ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast41c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DMN_HUMAN (O15061) Desmuslin 29 3.5
2SYA_METKA (Q8TWY1) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 28 5.9
3LWA_ANTEL (Q16992) LWamide neuropeptides precursor [Contains: LW... 28 7.8
4TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1) 28 7.8

>DMN_HUMAN (O15061) Desmuslin|
          Length = 1565

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 215 CPASVEAWRRQRRSLERLPSQLADALLR 298
           C    EA RR+   LE+L ++L DALLR
Sbjct: 230 CAQEAEALRREALGLEQLRARLEDALLR 257



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>SYA_METKA (Q8TWY1) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 915

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 230 EAWRRQRRSLERLPSQLADALLR 298
           E W+ QR+ +ERL  +L +A LR
Sbjct: 780 EEWKEQRKRIERLERELVEAKLR 802



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>LWA_ANTEL (Q16992) LWamide neuropeptides precursor [Contains: LWamide I;|
           Metamorphosin A (LWamide II) (MMA); LWamide III; LWamide
           IV; LWamide V; LWamide VI; LWamide VII; LWamide VIII;
           LWamide IX]
          Length = 514

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 74  EPPLDGRRRNDGIWGSSQSSARRP 3
           +P L G+R+N G+WG S + AR+P
Sbjct: 161 QPGLWGKRQNPGLWGRS-ADARQP 183



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>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)|
          Length = 542

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/74 (28%), Positives = 27/74 (36%)
 Frame = +2

Query: 14  PSSARTPRSHHFASSRQAAARTEPPDLPCGRAVQPMXXXXXXXXXXXVAGNAGEQRLLDR 193
           P + R P+     + R    RTE P+ PC    +P             AG  G  R    
Sbjct: 25  PEAPRRPKQRPAPAQRLRKKRTEAPESPCPTGSKPRKPG---------AGRRGRPREEPS 75

Query: 194 CIDAAARCPASVEA 235
              A AR P +V A
Sbjct: 76  PDPAQARAPQTVYA 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,272,344
Number of Sequences: 219361
Number of extensions: 293458
Number of successful extensions: 994
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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