ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast41c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC121777.3| Mus musculus BAC clone RP23-359A23 from chromosom... 40 0.52
2gb|AC069381.8| Homo sapiens chromosome 15, clone RP11-604N3, com... 40 0.52
3ref|XM_943676.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 0.52
4ref|XM_932316.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 0.52
5gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 38 2.1
6emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 38 2.1
7gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 38 2.1
8gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 38 2.1
9emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 38 2.1
10gb|AY675102.1| Ostreococcus tauri retinoblastoma protein (Rb) ge... 38 2.1
11gb|AY741093.1| Integration vector pJK202, complete sequence 36 8.2
12ref|NM_102897.1| Arabidopsis thaliana unknown protein AT1G31620 ... 36 8.2
13ref|NM_190569.1| Oryza sativa (japonica cultivar-group), predic... 36 8.2
14gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 36 8.2
15gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 36 8.2
16emb|AJ744860.1| uncultured bacterium pTB11 plasmid complete genome 36 8.2
17emb|CR706459.2|CNS0G81Z Tetraodon nigroviridis full-length cDNA 36 8.2
18emb|AL591645.35| Human DNA sequence from clone RP13-971O21 on ch... 36 8.2
19emb|AL121966.10|HSJ189K14 Human DNA sequence from clone RP1-189K... 36 8.2
20ref|XM_783596.1| PREDICTED: Strongylocentrotus purpuratus simila... 36 8.2
21emb|Y13833.1|SCY13833 Streptomyces coelicolor arsC (partial), gl... 36 8.2
22emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete ... 36 8.2
23emb|BX640435.1| Bordetella parapertussis strain 12822, complete ... 36 8.2
24emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 36 8.2
25emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g... 36 8.2
26emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 36 8.2
27emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4,... 36 8.2
28gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 36 8.2
29gb|AE005883.1| Caulobacter crescentus CB15 section 209 of 359 of... 36 8.2
30gb|AC148755.6| Medicago truncatula clone mth2-24n16, complete se... 36 8.2
31gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 36 8.2
32dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 36 8.2
33gb|L25317.1|CCRILVBN Caulobacter crescentus leader peptide, acet... 36 8.2
34dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 36 8.2
35dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 36 8.2
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 36 8.2
37dbj|AB103463.1| Streptomyces sp. AM-7161 medermycin biosynthetic... 36 8.2
38gb|AC074360.5|AC074360 Arabidopsis thaliana chromosome 1 BAC F27... 36 8.2
39gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 36 8.2
40dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic D... 36 8.2
41dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 36 8.2
42dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D... 36 8.2
43dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic D... 36 8.2
44dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 36 8.2
45dbj|AP004134.3| Oryza sativa (japonica cultivar-group) genomic D... 36 8.2
46gb|AC004151.1|AC004151 Homo sapiens chromosome 19, cosmid R28738... 36 8.2
47emb|CR848749.13| Zebrafish DNA sequence from clone CH211-147F13 ... 36 8.2
48dbj|AP003403.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 36 8.2
49dbj|AP003715.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 36 8.2
50emb|AL591205.13| Mouse DNA sequence from clone RP23-333M1 on chr... 36 8.2
51gb|M93696.1|RP4TRBAO Plasmid RP4 (trbA-trbO) genes, complete cds 36 8.2
52gb|L27758.1|BIACOMGEN Birmingham IncP-alpha plasmid (R18, R68, R... 36 8.2 
>gb|AC121777.3| Mus musculus BAC clone RP23-359A23 from chromosome 16, complete
             sequence
          Length = 192846

 Score = 40.1 bits (20), Expect = 0.52
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    aggttctttctaggttttag 31
             ||||||||||||||||||||
Sbjct: 79891 aggttctttctaggttttag 79910
to top
>gb|AC069381.8| Homo sapiens chromosome 15, clone RP11-604N3, complete sequence
          Length = 191659

 Score = 40.1 bits (20), Expect = 0.52
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    gcggcggcgcggtcctgccg 58
             ||||||||||||||||||||
Sbjct: 85921 gcggcggcgcggtcctgccg 85902
to top
>ref|XM_943676.1| PREDICTED: Homo sapiens hypothetical protein LOC649378 (LOC649378),
           mRNA
          Length = 561

 Score = 40.1 bits (20), Expect = 0.52
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  gcggcggcgcggtcctgccg 58
           ||||||||||||||||||||
Sbjct: 361 gcggcggcgcggtcctgccg 380
to top
>ref|XM_932316.1| PREDICTED: Homo sapiens hypothetical protein LOC644701 (LOC644701),
           mRNA
          Length = 561

 Score = 40.1 bits (20), Expect = 0.52
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  gcggcggcgcggtcctgccg 58
           ||||||||||||||||||||
Sbjct: 361 gcggcggcgcggtcctgccg 380
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 30      agcgcgggtgcggcggcgc 48
               |||||||||||||||||||
Sbjct: 1269394 agcgcgggtgcggcggcgc 1269376
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 30      agcgcgggtgcggcggcgc 48
               |||||||||||||||||||
Sbjct: 2585407 agcgcgggtgcggcggcgc 2585389
to top
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 31      gcgcgggtgcggcggcgcggtcc 53
               |||| ||||||||||||||||||
Sbjct: 2609830 gcgcaggtgcggcggcgcggtcc 2609852
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     agcgcgggtgcggcggcgc 48
              |||||||||||||||||||
Sbjct: 177538 agcgcgggtgcggcggcgc 177556
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 39      gcggcggcgcggtcctgcc 57
               |||||||||||||||||||
Sbjct: 1131205 gcggcggcgcggtcctgcc 1131187
to top
>gb|AY675102.1| Ostreococcus tauri retinoblastoma protein (Rb) gene, complete cds
          Length = 2964

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 33   gcgggtgcggcggcgcggt 51
            |||||||||||||||||||
Sbjct: 2408 gcgggtgcggcggcgcggt 2426
to top
>gb|AY741093.1| Integration vector pJK202, complete sequence
          Length = 53204

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    gcgcgggtgcggcggcgc 48
             ||||||||||||||||||
Sbjct: 16074 gcgcgggtgcggcggcgc 16091
to top
>ref|NM_102897.1| Arabidopsis thaliana unknown protein AT1G31620 mRNA, complete cds
          Length = 336

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 4   ggagccggaggttctttc 21
           ||||||||||||||||||
Sbjct: 317 ggagccggaggttctttc 300
to top
>ref|NM_190569.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1692

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 34   cgggtgcggcggcgcggt 51
            ||||||||||||||||||
Sbjct: 1317 cgggtgcggcggcgcggt 1300
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 31      gcgcgggtgcggcggcgc 48
               ||||||||||||||||||
Sbjct: 1048037 gcgcgggtgcggcggcgc 1048020
to top
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 30      agcgcgggtgcggcggcg 47
               ||||||||||||||||||
Sbjct: 4855402 agcgcgggtgcggcggcg 4855385
to top
>emb|AJ744860.1| uncultured bacterium pTB11 plasmid complete genome
          Length = 68869

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    gcgcgggtgcggcggcgc 48
             ||||||||||||||||||
Sbjct: 25327 gcgcgggtgcggcggcgc 25344
to top
>emb|CR706459.2|CNS0G81Z Tetraodon nigroviridis full-length cDNA
          Length = 641

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 2   gaggagccggaggttctt 19
           ||||||||||||||||||
Sbjct: 470 gaggagccggaggttctt 487
to top
>emb|AL591645.35| Human DNA sequence from clone RP13-971O21 on chromosome Xp11.1-11.22,
             complete sequence
          Length = 148773

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    aggttctttctaggtttt 29
             ||||||||||||||||||
Sbjct: 23740 aggttctttctaggtttt 23757
to top
>emb|AL121966.10|HSJ189K14 Human DNA sequence from clone RP1-189K14 on chromosome 6q15-16.1
             Contains the 5' end of the EPHA7 gene for ephrin receptor
             A7 and a CpG island, complete sequence
          Length = 112591

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 39    gcggcggcgcggtcctgc 56
             ||||||||||||||||||
Sbjct: 41708 gcggcggcgcggtcctgc 41691
to top
>ref|XM_783596.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9667-PA
           (LOC583698), mRNA
          Length = 576

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 2   gaggagccggaggttctt 19
           ||||||||||||||||||
Sbjct: 304 gaggagccggaggttctt 287
to top
>emb|Y13833.1|SCY13833 Streptomyces coelicolor arsC (partial), glnII genes, ORF2, ORF3 & ORF
          Length = 3873

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 33   gcgggtgcggcggcgcgg 50
            ||||||||||||||||||
Sbjct: 2781 gcgggtgcggcggcgcgg 2764
to top
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16
          Length = 346287

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 39     gcggcggcgcggtcctgc 56
              ||||||||||||||||||
Sbjct: 307978 gcggcggcgcggtcctgc 307961
to top
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14
          Length = 346259

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 39     gcggcggcgcggtcctgc 56
              ||||||||||||||||||
Sbjct: 226862 gcggcggcgcggtcctgc 226845
to top
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 39    gcggcggcgcggtcctgc 56
             ||||||||||||||||||
Sbjct: 15539 gcggcggcgcggtcctgc 15556
to top
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 39    gcggcggcgcggtcctgc 56
             ||||||||||||||||||
Sbjct: 21810 gcggcggcgcggtcctgc 21827
to top
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 33     gcgggtgcggcggcgcgg 50
              ||||||||||||||||||
Sbjct: 272282 gcgggtgcggcggcgcgg 272265
to top
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02,
             complete sequence
          Length = 166804

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 33    gcgggtgcggcggcgcgg 50
             ||||||||||||||||||
Sbjct: 72125 gcgggtgcggcggcgcgg 72142
to top
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 13      ggttctttctaggtttta 30
               ||||||||||||||||||
Sbjct: 1217298 ggttctttctaggtttta 1217315
to top
>gb|AE005883.1| Caulobacter crescentus CB15 section 209 of 359 of the complete genome
          Length = 10450

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 41   ggcggcgcggtcctgccg 58
            ||||||||||||||||||
Sbjct: 3486 ggcggcgcggtcctgccg 3503
to top
>gb|AC148755.6| Medicago truncatula clone mth2-24n16, complete sequence
          Length = 119876

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     ccggaggttctttctagg 25
             ||||||||||||||||||
Sbjct: 80247 ccggaggttctttctagg 80264
to top
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 32      cgcgggtgcggcggcgcg 49
               ||||||||||||||||||
Sbjct: 1041068 cgcgggtgcggcggcgcg 1041085
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 33       gcgggtgcggcggcgcgg 50
                ||||||||||||||||||
Sbjct: 30438748 gcgggtgcggcggcgcgg 30438765
to top
>gb|L25317.1|CCRILVBN Caulobacter crescentus leader peptide, acetolactate synthase
           (ilvB), and acetohydroxy acid synthase (ilvN) genes,
           complete cds
          Length = 2970

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 41  ggcggcgcggtcctgccg 58
           ||||||||||||||||||
Sbjct: 460 ggcggcgcggtcctgccg 477
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 31      gcgcgggtgcggcggcgc 48
               ||||||||||||||||||
Sbjct: 4167145 gcgcgggtgcggcggcgc 4167162
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                      
Query: 29       tagcgcgggtgcggcggcgcgg 50
                ||||||||| ||||||||||||
Sbjct: 14436635 tagcgcgggggcggcggcgcgg 14436656
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 34       cgggtgcggcggcgcggt 51
                ||||||||||||||||||
Sbjct: 36231788 cgggtgcggcggcgcggt 36231771
to top
>dbj|AB103463.1| Streptomyces sp. AM-7161 medermycin biosynthetic gene cluster
            (med-ORF1 - 30) and ORF P - Z , partial and complete cds
          Length = 36202

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 31   gcgcgggtgcggcggcgcggtc 52
            ||||||| ||||||||||||||
Sbjct: 6388 gcgcgggagcggcggcgcggtc 6409
to top
>gb|AC074360.5|AC074360 Arabidopsis thaliana chromosome 1 BAC F27M3 genomic sequence, complete
             sequence
          Length = 110664

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     ggagccggaggttctttc 21
             ||||||||||||||||||
Sbjct: 61623 ggagccggaggttctttc 61640
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 33     gcgggtgcggcggcgcgg 50
              ||||||||||||||||||
Sbjct: 751479 gcgggtgcggcggcgcgg 751462
to top
>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0406G08
          Length = 144233

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 34     cgggtgcggcggcgcggt 51
              ||||||||||||||||||
Sbjct: 108801 cgggtgcggcggcgcggt 108784
to top
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 11    gaggttctttctaggttt 28
             ||||||||||||||||||
Sbjct: 85144 gaggttctttctaggttt 85127
to top
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0554A06
          Length = 165311

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    gcgcgggtgcggcggcgc 48
             ||||||||||||||||||
Sbjct: 12366 gcgcgggtgcggcggcgc 12383
to top
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0036B04
          Length = 136159

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 31     gcgcgggtgcggcggcgc 48
              ||||||||||||||||||
Sbjct: 100404 gcgcgggtgcggcggcgc 100421
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 34      cgggtgcggcggcgcggt 51
               ||||||||||||||||||
Sbjct: 4758960 cgggtgcggcggcgcggt 4758943
to top
>dbj|AP004134.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1116_C12
          Length = 116758

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 29    tagcgcgggtgcggcggcgcgg 50
             ||||||||| ||||||||||||
Sbjct: 45133 tagcgcgggggcggcggcgcgg 45154
to top
>gb|AC004151.1|AC004151 Homo sapiens chromosome 19, cosmid R28738, complete sequence
          Length = 35116

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     aggagccggaggttcttt 20
             ||||||||||||||||||
Sbjct: 19200 aggagccggaggttcttt 19183
to top
>emb|CR848749.13| Zebrafish DNA sequence from clone CH211-147F13 in linkage group 15,
              complete sequence
          Length = 161648

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 14     gttctttctaggttttag 31
              ||||||||||||||||||
Sbjct: 106876 gttctttctaggttttag 106893
to top
>dbj|AP003403.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-750J5, complete
             sequence
          Length = 183902

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    ttctttctaggttttagc 32
             ||||||||||||||||||
Sbjct: 54795 ttctttctaggttttagc 54778
to top
>dbj|AP003715.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-115E19, complete
              sequence
          Length = 163728

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 15     ttctttctaggttttagc 32
              ||||||||||||||||||
Sbjct: 154154 ttctttctaggttttagc 154137
to top
>emb|AL591205.13| Mouse DNA sequence from clone RP23-333M1 on chromosome 11, complete
             sequence
          Length = 183369

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     ccggaggttctttctagg 25
             ||||||||||||||||||
Sbjct: 90977 ccggaggttctttctagg 90994
to top
>gb|M93696.1|RP4TRBAO Plasmid RP4 (trbA-trbO) genes, complete cds
          Length = 13205

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    gcgcgggtgcggcggcgc 48
             ||||||||||||||||||
Sbjct: 11108 gcgcgggtgcggcggcgc 11125
to top
>gb|L27758.1|BIACOMGEN Birmingham IncP-alpha plasmid (R18, R68, RK2, RP1, RP4) complete genome
          Length = 60099

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    gcgcgggtgcggcggcgc 48
             ||||||||||||||||||
Sbjct: 29065 gcgcgggtgcggcggcgc 29082


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 409,713
Number of Sequences: 3902068
Number of extensions: 409713
Number of successful extensions: 56040
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54987
Number of HSP's gapped (non-prelim): 1053
length of query: 58
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 37
effective length of database: 17,151,101,840
effective search space: 634590768080
effective search space used: 634590768080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
to top