>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0074P11, complete sequence
          Length = 148753

 Score =  113 bits (57), Expect = 3e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                         
Query: 186   tcgaccgctgcatcgatgcggcggcgcgctgcccggcctccgtggaggcctggcgccgcc 245
             |||||||||||||||| ||||||||| || |  | ||| |||||||||| ||||||||||
Sbjct: 85668 tcgaccgctgcatcgacgcggcggcgggcggggccgccaccgtggaggcgtggcgccgcc 85609

                                                                  
Query: 246   aacgccggtccctcgagcgcctgccctcgcagctggccgacgcgctcctccgc 298
             | ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 85608 agcgccgctccctggagcgcctccccgcgcagctcgccgacgcgctcctccgc 85556

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  113 bits (57), Expect = 3e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                           
Query: 186     tcgaccgctgcatcgatgcggcggcgcgctgcccggcctccgtggaggcctggcgccgcc 245
               |||||||||||||||| ||||||||| || |  | ||| |||||||||| ||||||||||
Sbjct: 6854714 tcgaccgctgcatcgacgcggcggcgggcggggccgccaccgtggaggcgtggcgccgcc 6854655

                                                                    
Query: 246     aacgccggtccctcgagcgcctgccctcgcagctggccgacgcgctcctccgc 298
               | ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 6854654 agcgccgctccctggagcgcctccccgcgcagctcgccgacgcgctcctccgc 6854602

>emb|AJ132478.3|CRE132478 Chlamydomonas reinhardtii cDhc1b gene for cytoplasmic dynein heavy
            chain 1b
          Length = 22023

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 196  catcgatgcggcggcgcgctgcc 218
            |||||||||||||||||||||||
Sbjct: 7396 catcgatgcggcggcgcgctgcc 7374

>gb|AF096277.1|AF096277 Chlamydomonas reinhardtii dynein heavy chain isoform DHC1b (DHC1b)
           mRNA, partial cds
          Length = 3596

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 196 catcgatgcggcggcgcgctgcc 218
           |||||||||||||||||||||||
Sbjct: 168 catcgatgcggcggcgcgctgcc 146

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 261    agcgcctgccctcgcagctggccga 285
              ||||||||||| |||||||||||||
Sbjct: 494277 agcgcctgcccgcgcagctggccga 494301

>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 263    cgcctgccctcgcagctggccgacgcgct 291
              |||||| |||||||| |||||||||||||
Sbjct: 344164 cgcctgacctcgcaggtggccgacgcgct 344192

>emb|CR698895.2|CNS0G27V Tetraodon nigroviridis full-length cDNA
          Length = 1180

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 260 gagcgcctgccctcgcagctggccg 284
           ||||| |||||||||||||||||||
Sbjct: 750 gagcggctgccctcgcagctggccg 774

>emb|CR682062.2|CNS0FP8A Tetraodon nigroviridis full-length cDNA
          Length = 1171

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 260 gagcgcctgccctcgcagctggccg 284
           ||||| |||||||||||||||||||
Sbjct: 741 gagcggctgccctcgcagctggccg 765

>emb|CR682104.2|CNS0FP9G Tetraodon nigroviridis full-length cDNA
          Length = 1169

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 260 gagcgcctgccctcgcagctggccg 284
           ||||| |||||||||||||||||||
Sbjct: 751 gagcggctgccctcgcagctggccg 775

>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 256   cctcgagcgcctgccctcgcagctg 280
             ||||||| |||||||||||||||||
Sbjct: 55285 cctcgagggcctgccctcgcagctg 55309

>gb|M12778.1|SH1GGIII Pseudorabies virus (PRV) glycoprotein gIII mRNA, complete cds
          Length = 1722

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 256  cctcgagcgcctgccctcgcagctg 280
            ||||||| |||||||||||||||||
Sbjct: 1452 cctcgagggcctgccctcgcagctg 1476

>dbj|D49437.1|SH1GGIII3 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1584

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 256  cctcgagcgcctgccctcgcagctg 280
            ||||||| |||||||||||||||||
Sbjct: 1342 cctcgagggcctgccctcgcagctg 1366

>dbj|D49436.1|SH1GGIII2 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1579

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 256  cctcgagcgcctgccctcgcagctg 280
            ||||||| |||||||||||||||||
Sbjct: 1339 cctcgagggcctgccctcgcagctg 1363

>dbj|D49435.1|SH1GGIII1 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1584

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 256  cctcgagcgcctgccctcgcagctg 280
            ||||||| |||||||||||||||||
Sbjct: 1342 cctcgagggcctgccctcgcagctg 1366

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    cggcggcgcgctgcccggcc 223
              ||||||||||||||||||||
Sbjct: 450793 cggcggcgcgctgcccggcc 450812

>gb|AE009373.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 143 of
             187 of the complete sequence
          Length = 13358

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   ctcgagcgcctgccctcgcagctg 280
             |||||||||| |||||||||||||
Sbjct: 12646 ctcgagcgccggccctcgcagctg 12669

>gb|AE009028.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 54 of
            256 of the complete sequence
          Length = 10558

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 163  aaacgcgggcgagcagcggc 182
            ||||||||||||||||||||
Sbjct: 2967 aaacgcgggcgagcagcggc 2986

>gb|AE008240.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 44 of 187
             of the complete sequence
          Length = 14945

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 257   ctcgagcgcctgccctcgcagctg 280
             |||||||||| |||||||||||||
Sbjct: 12705 ctcgagcgccggccctcgcagctg 12682

>ref|XM_764561.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_93_32804_33862) partial mRNA
          Length = 1059

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 178 gcggctcctcgaccgctgcatcga 201
           ||||| ||||||||||||||||||
Sbjct: 81  gcggcacctcgaccgctgcatcga 104

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     gctgcatcgatgcggcggcg 211
               ||||||||||||||||||||
Sbjct: 3820043 gctgcatcgatgcggcggcg 3820024

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 207     cggcgcgctgcccggcctcc 226
               ||||||||||||||||||||
Sbjct: 1799059 cggcgcgctgcccggcctcc 1799040

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 204     cggcggcgcgctgcccggcc 223
               ||||||||||||||||||||
Sbjct: 1770141 cggcggcgcgctgcccggcc 1770160

>gb|AE005783.1| Caulobacter crescentus CB15 section 109 of 359 of the complete genome
          Length = 12468

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  gcggcggcgcgctgcccggc 222
            ||||||||||||||||||||
Sbjct: 1495 gcggcggcgcgctgcccggc 1514

>gb|AF451872.1| Actinomadura hibisca strain JCM 9627 HSP70 gene, partial cds
          Length = 1227

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 214 ctgcccggcctccgtggaggcctggcgc 241
           ||||||||||||| ||| ||||||||||
Sbjct: 294 ctgcccggcctccttggtggcctggcgc 267

>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    aaacgcgggcgagcagcggc 182
              ||||||||||||||||||||
Sbjct: 583800 aaacgcgggcgagcagcggc 583819

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     cggcggcgcgctgcccggcc 223
               ||||||||||||||||||||
Sbjct: 1013960 cggcggcgcgctgcccggcc 1013941

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 273     cgcagctggccgacgcgctc 292
               ||||||||||||||||||||
Sbjct: 4025718 cgcagctggccgacgcgctc 4025737


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,264,545
Number of Sequences: 3902068
Number of extensions: 1264545
Number of successful extensions: 27835
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27043
Number of HSP's gapped (non-prelim): 792
length of query: 298
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 276
effective length of database: 17,147,199,772
effective search space: 4732627137072
effective search space used: 4732627137072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)