSTTGSNYYVRILSTINRELLKPSAS 436
             + IV +  GS +YV I+S +++E L+P  S
Sbjct: 121 DQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCS 152

to top

>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding|
           homolog 5)
          Length = 437

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 349
           +L  ++R  + + ++EE+V + +  K  +++    +++++ I+  PL IG   E++D ++
Sbjct: 58  KLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDH 117

Query: 350 GIVGSTTGSNYYVRILSTINRELLKPSAS 436
            IV S T  +YYV ILS +++ELL+P  S
Sbjct: 118 AIVTSPTMPDYYVSILSFVDKELLEPGCS 146

to top

>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 26/82 (31%), Positives = 48/82 (58%)
 Frame = +2

Query: 188 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 367
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV + 
Sbjct: 22  LKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNY 81

Query: 368 TGSNYYVRILSTINRELLKPSA 433
            G  + VRI   I R+ L+P A
Sbjct: 82  NGPRFVVRIAPWIERDKLRPGA 103

to top

>PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 397

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 27/82 (32%), Positives = 47/82 (57%)
 Frame = +2

Query: 188 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 367
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D    IV + 
Sbjct: 20  LKRRIRQLELQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNY 79

Query: 368 TGSNYYVRILSTINRELLKPSA 433
            G  + VRI   I R+ LKP A
Sbjct: 80  NGPRFVVRIAPWIERDKLKPGA 101

to top

>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding|
           protein homolog 2)
          Length = 448

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQE--EVKRIQSVPLVIGQFMEMVDGNN 349
           RL  L+R  +++ ++EE+V  +++    E    ++  +V  ++  P+ +G   E++D ++
Sbjct: 69  RLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESH 128

Query: 350 GIVGSTTGSNYYVRILSTINRELLKPSAS 436
            IV S+ G  YYV ILS ++++ L+P  S
Sbjct: 129 AIVSSSVGPEYYVGILSFVDKDQLEPGCS 157

to top

>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 25/80 (31%), Positives = 48/80 (60%)
 Frame = +2

Query: 188 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 367
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV + 
Sbjct: 22  LKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNY 81

Query: 368 TGSNYYVRILSTINRELLKP 427
            G  + VRI   I+R+ L+P
Sbjct: 82  NGPRFVVRIAPWIDRKKLRP 101

to top

>PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 396

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
 Frame = +2

Query: 152 EDDDDLYGRLKS----LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 319
           ED+   +G        L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G
Sbjct: 3   EDEAQFHGNYDDYVTYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAG 62

Query: 320 QFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKP 427
             +E++D +  IV +  G  + VRI   I++  L+P
Sbjct: 63  SVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRP 98

to top

>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 421

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 23/89 (25%), Positives = 50/89 (56%)
 Frame = +2

Query: 167 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 346
           L  R   L+     +E ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +
Sbjct: 34  LESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKND 93

Query: 347 NGIVGSTTGSNYYVRILSTINRELLKPSA 433
             IV S+ G  + V +   I+ + L P A
Sbjct: 94  RIIVRSSNGPQFLVNVSQYIDEKKLLPGA 122

to top

>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 420

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 23/89 (25%), Positives = 50/89 (56%)
 Frame = +2

Query: 167 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 346
           L  R   L+     +E ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +
Sbjct: 34  LESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKND 93

Query: 347 NGIVGSTTGSNYYVRILSTINRELLKPSA 433
             IV S+ G  + V +   I+ + L P A
Sbjct: 94  RIIVRSSNGPQFLVNVSQYIDEKKLLPGA 122

to top

>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 436

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 21/87 (24%), Positives = 51/87 (58%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGI 355
           R K+L++ +E    ++  +++E +  +  + + + +++R++  PL++G   E++D    I
Sbjct: 57  RRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVI 116

Query: 356 VGSTTGSNYYVRILSTINRELLKPSAS 436
           V S+TG  +   +  T++R  L+P A+
Sbjct: 117 VKSSTGPKFVSNVSPTVDRNELEPGAN 143

to top

>PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 410

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 24/84 (28%), Positives = 48/84 (57%)
 Frame = +2

Query: 182 KSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVG 361
           ++L   +  +E  +  +++E+  L RE+   + E++R ++ PLVI    E++D +   V 
Sbjct: 31  RNLMWKIRKLEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVK 90

Query: 362 STTGSNYYVRILSTINRELLKPSA 433
           STTG ++ +     I+R+ L+P A
Sbjct: 91  STTGPHFVINYSRFIDRKQLEPGA 114

to top

>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 393

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
 Frame = +2

Query: 200 MEFVEIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTT 370
           ++ V + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++
Sbjct: 17  VQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSS 76

Query: 371 GSNYYVRILSTINRELLKPSAS 436
           G N  V I S I+++L+KP  S
Sbjct: 77  GPNLVVNIASHIDQKLIKPGIS 98

to top

>PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 409

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 20/65 (30%), Positives = 38/65 (58%)
 Frame = +2

Query: 239 EQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINREL 418
           E+ +L++EL   + E+ ++ S P +    +E++D N  +V S+TG N  V + + ++   
Sbjct: 38  EKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARS 97

Query: 419 LKPSA 433
           LKP A
Sbjct: 98  LKPGA 102

to top

>PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S10B (Proteasome|
           regulatory particle ATPase-like protein 4)
          Length = 406

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
 Frame = +2

Query: 158 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKN---LKRELLRAQEEVKRIQSVPLVIGQFM 328
           +D+    L S +R +      E+ +KD +K    + ++  +++ ++K +QSV  ++G+ +
Sbjct: 19  EDERTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVL 78

Query: 329 EMVDGNNGIVGSTTGSNYYVRILSTINRELLK 424
           + +     IV +T G  Y V    +IN+E LK
Sbjct: 79  KQLSEEKFIVKATNGPRYVVGCRRSINKEELK 110

to top

>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
 Frame = +2

Query: 179 LKSLQRHMEFVEIQEEYVKDEQKN---------LKRELLRAQEEVKRIQSVPLVIGQFME 331
           LK  +   +  E++ + ++ E KN         +K+E    + E+ +++  PL++G  ++
Sbjct: 18  LKEFKEKTQIAELESKVLRLELKNKDINRENVQIKKENEILKRELDKLRIPPLILGTILD 77

Query: 332 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSA 433
            V+    +V S+TG N+ V +   ++ E + P A
Sbjct: 78  KVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGA 111

to top

>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase
           domain protein 44) (CADp44)
          Length = 389

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 22/90 (24%), Positives = 48/90 (53%)
 Frame = +2

Query: 158 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 337
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 338 DGNNGIVGSTTGSNYYVRILSTINRELLKP 427
                IV +T G  Y V     +++  LKP
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKP 94

to top

>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 22/90 (24%), Positives = 48/90 (53%)
 Frame = +2

Query: 158 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 337
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 338 DGNNGIVGSTTGSNYYVRILSTINRELLKP 427
                IV +T G  Y V     +++  LKP
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKP 94

to top

>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 22/90 (24%), Positives = 48/90 (53%)
 Frame = +2

Query: 158 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 337
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 338 DGNNGIVGSTTGSNYYVRILSTINRELLKP 427
                IV +T G  Y V     +++  LKP
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKP 94

to top

>PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 430

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 20/84 (23%), Positives = 46/84 (54%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGI 355
           R+  L+  +  +E++++ ++ E   L +E    + E+ R++  PL++G  ++ V     +
Sbjct: 48  RIAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVVDKVGERKVV 107

Query: 356 VGSTTGSNYYVRILSTINRELLKP 427
           V S+TG ++ V +   +N + L P
Sbjct: 108 VKSSTGPSFLVNVSHFVNPDDLAP 131

to top

>PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease subunit SUG2)|
           (Proteasomal cap subunit)
          Length = 437

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 15/60 (25%), Positives = 37/60 (61%)
 Frame = +2

Query: 245 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLK 424
           ++L++   + + ++K +QS+  +IG+ M+ +     IV +++G  Y V + ++++R  LK
Sbjct: 82  RDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLK 141

to top

>PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4|
          Length = 388

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 14/59 (23%), Positives = 36/59 (61%)
 Frame = +2

Query: 245 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELL 421
           ++L ++  + ++++K +QSV  +IG+ ++ +D    IV +++G  Y V   + +++  L
Sbjct: 33  RDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHL 91

to top

>CE290_HUMAN (O15078) Centrosomal protein Cep290|
          Length = 1539

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = +2

Query: 155  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 265
            D D L  ++K L+  ++  +++++++K+E K LK+EL
Sbjct: 1437 DADQLKEKIKDLETQLKMSDLEKQHLKEEIKKLKKEL 1473

to top

>LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein-binding protein 1)
           (PTPRF-interacting protein-binding protein 1) (hSGT2)
          Length = 1011

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS--VPLVIGQFMEMVD 340
           ++  +Q   + +E + E +KDE  +LK +L   + EVKR+Q   V  + G+ +E+VD
Sbjct: 244 KVGQMQYEKQRMEQKWESLKDELASLKEQLEEKESEVKRLQEKLVCKMKGEGVEIVD 300

to top

>MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1|
          Length = 722

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +2

Query: 185 SLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 346
           +L++ + F+E Q    K+ +KNL+ EL RA E +  +      + + +E+ + +
Sbjct: 556 TLEKELTFLEAQITREKESRKNLEEELERATESLDEMNRNAFALAKELELANSH 609

to top

>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated|
            protein of 350 kDa)
          Length = 3117

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +2

Query: 155  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE--VKRIQS 301
            D  D+ GR+++L+  +   +     +K EQK  ++E L+AQE   +K+++S
Sbjct: 2046 DQSDIEGRIRALKDELRKRKSVVNQLKKEQKKRQKERLKAQEASLIKQLES 2096

to top

>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (AOF2
           protein) (BRAF35-HDAC complex protein BHC110)
          Length = 853

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 11/29 (37%), Positives = 23/29 (79%)
 Frame = +2

Query: 209 VEIQEEYVKDEQKNLKRELLRAQEEVKRI 295
           +++QE++VKDEQ    +++++ QEE+K +
Sbjct: 417 IQLQEKHVKDEQIEHWKKIVKTQEELKEL 445

to top

>CING_HUMAN (Q9P2M7) Cingulin|
          Length = 1197

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +2

Query: 152 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS 301
           E +++L  +++ LQR +E         +  +  LK+ELLR QEE+K +Q+
Sbjct: 592 EMEEELGEKIEVLQRELEQARASAGDTRQVEV-LKKELLRTQEELKELQA 640

to top

>MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structural maintenance of|
            chromosome-related protein)
          Length = 1499

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +2

Query: 161  DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKR 292
            D+L+ +L + ++   FVE Q   ++ E +NL R + +A+ + K+
Sbjct: 1090 DELHHQLSTSRQRRSFVEKQLTLIESEAENLTRRIRKAERDYKQ 1133

to top

>LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (BRAF35-HDAC
           complex protein BHC110)
          Length = 852

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 11/29 (37%), Positives = 23/29 (79%)
 Frame = +2

Query: 209 VEIQEEYVKDEQKNLKRELLRAQEEVKRI 295
           +++QE++VKDEQ    +++++ QEE+K +
Sbjct: 416 IQLQEKHVKDEQIEHWKKIVKTQEELKEL 444

to top

>CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 911

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +2

Query: 182 KSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 331
           K  Q  +E  +++E+  K+E+K L+ E  R +EE KRI++    I +F +
Sbjct: 381 KERQEALE-AKLEEKRKKEEEKRLREEEKRLREEEKRIKAEKAEITRFFQ 429

to top

>FOSL1_HUMAN (P15407) Fos-related antigen 1 (FRA-1)|
          Length = 271

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +2

Query: 203 EFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG-NNGIVGSTTGSN 379
           +F++ + + ++DE+  L+RE+   Q++ +R++ V        ++ +G   G  GST+G++
Sbjct: 131 DFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKEGDTGSTSGTS 190

to top

>RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase|
          Length = 886

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 191 QRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSV 304
           +R  EF+  QEE +K +++  K E+ R  EE+K I+S+
Sbjct: 173 ERLKEFLS-QEEQIKRQKEEKKAEIERISEEIKSIESL 209

to top

>PFDB_HALMA (Q5V1L3) Prefoldin beta subunit (GimC beta subunit)|
          Length = 129

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 152 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 265
           E  DDL  ++ SL+  +E +E QEE V+++ + L+ EL
Sbjct: 71  EAQDDLEEKVNSLEVRVETLEKQEERVQEQFEELQSEL 108

to top

>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C
            homolog)
          Length = 1288

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = +2

Query: 161  DDLYGRLKSLQ-------RHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 319
            DDL   LKSL+       ++    E     ++ E +NL +EL   QE    +Q   L I 
Sbjct: 956  DDLTAELKSLEDKAAEVVKNTNAAEESLPEIQKEHRNLLQELKVIQENEHALQKDALSIK 1015

Query: 320  QFMEMVDGN 346
              +E +DG+
Sbjct: 1016 LKLEQIDGH 1024

to top

>HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (T-cell reactive protein)
          Length = 399

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +2

Query: 194 RHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVI 316
           R  EF+++ E Y +D +  LKR+ L   E+ + ++S+ ++I
Sbjct: 301 RGTEFIKVPETYYEDMKIRLKRQGLVLDEDFETLKSLDILI 341

to top

>CE290_BOVIN (Q9TU23) Centrosomal protein Cep290|
          Length = 1453

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +2

Query: 155  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 265
            D D L  ++K L+  +   +++++++K+E + LK+EL
Sbjct: 1351 DPDHLMEKIKDLETQLRTSDMEKQHLKEEIQKLKKEL 1387

to top

>ATP5I_BOVIN (Q00361) ATP synthase e chain, mitochondrial (EC 3.6.3.14)|
          Length = 70

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 170 YGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE 283
           Y  LK        +  +E+  +DEQK ++REL  AQE+
Sbjct: 29  YNYLKPRAEEERRLAAEEKKKRDEQKRIERELAEAQED 66

to top

>GOGA6_HUMAN (Q9NYA3) Golgin subfamily A member 6 (Golgin linked to PML)|
           (Golgin-like protein)
          Length = 693

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = +2

Query: 152 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRI 295
           E ++ L  + K+LQ   E +  QE+ ++ +++ L++E  R Q++ KR+
Sbjct: 362 EQNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRL 409

to top

>NRBF2_RAT (Q9QYK3) Nuclear receptor-binding factor 2 (NRBF-2)|
          Length = 287

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLR 271
           ++  L+RH+EF+  + E ++ E K LK E  R
Sbjct: 174 KIAELKRHVEFLVAENERLRKENKQLKAEKAR 205

to top

>NRBF2_PONPY (Q5R4C9) Nuclear receptor-binding factor 2 (NRBF-2)|
          Length = 287

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLR 271
           ++  L+RH+EF+  + E ++ E K LK E  R
Sbjct: 174 KIADLKRHVEFLVAENERLRKENKQLKAEKAR 205

to top

>NRBF2_MOUSE (Q8VCQ3) Nuclear receptor-binding factor 2 (NRBF-2)|
          Length = 287

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLR 271
           ++  L+RH+EF+  + E ++ E K LK E  R
Sbjct: 174 KIADLKRHVEFLVAENERLRKENKQLKAEKAR 205

to top

>NRBF2_HUMAN (Q96F24) Nuclear receptor-binding factor 2 (NRBF-2) (Comodulator of|
           PPAR and RXR)
          Length = 287

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLR 271
           ++  L+RH+EF+  + E ++ E K LK E  R
Sbjct: 174 KIADLKRHVEFLVAENERLRKENKQLKAEKAR 205

to top

>MYOC_BOVIN (Q9XTA3) Myocilin precursor (Trabecular meshwork-induced|
           glucocorticoid response protein)
          Length = 490

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 152 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS 301
           E    L   L++L+R  E +E Q + ++    NL R+    +EE +R+Q+
Sbjct: 98  ETHQGLQRELEALRREREQLETQTQELESAYSNLVRDKSALEEEKRRLQA 147

to top

>RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated protein|
           1 (PRAX-1) (RIM-binding protein 1) (RIM-BP1)
          Length = 1847

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +2

Query: 167 LYGRLKSLQR---HMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQ 298
           L  +L+SL++   HM  V  + + +++E +  +  L   QEEV+R+Q
Sbjct: 424 LQSKLESLEQVLEHMRKVAQRRQQLEEEHEQARLSLQEKQEEVRRLQ 470

to top

>THIC_COREF (Q8FPT3) Thiamine biosynthesis protein thiC|
          Length = 580

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +2

Query: 170 YGRLKSLQRHMEFVEIQE----EYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG-QFMEM 334
           Y R   + R MEFV ++E    E+V+ E   + R        V   +S P++IG +F+  
Sbjct: 120 YARAGEITREMEFVALREHVDPEFVRSE---VARGRAIIPNNVNHPESEPMIIGRKFLTK 176

Query: 335 VDGNNG 352
           ++ N G
Sbjct: 177 INANIG 182

to top

>MICA1_HUMAN (Q8TDZ2) NEDD9-interacting protein with calponin homology and LIM|
            domains (Molecule interacting with CasL protein 1)
          Length = 1067

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 17/69 (24%), Positives = 36/69 (52%)
 Frame = +2

Query: 152  EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 331
            E++   + + +++QR +   EI+    + E + +K EL   ++     Q   L +GQ ++
Sbjct: 919  EEEMKRFCKAQTIQRRLN--EIEAALRELEAEGVKLELALRRQSSSPEQQKKLWVGQLLQ 976

Query: 332  MVDGNNGIV 358
            +VD  N +V
Sbjct: 977  LVDKKNSLV 985

to top

>FOSL1_MOUSE (P48755) Fos-related antigen 1 (FRA-1)|
          Length = 273

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/62 (24%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
 Frame = +2

Query: 203 EFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN---GIVGSTTG 373
           +F++ + + ++DE+  L+RE+   Q++ +R++ V        ++ +G+    G  GST+G
Sbjct: 131 DFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGDKKDPGGSGSTSG 190

Query: 374 SN 379
           ++
Sbjct: 191 AS 192

to top

>IFD1_CAEEL (Q86DC6) Intermediate filament protein ifd-1 (Intermediate filament|
           protein D1) (IF-D1) (Cel IF D1)
          Length = 575

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = +2

Query: 182 KSLQRHMEFVEIQEEYVK-------DEQKNLKRELLRAQEEVKRI 295
           K   +H+  +E +  Y+K       DE+ +LK E+ R + E+KRI
Sbjct: 157 KEQLKHLSDLESETAYIKRLINDCDDEKSHLKTEISRIRGEIKRI 201

to top

>WTAP_MOUSE (Q9ER69) Wilms' tumor 1-associating protein (WT1-associated|
           protein) (Putative pre-mRNA-splicing regulator
           female-lethal(2D) homolog)
          Length = 396

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 173 GRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQ 322
           GR+  L+  +   +   E +K  Q  L   +++  EEV+ +QS  LV+ Q
Sbjct: 178 GRIAQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQ 227

to top

>WTAP_HUMAN (Q15007) Wilms' tumor 1-associating protein (WT1-associated|
           protein) (Putative pre-mRNA-splicing regulator
           female-lethal(2D) homolog)
          Length = 396

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 173 GRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQ 322
           GR+  L+  +   +   E +K  Q  L   +++  EEV+ +QS  LV+ Q
Sbjct: 178 GRIAQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQ 227

to top

>Y2068_ARCFU (O28211) DNA-binding protein AF2068|
          Length = 111

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +2

Query: 176 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRA---QEEVKRIQSVPLVIGQFMEMVDGN 346
           +L  LQR  E  E+Q+E ++ + +  K+ +LRA    E  +R+  + L   +  E V+  
Sbjct: 14  KLMELQRQKELEELQKEEMRRQVEAQKKAILRAILEPEAKERLSRLKLAHPEIAEAVE-- 71

Query: 347 NGIVGSTTGSNYYVRILSTINRELLK 424
           N ++          +I   +  E+LK
Sbjct: 72  NQLIYLAQAGRIQSKITDKMLVEILK 97

to top

>DXR_PELUB (Q4FM64) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 388

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 230 VKDEQKNLKRELLRAQEEVKR-IQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTI 406
           +KD+QKN K ELL   +  K+ I+ V L   + + + D N+ ++ +    N  V++ +  
Sbjct: 21  IKDDQKNFKIELLTVNKNYKKLIKQVKLFNVKNVIVTDYNSFLITTKLLKNAKVKVFNNF 80

Query: 407 N 409
           +
Sbjct: 81  D 81

to top

>AMOT_HUMAN (Q4VCS5) Angiomotin|
          Length = 1084

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 224 EYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 331
           E + DE +NL++EL    E+V R+Q V   I +  E
Sbjct: 439 EILSDENRNLRQELEGCYEKVARLQKVETEIQRVSE 474

to top

>SYV_MYCGE (P47576) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 837

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +2

Query: 161 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 340
           DD   RLKSLQ+   F E +   VK  Q  +K +    +   ++++S  L + ++ + + 
Sbjct: 768 DDTTQRLKSLQKQQAFFESE---VKRSQAIVKNKSFLEKAPKEKVKSEFLKLEEYQKKLT 824

Query: 341 GNNGIVGSTT 370
             N ++   T
Sbjct: 825 ETNQLIAKLT 834


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,166,034
Number of Sequences: 219361
Number of extensions: 298996
Number of successful extensions: 2107
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 2018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2104
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result