ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast41c09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469860.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2215 Score = 155 bits (78), Expect = 1e-34 Identities = 288/358 (80%) Strand = Plus / Minus Query: 23 aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 82 |||||||||| || |||| |||||| | | ||||| || ||||||||||| |||||||| Sbjct: 453 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 394 Query: 83 ggcggaggccggtaacgacgatgctatcgccgagcttatttcctctggcgctgacgccac 142 ||||||| ||||| ||| || || ||| ||| ||| | || ||||| ||| | || Sbjct: 393 ggcggagtccggtgacgcggaggccatcaccgggctcctcgccgaaggcgccgacccgac 334 Query: 143 ctactttgacgcctccggcatgacaccactcatgcgcgcggccaccggtggccacgtcgc 202 | |||| || |||||||| |||| || || |||| |||||||||||||||||||| ||| Sbjct: 333 ccacttcgatgcctccgggttgaccccgctgatgcacgcggccaccggtggccacgccgc 274 Query: 203 tgccgcgcgactcctgctcgatgccggcgcgccctggaacgcgctctctcccgaaggtct 262 | || || || || ||||| ||||||||||| |||||||||||||| ||| || | Sbjct: 273 cgtcgtgcagcttctcctcgacgccggcgcgccatggaacgcgctctcccccacggggat 214 Query: 263 ctctgcgggtgaccttacctccgaccccgccacatacgacctgctcctcgaccacgccct 322 ||| ||||| ||||| ||||||| ||||||| | |||||| ||||||||||||||||| Sbjct: 213 ctccgcgggagacctcgcctccgattccgccaccttcgacctcctcctcgaccacgccct 154 Query: 323 gcgctccgagctcatcctcggcaccgtcgcccgccggcaggcggcccccgcgaactcc 380 |||||||||||| |||||||||||||||| ||||| || |||| |||||| ||||| Sbjct: 153 ccgctccgagctcgtcctcggcaccgtcgctcgccgccaagcggggcccgcggactcc 96 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 393 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatgga 448 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| Sbjct: 95 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatgga 40
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 155 bits (78), Expect = 1e-34 Identities = 288/358 (80%) Strand = Plus / Minus Query: 23 aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 82 |||||||||| || |||| |||||| | | ||||| || ||||||||||| |||||||| Sbjct: 31176109 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 31176050 Query: 83 ggcggaggccggtaacgacgatgctatcgccgagcttatttcctctggcgctgacgccac 142 ||||||| ||||| ||| || || ||| ||| ||| | || ||||| ||| | || Sbjct: 31176049 ggcggagtccggtgacgcggaggccatcaccgggctcctcgccgaaggcgccgacccgac 31175990 Query: 143 ctactttgacgcctccggcatgacaccactcatgcgcgcggccaccggtggccacgtcgc 202 | |||| || |||||||| |||| || || |||| |||||||||||||||||||| ||| Sbjct: 31175989 ccacttcgatgcctccgggttgaccccgctgatgcacgcggccaccggtggccacgccgc 31175930 Query: 203 tgccgcgcgactcctgctcgatgccggcgcgccctggaacgcgctctctcccgaaggtct 262 | || || || || ||||| ||||||||||| |||||||||||||| ||| || | Sbjct: 31175929 cgtcgtgcagcttctcctcgacgccggcgcgccatggaacgcgctctcccccacggggat 31175870 Query: 263 ctctgcgggtgaccttacctccgaccccgccacatacgacctgctcctcgaccacgccct 322 ||| ||||| ||||| ||||||| ||||||| | |||||| ||||||||||||||||| Sbjct: 31175869 ctccgcgggagacctcgcctccgattccgccaccttcgacctcctcctcgaccacgccct 31175810 Query: 323 gcgctccgagctcatcctcggcaccgtcgcccgccggcaggcggcccccgcgaactcc 380 |||||||||||| |||||||||||||||| ||||| || |||| |||||| ||||| Sbjct: 31175809 ccgctccgagctcgtcctcggcaccgtcgctcgccgccaagcggggcccgcggactcc 31175752 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 393 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatgga 448 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| Sbjct: 31175751 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatgga 31175696 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 ggcggcgccgccggacagcaa 46 ||||||||||||||||||||| Sbjct: 22486970 ggcggcgccgccggacagcaa 22486950
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 155 bits (78), Expect = 1e-34 Identities = 288/358 (80%) Strand = Plus / Minus Query: 23 aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 82 |||||||||| || |||| |||||| | | ||||| || ||||||||||| |||||||| Sbjct: 96750 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 96691 Query: 83 ggcggaggccggtaacgacgatgctatcgccgagcttatttcctctggcgctgacgccac 142 ||||||| ||||| ||| || || ||| ||| ||| | || ||||| ||| | || Sbjct: 96690 ggcggagtccggtgacgcggaggccatcaccgggctcctcgccgaaggcgccgacccgac 96631 Query: 143 ctactttgacgcctccggcatgacaccactcatgcgcgcggccaccggtggccacgtcgc 202 | |||| || |||||||| |||| || || |||| |||||||||||||||||||| ||| Sbjct: 96630 ccacttcgatgcctccgggttgaccccgctgatgcacgcggccaccggtggccacgccgc 96571 Query: 203 tgccgcgcgactcctgctcgatgccggcgcgccctggaacgcgctctctcccgaaggtct 262 | || || || || ||||| ||||||||||| |||||||||||||| ||| || | Sbjct: 96570 cgtcgtgcagcttctcctcgacgccggcgcgccatggaacgcgctctcccccacggggat 96511 Query: 263 ctctgcgggtgaccttacctccgaccccgccacatacgacctgctcctcgaccacgccct 322 ||| ||||| ||||| ||||||| ||||||| | |||||| ||||||||||||||||| Sbjct: 96510 ctccgcgggagacctcgcctccgattccgccaccttcgacctcctcctcgaccacgccct 96451 Query: 323 gcgctccgagctcatcctcggcaccgtcgcccgccggcaggcggcccccgcgaactcc 380 |||||||||||| |||||||||||||||| ||||| || |||| |||||| ||||| Sbjct: 96450 ccgctccgagctcgtcctcggcaccgtcgctcgccgccaagcggggcccgcggactcc 96393 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 393 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatgga 448 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| Sbjct: 96392 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatgga 96337
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 155 bits (78), Expect = 1e-34 Identities = 288/358 (80%) Strand = Plus / Minus Query: 23 aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 82 |||||||||| || |||| |||||| | | ||||| || ||||||||||| |||||||| Sbjct: 31266632 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 31266573 Query: 83 ggcggaggccggtaacgacgatgctatcgccgagcttatttcctctggcgctgacgccac 142 ||||||| ||||| ||| || || ||| ||| ||| | || ||||| ||| | || Sbjct: 31266572 ggcggagtccggtgacgcggaggccatcaccgggctcctcgccgaaggcgccgacccgac 31266513 Query: 143 ctactttgacgcctccggcatgacaccactcatgcgcgcggccaccggtggccacgtcgc 202 | |||| || |||||||| |||| || || |||| |||||||||||||||||||| ||| Sbjct: 31266512 ccacttcgatgcctccgggttgaccccgctgatgcacgcggccaccggtggccacgccgc 31266453 Query: 203 tgccgcgcgactcctgctcgatgccggcgcgccctggaacgcgctctctcccgaaggtct 262 | || || || || ||||| ||||||||||| |||||||||||||| ||| || | Sbjct: 31266452 cgtcgtgcagcttctcctcgacgccggcgcgccatggaacgcgctctcccccacggggat 31266393 Query: 263 ctctgcgggtgaccttacctccgaccccgccacatacgacctgctcctcgaccacgccct 322 ||| ||||| ||||| ||||||| ||||||| | |||||| ||||||||||||||||| Sbjct: 31266392 ctccgcgggagacctcgcctccgattccgccaccttcgacctcctcctcgaccacgccct 31266333 Query: 323 gcgctccgagctcatcctcggcaccgtcgcccgccggcaggcggcccccgcgaactcc 380 |||||||||||| |||||||||||||||| ||||| || |||| |||||| ||||| Sbjct: 31266332 ccgctccgagctcgtcctcggcaccgtcgctcgccgccaagcggggcccgcggactcc 31266275 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 393 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatgga 448 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| Sbjct: 31266274 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatgga 31266219 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 ggcggcgccgccggacagcaa 46 ||||||||||||||||||||| Sbjct: 22479999 ggcggcgccgccggacagcaa 22479979
>dbj|AK101534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C14, full insert sequence Length = 1492 Score = 155 bits (78), Expect = 1e-34 Identities = 288/358 (80%) Strand = Plus / Plus Query: 23 aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 82 |||||||||| || |||| |||||| | | ||||| || ||||||||||| |||||||| Sbjct: 32 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 91 Query: 83 ggcggaggccggtaacgacgatgctatcgccgagcttatttcctctggcgctgacgccac 142 ||||||| ||||| ||| || || ||| ||| ||| | || ||||| ||| | || Sbjct: 92 ggcggagtccggtgacgcggaggccatcaccgggctcctcgccgaaggcgccgacccgac 151 Query: 143 ctactttgacgcctccggcatgacaccactcatgcgcgcggccaccggtggccacgtcgc 202 | |||| || |||||||| |||| || || |||| |||||||||||||||||||| ||| Sbjct: 152 ccacttcgatgcctccgggttgaccccgctgatgcacgcggccaccggtggccacgccgc 211 Query: 203 tgccgcgcgactcctgctcgatgccggcgcgccctggaacgcgctctctcccgaaggtct 262 | || || || || ||||| ||||||||||| |||||||||||||| ||| || | Sbjct: 212 cgtcgtgcagcttctcctcgacgccggcgcgccatggaacgcgctctcccccacggggat 271 Query: 263 ctctgcgggtgaccttacctccgaccccgccacatacgacctgctcctcgaccacgccct 322 ||| ||||| ||||| ||||||| ||||||| | |||||| ||||||||||||||||| Sbjct: 272 ctccgcgggagacctcgcctccgattccgccaccttcgacctcctcctcgaccacgccct 331 Query: 323 gcgctccgagctcatcctcggcaccgtcgcccgccggcaggcggcccccgcgaactcc 380 |||||||||||| |||||||||||||||| ||||| || |||| |||||| ||||| Sbjct: 332 ccgctccgagctcgtcctcggcaccgtcgctcgccgccaagcggggcccgcggactcc 389 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 393 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatgga 448 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| Sbjct: 390 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatgga 445
>ref|XM_469859.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1008 Score = 153 bits (77), Expect = 6e-34 Identities = 287/357 (80%) Strand = Plus / Plus Query: 24 atggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggcg 83 ||||||||| || |||| |||||| | | ||||| || ||||||||||| ||||||||| Sbjct: 1 atggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggcg 60 Query: 84 gcggaggccggtaacgacgatgctatcgccgagcttatttcctctggcgctgacgccacc 143 |||||| ||||| ||| || || ||| ||| ||| | || ||||| ||| | ||| Sbjct: 61 gcggagtccggtgacgcggaggccatcaccgggctcctcgccgaaggcgccgacccgacc 120 Query: 144 tactttgacgcctccggcatgacaccactcatgcgcgcggccaccggtggccacgtcgct 203 |||| || |||||||| |||| || || |||| |||||||||||||||||||| ||| Sbjct: 121 cacttcgatgcctccgggttgaccccgctgatgcacgcggccaccggtggccacgccgcc 180 Query: 204 gccgcgcgactcctgctcgatgccggcgcgccctggaacgcgctctctcccgaaggtctc 263 | || || || || ||||| ||||||||||| |||||||||||||| ||| || || Sbjct: 181 gtcgtgcagcttctcctcgacgccggcgcgccatggaacgcgctctcccccacggggatc 240 Query: 264 tctgcgggtgaccttacctccgaccccgccacatacgacctgctcctcgaccacgccctg 323 || ||||| ||||| ||||||| ||||||| | |||||| ||||||||||||||||| Sbjct: 241 tccgcgggagacctcgcctccgattccgccaccttcgacctcctcctcgaccacgccctc 300 Query: 324 cgctccgagctcatcctcggcaccgtcgcccgccggcaggcggcccccgcgaactcc 380 |||||||||||| |||||||||||||||| ||||| || |||| |||||| ||||| Sbjct: 301 cgctccgagctcgtcctcggcaccgtcgctcgccgccaagcggggcccgcggactcc 357 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 393 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatgga 448 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| Sbjct: 358 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatgga 413
>dbj|AK064205.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E04, full insert sequence Length = 1473 Score = 143 bits (72), Expect = 6e-31 Identities = 189/228 (82%) Strand = Plus / Plus Query: 153 gcctccggcatgacaccactcatgcgcgcggccaccggtggccacgtcgctgccgcgcga 212 |||||||| |||| || || |||| |||||||||||||||||||| ||| | || || Sbjct: 151 gcctccgggttgaccccgctgatgcacgcggccaccggtggccacgccgccgtcgtgcag 210 Query: 213 ctcctgctcgatgccggcgcgccctggaacgcgctctctcccgaaggtctctctgcgggt 272 || || ||||| ||||||||||| |||||||||||||| ||| || |||| ||||| Sbjct: 211 cttctcctcgacgccggcgcgccatggaacgcgctctcccccacggggatctccgcggga 270 Query: 273 gaccttacctccgaccccgccacatacgacctgctcctcgaccacgccctgcgctccgag 332 ||||| ||||||| ||||||| | |||||| ||||||||||||||||| ||||||||| Sbjct: 271 gacctcgcctccgattccgccaccttcgacctcctcctcgaccacgccctccgctccgag 330 Query: 333 ctcatcctcggcaccgtcgcccgccggcaggcggcccccgcgaactcc 380 ||| |||||||||||||||| ||||| || |||| |||||| ||||| Sbjct: 331 ctcgtcctcggcaccgtcgctcgccgccaagcggggcccgcggactcc 378 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 393 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatgga 448 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| Sbjct: 379 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatgga 434 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 23 aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 82 |||||||||| || |||| |||||| | | ||||| || ||||||||||| |||||||| Sbjct: 22 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 81 Query: 83 ggcggaggccggt 95 ||||||| ||||| Sbjct: 82 ggcggagtccggt 94
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 cggcgccgccggacagcaagtc 49 |||||||||||||||||||||| Sbjct: 88810 cggcgccgccggacagcaagtc 88789
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete sequence Length = 145590 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 ggcggcgccgccggacagcaa 46 ||||||||||||||||||||| Sbjct: 82217 ggcggcgccgccggacagcaa 82197
>gb|AY659219.1| Synthetic construct Peudomonas aeruginosa clone FLH036667.01F PA2514 gene, partial cds Length = 1023 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 298 acgacctgctcctcgaccacgccctgcgc 326 ||||||||||||||||| |||||||||| Sbjct: 65 acgacctgctcctcgacgccgccctgcgc 93
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 ctgctcgatgccggcgcgccc 236 ||||||||||||||||||||| Sbjct: 921882 ctgctcgatgccggcgcgccc 921902
>gb|AY026914.1| Pseudomonas putida strain P111 czrBA operon, partial sequence; ben operon and ant operon, complete sequence; and catRBCA operon, partial sequence; and unknown gene Length = 15769 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 298 acgacctgctcctcgaccacgccctgcgc 326 ||||||||||||||||| |||||||||| Sbjct: 9791 acgacctgctcctcgacgccgccctgcgc 9763
>gb|AE004678.1| Pseudomonas aeruginosa PAO1, section 239 of 529 of the complete genome Length = 11593 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 298 acgacctgctcctcgaccacgccctgcgc 326 ||||||||||||||||| |||||||||| Sbjct: 6856 acgacctgctcctcgacgccgccctgcgc 6884
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 gtcgcccgccggcaggcggcc 368 ||||||||||||||||||||| Sbjct: 1974285 gtcgcccgccggcaggcggcc 1974305
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ccggtaacgacgatgctatc 110 |||||||||||||||||||| Sbjct: 1599549 ccggtaacgacgatgctatc 1599530
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ccaccggtggccacgtcgct 203 |||||||||||||||||||| Sbjct: 623709 ccaccggtggccacgtcgct 623690
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ctggcgctgacgccacctac 146 |||||||||||||||||||| Sbjct: 2100819 ctggcgctgacgccacctac 2100838
>gb|AY687443.1| Uncultured bacterium clone HZ21 genomic sequence Length = 6412 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 203 tgccgcgcgactcctgctcgatgc 226 |||||||||||| ||||||||||| Sbjct: 5135 tgccgcgcgactgctgctcgatgc 5112
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ggcaatggcggcgccgccgg 39 |||||||||||||||||||| Sbjct: 2085376 ggcaatggcggcgccgccgg 2085357
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cgacctgctcctcgaccacg 318 |||||||||||||||||||| Sbjct: 3427022 cgacctgctcctcgaccacg 3427041
>gb|AY435218.1| Sus scrofa interferon consensus sequence binding protein 1 (ICSBP1) mRNA, partial cds Length = 242 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 ccctgcgctccgagctcatcctcg 342 ||||||||||| |||||||||||| Sbjct: 148 ccctgcgctccaagctcatcctcg 125
>ref|XM_545528.2| PREDICTED: Canis familiaris similar to trans-acting transcription factor 9 (LOC488406), mRNA Length = 2280 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cgcggccaccggtggccacg 198 |||||||||||||||||||| Sbjct: 1363 cgcggccaccggtggccacg 1344
>ref|XM_838158.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1075) partial mRNA Length = 9639 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ccaccggtggccacgtcgct 203 |||||||||||||||||||| Sbjct: 971 ccaccggtggccacgtcgct 952
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ggcggcgccgccggacagca 45 |||||||||||||||||||| Sbjct: 3415790 ggcggcgccgccggacagca 3415809 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 agctcatcctcggcaccgtc 350 |||||||||||||||||||| Sbjct: 2489024 agctcatcctcggcaccgtc 2489043
>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13 Length = 346186 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ggcaatggcggcgccgccgg 39 |||||||||||||||||||| Sbjct: 9447 ggcaatggcggcgccgccgg 9428
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 tggccacgtcgctgccgcgc 210 |||||||||||||||||||| Sbjct: 153495 tggccacgtcgctgccgcgc 153476
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14 Length = 291050 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ggcaatggcggcgccgccgg 39 |||||||||||||||||||| Sbjct: 164502 ggcaatggcggcgccgccgg 164483
>gb|AC084761.2| Gallus gallus clone WAG-69H2, complete sequence Length = 135273 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 cgcccgccggcaggcggcccccgc 373 ||||||||| |||||||||||||| Sbjct: 74368 cgcccgccgccaggcggcccccgc 74391
>gb|AC160141.2| Gallus gallus BAC clone CH261-182D6 from chromosome unknown, complete sequence Length = 240564 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 cgcccgccggcaggcggcccccgc 373 ||||||||| |||||||||||||| Sbjct: 75329 cgcccgccgccaggcggcccccgc 75352
>gb|AC022919.8| Homo sapiens chromosome 18, clone RP11-46D1, complete sequence Length = 159749 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 cccgccggcaggcggccccc 371 |||||||||||||||||||| Sbjct: 68222 cccgccggcaggcggccccc 68241
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 cgtcgcccgccggcaggcggcccc 370 ||||||| |||||||||||||||| Sbjct: 3726837 cgtcgccggccggcaggcggcccc 3726860
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 ctctctcccgaaggtctctc 265 |||||||||||||||||||| Sbjct: 2888546 ctctctcccgaaggtctctc 2888527
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 gcgcgcggccaccggtggcc 195 |||||||||||||||||||| Sbjct: 8026121 gcgcgcggccaccggtggcc 8026102
>gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, complete sequence Length = 224670 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 cccgccggcaggcggccccc 371 |||||||||||||||||||| Sbjct: 3682 cccgccggcaggcggccccc 3663
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ccgtcgcccgccggcaggcg 365 |||||||||||||||||||| Sbjct: 2086385 ccgtcgcccgccggcaggcg 2086366
>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0503B05 Length = 156814 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 gcgcgcggccaccggtggcc 195 |||||||||||||||||||| Sbjct: 14314 gcgcgcggccaccggtggcc 14295
>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09 Length = 160665 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 gcgcgcggccaccggtggcc 195 |||||||||||||||||||| Sbjct: 149536 gcgcgcggccaccggtggcc 149517
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 tggcggcgccgccggacagc 44 |||||||||||||||||||| Sbjct: 101987 tggcggcgccgccggacagc 101968
>gb|AC159010.2| Gallus gallus BAC clone CH261-115H16 from chromosome unknown, complete sequence Length = 209348 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 cgcccgccggcaggcggcccccgc 373 ||||||||| |||||||||||||| Sbjct: 6668 cgcccgccgccaggcggcccccgc 6645 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,446,148 Number of Sequences: 3902068 Number of extensions: 2446148 Number of successful extensions: 58452 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56797 Number of HSP's gapped (non-prelim): 1641 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
