>MURC_BUCAI (P57310) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 484

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
 Frame = -1

Query: 295 KITLYQ**LAILSFDSH-ITPILTNLKFQLLSYQLKINQLTSMY---QLNIVYTH*VIIQ 128
           KITLY    AI+  D++ I  ILTNLK ++++Y    N    ++   Q N +    +I++
Sbjct: 219 KITLYG--TAIVCIDNNAICDILTNLKCKIITYGFNKNADVRIFLYKQNNFIGHFYIILK 276

Query: 127 KAKVLNLL--YPNKHLILS 77
             K LN++   P KH  L+
Sbjct: 277 NNKKLNIILNIPGKHNALN 295

>ENK15_HUMAN (Q9HDC0) HERV-K_3q21.2 provirus ancestral Env polyprotein (Envelope|
           polyprotein) (HERV-K(I) envelope protein) [Includes:
           Truncated surface protein (SU)]
          Length = 124

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = -3

Query: 311 IKPT*QNYSLSIITSYPKFRFTYH---SYSYKPKISTIKLSTKNKSTYFNVPIKHCLYSL 141
           + P  QN+ + + T  P  RFTYH     S +P+++ ++  +  +S  F    K CL  +
Sbjct: 54  LMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPQVNYLQDFSYQRSLKFRPKRKPCLKEI 113

Query: 140 SHYTKGKSTKLII 102
               + K+T++++
Sbjct: 114 P--KESKNTEVLV 124

>ATG9_CRYNE (Q5KHR3) Autophagy-related protein 9|
          Length = 879

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = -1

Query: 217 FQLLSYQLKINQLTSMYQLNIVYTH*VIIQKAKVLNLLYPNKHLILSLLKKYNTLSQIPN 38
           FQ+ S+ + + +L  MY+    YTH + +  A +  L +P    ++  ++K+N ++ + N
Sbjct: 191 FQVASFAMSVPRLLDMYRF---YTHLLGVPDADIQTLPWPEIVRLIGDIRKHNPVTSLSN 247

>MATK_PHODC (Q9GHB2) Maturase K (Intron maturase)|
          Length = 514

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = -1

Query: 202 YQLKINQLTSMYQLNIVYTH*VIIQKAKVLNLLYPNKHLILSLLKKYNT 56
           Y++ INQL++     + Y   V+I  + V N +  N  LI +++KK++T
Sbjct: 324 YRIHINQLSNCSFYFLGYLSSVLINPSAVRNQMLENSFLIDTVIKKFDT 372

>ATG9_CRYGA (Q6TGJ4) Autophagy-related protein 9|
          Length = 751

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 14/60 (23%), Positives = 33/60 (55%)
 Frame = -1

Query: 217 FQLLSYQLKINQLTSMYQLNIVYTH*VIIQKAKVLNLLYPNKHLILSLLKKYNTLSQIPN 38
           FQ+ ++ + + +L  MY+    YTH + +  A +  L +P    ++  ++K+N ++ + N
Sbjct: 83  FQVANFAMSVPRLLDMYRF---YTHLLGVPDADIQTLPWPEIVRLIGDIRKHNPVTSLSN 139

>ENK7_HUMAN (O42043) HERV-K_1q23.3 provirus ancestral Env polyprotein (Envelope|
           polyprotein) (HERV-K18 envelope protein) (HERV-K110
           envelope protein) (IDDMK1,2 22 envelope protein)
           (HERV-K(C1a) envelope protein) (HERV-K18 superantigen)
           (IDDMK1,2 22 supera
          Length = 560

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -3

Query: 311 IKPT*QNYSLSIITSYPKFRFTYH---SYSYKPKISTIKLSTKNKSTYFNVPIKHC 153
           + P  QN+ + + T  P  RFTYH     S +P+++ ++  +  +S  F    K C
Sbjct: 61  LMPAVQNWLVEVPTVSPNSRFTYHMVSGMSLRPRVNCLQDFSYQRSLKFRPKGKTC 116

>ENK8_HUMAN (Q9HDB8) HERV-K_3q12.3 provirus ancestral Env polyprotein (Envelope|
           polyprotein) (HERV-K(II) envelope protein) [Includes:
           Truncated surface protein (SU)]
          Length = 245

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 311 IKPT*QNYSLSIITSYPKFRFTYH---SYSYKPKISTIKLSTKNKSTYFNVPIKHCLYSL 141
           + P  QN+ + + T  P  RFTYH     S +P+++ ++  +  +S  F    K C   +
Sbjct: 61  LMPAVQNWLVEVPTVSPNSRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEI 120

Query: 140 SHYTKGKSTKLII 102
               + K+T++++
Sbjct: 121 P--KESKNTEVLV 131

>MATK_ARIGL (Q4H1B9) Maturase K (Intron maturase)|
          Length = 522

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -1

Query: 226 NLKFQLLSYQLKINQLTSMYQLNIVYTH*VIIQKAKVLNLLYPNKHLILSLLKKYNT 56
           N  F   SY++ INQL++     + Y   ++ + + V N +  N  LI +++ K++T
Sbjct: 324 NFHFWYQSYRIHINQLSNCSFYFLGYLSSLLKKSSTVRNQMLENSFLIDTIITKFDT 380

>CND2_HUMAN (Q15003) Condensin complex subunit 2 (Barren homolog protein 1)|
           (Chromosome-associated protein H) (hCAP-H) (XCAP-H
           homolog)
          Length = 741

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -3

Query: 287 SLSIITSYPKFRFTYHSYSYKPKISTIKLSTKNKSTYFNVPIKHCLYSLSHYTKGKSTK 111
           S+ I  + PKF  T  +  Y    + IKLST+NK T  N    H +  +S   K K T+
Sbjct: 92  SIDISATIPKFTNTQITEHYS---TCIKLSTENKITTKNAFGLHLIDFMSEILKQKDTE 147

>GATB_CHLPN (Q9Z9G6) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 488

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 266 YPKFRFTYHSYSYKPKISTIKLSTKNKSTYFNVPIKHC 153
           Y K+      Y     I++I +S KN +T+F V  K C
Sbjct: 308 YDKYHRYIQEYGLSEDIASILISDKNIATFFEVACKDC 345

>NU4M_DASNO (O21334) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 459

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 290 YSLSIITSYPKFRFTYHSYSYKP 222
           YSL ++ +  + +FTYH+YS KP
Sbjct: 406 YSLYMLITTQRGKFTYHTYSIKP 428

>POK12_HUMAN (P63135) HERV-K_1q22 provirus ancestral Pol protein (HERV-K102 Pol|
            protein) (HERV-K(III) Pol protein) [Includes: Reverse
            transcriptase (RT) (EC 2.7.7.49); Ribonuclease H (EC
            3.1.26.4) (RNase H); Integrase (IN)]
          Length = 1459

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 311  IKPT*QNYSLSIITSYPKFRFTYH---SYSYKPKISTIKLSTKNKSTYFNVPIKHCLYSL 141
            + P  QN+ + + T  P  RFTYH     S +P+++ ++  +  +S  F    K C   +
Sbjct: 932  LMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEI 991

Query: 140  SHYTKGKSTKLII 102
                + K+T++++
Sbjct: 992  P--KESKNTEVLV 1002

>POK10_HUMAN (P10266) HERV-K_5q33.3 provirus ancestral Pol protein (HERV-K10 Pol|
            protein) (HERV-K107 Pol protein) [Includes: Reverse
            transcriptase (RT) (EC 2.7.7.49); Ribonuclease H (EC
            3.1.26.4) (RNase H); Integrase (IN)]
          Length = 1014

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 311  IKPT*QNYSLSIITSYPKFRFTYH---SYSYKPKISTIKLSTKNKSTYFNVPIKHCLYSL 141
            + P  QN+ + + T  P  RFTYH     S +P+++ ++  +  +S  F    K C   +
Sbjct: 932  LMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEI 991

Query: 140  SHYTKGKSTKLII 102
                + K+T++++
Sbjct: 992  P--KESKNTEVLV 1002

>YR804_MIMIV (Q5UR58) Hypothetical protein R804|
          Length = 186

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = -3

Query: 260 KFRFTYHSYSYKPKISTIKLSTKNKSTYFNVPIKHCLYSLSHYTKGKSTKLIIPK 96
           K+RF Y+ Y   PK   IK           +  K+  Y  +   K + TK +  K
Sbjct: 126 KYRFDYYHYKSNPKKIIIKFKNGELYPIIKINSKNATYRTTKKIKHRQTKYVNKK 180

>ENK10_HUMAN (P10267) HERV-K_5q33.3 provirus ancestral Env polyprotein (Envelope|
           polyprotein) (HERV-K10 envelope protein) (HERV-K107
           envelope protein) [Contains: Surface protein (SU);
           Transmembrane protein (TM)]
          Length = 587

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 311 IKPT*QNYSLSIITSYPKFRFTYH---SYSYKPKISTIKLSTKNKSTYFNVPIKHCLYSL 141
           + P  QN+ + + T  P  RFTYH     S +P+++ ++  +  +S  F    K C   +
Sbjct: 61  LMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEI 120

Query: 140 SHYTKGKSTKLII 102
               + K+T++++
Sbjct: 121 P--KESKNTEVLV 131

>ENK6_HUMAN (Q902F8) HERV-K_8p23.1 provirus ancestral Env polyprotein precursor|
           (Envelope polyprotein) (HERV-K115 envelope protein)
           (EnvK6 protein) [Contains: Surface protein (SU);
           Transmembrane protein (TM)]
          Length = 699

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 311 IKPT*QNYSLSIITSYPKFRFTYH---SYSYKPKISTIKLSTKNKSTYFNVPIKHCLYSL 141
           + P  QN+ + + T  P  RFTYH     S +P+++ ++  +  +S  F    K C   +
Sbjct: 172 LMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEI 231

Query: 140 SHYTKGKSTKLII 102
               + K+T++++
Sbjct: 232 P--KESKNTEVLV 242

>ENK5_HUMAN (Q902F9) HERV-K_19p13.11 provirus ancestral Env polyprotein|
           precursor (Envelope polyprotein) (HERV-K113 envelope
           protein) (EnvK5 protein) [Contains: Surface protein
           (SU); Transmembrane protein (TM)]
          Length = 699

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 311 IKPT*QNYSLSIITSYPKFRFTYH---SYSYKPKISTIKLSTKNKSTYFNVPIKHCLYSL 141
           + P  QN+ + + T  P  RFTYH     S +P+++ ++  +  +S  F    K C   +
Sbjct: 172 LMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEI 231

Query: 140 SHYTKGKSTKLII 102
               + K+T++++
Sbjct: 232 P--KESKNTEVLV 242

>ENK2_HUMAN (Q69384) HERV-K_7p22.1 provirus ancestral Env polyprotein precursor|
           (Envelope polyprotein) (HERV-K(HML-2.HOM) envelope
           protein) (HERV-K108 envelope protein) (HERV-K(C7)
           envelope protein) (EnvK2 protein) [Contains: Surface
           protein (SU); Transme
          Length = 699

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 311 IKPT*QNYSLSIITSYPKFRFTYH---SYSYKPKISTIKLSTKNKSTYFNVPIKHCLYSL 141
           + P  QN+ + + T  P  RFTYH     S +P+++ ++  +  +S  F    K C   +
Sbjct: 172 LMPAVQNWLVEVPTVSPICRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEI 231

Query: 140 SHYTKGKSTKLII 102
               + K+T++++
Sbjct: 232 P--KESKNTEVLV 242

>ENK12_HUMAN (P61567) HERV-K_1q22 provirus ancestral Env polyprotein (Envelope|
           polyprotein) (HERV-K102 envelope protein) (HERV-K(III)
           envelope protein) [Contains: Surface protein (SU);
           Transmembrane protein (TM)]
          Length = 588

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 311 IKPT*QNYSLSIITSYPKFRFTYH---SYSYKPKISTIKLSTKNKSTYFNVPIKHCLYSL 141
           + P  QN+ + + T  P  RFTYH     S +P+++ ++  +  +S  F    K C   +
Sbjct: 61  LMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEI 120

Query: 140 SHYTKGKSTKLII 102
               + K+T++++
Sbjct: 121 P--KESKNTEVLV 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,273,761
Number of Sequences: 219361
Number of extensions: 698196
Number of successful extensions: 1863
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1863
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)