Clone Information

BLAST Search Result

Clone Name	bast41b12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (E...	102	4e-22
2	RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (E...	69	4e-12
3	RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (E...	69	4e-12
4	RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (E...	68	9e-12
5	RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (E...	65	8e-11
6	RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II sub...	64	2e-10
7	RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa pol...	62	5e-10
8	RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II sub...	62	8e-10
9	RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa pol...	50	3e-06
10	RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II sub...	42	5e-04
11	RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II sub...	42	5e-04
12	RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II sub...	40	0.003
13	CND1_HUMAN (Q15021) Condensin complex subunit 1 (Chromosome cond...	36	0.038
14	CND1_MOUSE (Q8K2Z4) Condensin complex subunit 1 (Chromosome cond...	35	0.084
15	INT1_MOUSE (Q6P4S8) Integrator complex subunit 1 (Int1)	32	0.93
16	KINH_STRPU (P35978) Kinesin heavy chain	32	0.93
17	DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphat...	31	1.2
18	RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 k...	31	1.2
19	RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 k...	31	1.2
20	TDRD6_HUMAN (O60522) Tudor domain-containing protein 6 (Colon ca...	31	1.2
21	CI010_HUMAN (Q9NZB2) Protein C9orf10	30	2.1
22	INT1_HUMAN (Q8N201) Integrator complex subunit 1 (Int1)	30	2.7
23	CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinas...	30	2.7
24	GABR2_RAT (O88871) Gamma-aminobutyric acid type B receptor, subu...	30	2.7
25	DMBT1_HUMAN (Q9UGM3) Deleted in malignant brain tumors 1 protein...	30	3.5
26	LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-bind...	30	3.5
27	GAG_FSVGA (P03337) Gag polyprotein [Contains: Core protein p15; ...	30	3.5
28	RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC...	30	3.5
29	GATA6_HUMAN (Q92908) Transcription factor GATA-6 (GATA-binding f...	29	4.6
30	FMT_HUMAN (Q96DP5) Methionyl-tRNA formyltransferase, mitochondri...	29	4.6
31	GPRS_DROME (O61366) Serine-enriched protein	29	4.6
32	ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prot...	29	4.6
33	YFEB_YERPE (Q56953) Chelated iron transport system membrane prot...	29	4.6
34	KPRS_STRAW (Q82HE7) Ribose-phosphate pyrophosphokinase (EC 2.7.6...	29	4.6
35	PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain...	29	6.0
36	VP6_AHSV6 (Q64913) VP6 protein (Minor inner core protein VP6)	29	6.0
37	RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC...	29	6.0
38	CP8B1_MOUSE (O88962) Cytochrome P450 8B1 (EC 1.14.13.95) (CYPVII...	29	6.0
39	PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-c...	29	6.0
40	PRRT1_MOUSE (O35449) Proline-rich transmembrane protein 1	29	6.0
41	KPRS_STRCO (Q9K3U0) Ribose-phosphate pyrophosphokinase (EC 2.7.6...	29	6.0
42	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	26	7.5
43	VP6_AHSV3 (Q64909) VP6 protein (Minor inner core protein VP6)	28	7.9
44	CPB2_CAEBR (Q6E3F3) Cytoplasmic polyadenylation element-binding ...	28	7.9
45	RK2_SINAL (P27107) Chloroplast 50S ribosomal protein L2	28	7.9
46	RK2_LOTJA (Q9B1H9) Chloroplast 50S ribosomal protein L2	28	7.9
47	RK2_ARATH (P56791) Chloroplast 50S ribosomal protein L2	28	7.9
48	RNAS1_MESAU (P00682) Ribonuclease pancreatic (EC 3.1.27.5) (RNas...	28	7.9
49	RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast prec...	28	7.9
50	RNAS1_CRIGR (P24717) Ribonuclease pancreatic precursor (EC 3.1.2...	28	7.9
51	RKHD1_HUMAN (Q86XN8) RING finger and KH domain-containing protein 1	28	7.9
52	HEM6_HUMAN (P36551) Coproporphyrinogen III oxidase, mitochondria...	28	7.9
53	RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC...	28	7.9

>RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.6 kDa polypeptide)
          Length = 116

 Score =  102 bits (254), Expect = 4e-22
 Identities = 46/53 (86%), Positives = 53/53 (100%)
 Frame = +2

Query: 284 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRD 442
           MNAP+RYERFVVPEGTKKVS+++DTKI+NAASFT+EREDHTIGNI+RMQLHRD
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRD 53

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>RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.3 kDa polypeptide)
           (RPB11) (RPB14)
          Length = 117

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 30/54 (55%), Positives = 41/54 (75%)
 Frame = +2

Query: 284 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDP 445
           MNAP  +E F++ EG KK++  KDTK+ NA  FTI +EDHT+GNI++ QL +DP
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDP 54

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>RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.3 kDa polypeptide)
           (RPB11)
          Length = 117

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 30/54 (55%), Positives = 41/54 (75%)
 Frame = +2

Query: 284 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDP 445
           MNAP  +E F++ EG KK++  KDTK+ NA  FTI +EDHT+GNI++ QL +DP
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDP 54

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>RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.3 kDa polypeptide)
           (RPB11)
          Length = 117

 Score = 68.2 bits (165), Expect = 9e-12
 Identities = 31/54 (57%), Positives = 41/54 (75%)
 Frame = +2

Query: 284 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDP 445
           MNAP  +E F++ EG KK+  E DTK+ NAA FTI +EDHT+GN++R QL +DP
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDP 54

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>RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
          Length = 117

 Score = 65.1 bits (157), Expect = 8e-11
 Identities = 29/54 (53%), Positives = 40/54 (74%)
 Frame = +2

Query: 284 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDP 445
           MNAP  +E F++ EG KK+  E D K+ NAA FT+ +EDHT+GN++R QL +DP
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDP 54

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>RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 122

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 30/54 (55%), Positives = 42/54 (77%)
 Frame = +2

Query: 284 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDP 445
           MNAP  +E F++ +  KK+  EKDTK+ NAA FTI +EDHT+GN+L++QL +DP
Sbjct: 1   MNAPAAFESFLLLDD-KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDP 53

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>RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC|
           2.7.7.6) (B13.6)
          Length = 120

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 27/53 (50%), Positives = 37/53 (69%)
 Frame = +2

Query: 284 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRD 442
           MNAPDR+E F++ EG  K+  + DTK  NA   T E+EDHT+GN++R +L  D
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLND 53

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>RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 122

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 30/54 (55%), Positives = 41/54 (75%)
 Frame = +2

Query: 284 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDP 445
           MNAP  +E F++ +  KK   EKDTK+ NAA FTI +EDHT+GN+L++QL +DP
Sbjct: 1   MNAPAAFESFLLLDD-KKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDP 53

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>RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa polypeptide (EC|
           2.7.7.6)
          Length = 123

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +2

Query: 284 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRD 442
           MN P+RYE  +   G  KV++E D+K  NAA  T+E+EDHT+ N+L  QL  D
Sbjct: 1   MNQPERYE-LIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSD 52

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>RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 126

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +2

Query: 287 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDP 445
           N P+  +  V+P G +KV  +   K  +   FTI+ EDHTIGN+++  L +DP
Sbjct: 8   NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDP 59

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>RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 126

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +2

Query: 287 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDP 445
           N P+  +  V+P G +KV  +   K  +   FTI+ EDHTIGN+++  L +DP
Sbjct: 8   NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDP 59

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>RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 126

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +2

Query: 287 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDP 445
           N P+  +  V+  G KKV+     K  +   F I+ EDHTIGN++++QL +DP
Sbjct: 8   NKPETVDLLVLAPGEKKVTCTISDK-GDCNIFVIKLEDHTIGNLIKIQLCQDP 59

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>CND1_HUMAN (Q15021) Condensin complex subunit 1 (Chromosome condensation-related|
            SMC-associated protein 1) (Chromosome-associated protein
            D2) (hCAP-D2) (XCAP-D2 homolog)
          Length = 1401

 Score = 36.2 bits (82), Expect = 0.038
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
 Frame = -3

Query: 426  MRRMLPMVWSSRSIVKDAAFMIFVSFSKDTFFVPSGTTKRS*RSGAFISNQHL------- 268
            +RRMLP++WS    V++A    +    +  +  P G + R+ ++ A I N  L       
Sbjct: 675  VRRMLPLIWSKEPGVREAVLNAY----RQLYLNPKGDSARA-KAQALIQNLSLLLVDASV 729

Query: 267  -APSCLLYCGCRSSSKPLQLAMLMPCLWTARRRCWARAPAQG-REAMLVGTAARGREALL 94
                CL    C    K      +   LW       A  P +     ML+G  ARG+  ++
Sbjct: 730  GTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGMMARGKPEIV 789

Query: 93   GS 88
            GS
Sbjct: 790  GS 791

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>CND1_MOUSE (Q8K2Z4) Condensin complex subunit 1 (Chromosome condensation-related|
            SMC-associated protein 1) (Chromosome-associated protein
            D2) (mCAP-D2) (XCAP-D2 homolog)
          Length = 1392

 Score = 35.0 bits (79), Expect = 0.084
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
 Frame = -3

Query: 426  MRRMLPMVWSSRSIVKDAAFMIFVSFSKDTFFVPSGTTKRS*RSGAFISNQHL------- 268
            +RRMLP++WS    V++A    +    +  +  P G + R+ ++   I N  L       
Sbjct: 665  VRRMLPLIWSKEPGVREAVLNAY----RQLYLNPKGDSARA-KAQTLIHNLSLLLVDASV 719

Query: 267  -APSCLLYCGCRSSSKPLQLAMLMPCLWTARRRCWARAPAQGRE----AMLVGTAARGRE 103
                CL    C    K      ++  LW    R   + P+   E     ML+G  ARG+ 
Sbjct: 720  GTIQCLEEILCEFVQKDEVKPAVIQLLW---ERATEKVPSSPLERCSSVMLLGMMARGKP 776

Query: 102  ALLGS 88
             ++GS
Sbjct: 777  EIVGS 781

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>INT1_MOUSE (Q6P4S8) Integrator complex subunit 1 (Int1)|
          Length = 2126

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -2

Query: 343  GHLLCALRHDEALIAV--RGIHLQSTPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAA- 173
            GHLLC  R+ + L+ +  R    QS P        W+ + +Q+   G++D LP+ C    
Sbjct: 869  GHLLCRSRNPDFLLHIIQRQASSQSMP--------WLADLVQSSE-GSLDVLPVQCLCEF 919

Query: 172  LLGESACSREGGDAGGNG 119
            LL ++A S   G+    G
Sbjct: 920  LLHDAADSTASGEEDDEG 937

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>KINH_STRPU (P35978) Kinesin heavy chain|
          Length = 1031

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 102  PPSHGQPFPPASPPSLEQALSPS---NAAEQSIGRASTLPIGG 221
            PPSHG P P +   S E++L+P+   N  +++  R   LP GG
Sbjct: 954  PPSHGSPEPISHNNSFEKSLNPNDAENMEKKANKRLPKLPPGG 996

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>DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent|
           ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP)
           (ADP-ribosylation factor-directed GTPase-activating
           protein 1) (ARF GTPase-activating protein 1)
           (Development and differe
          Length = 1147

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +3

Query: 129 PASPPSLEQALSPSNAAEQSIGRASTLPIGGAWSCSGIHSRANKKEP 269
           P SP S    L P NA +   G  STLP+G   S SG  + + K+ P
Sbjct: 798 PTSPTSEAPPLPPRNAGKGPTGPPSTLPLGTQTS-SGSSTLSKKRPP 843

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>RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 kDa polypeptide|
           (EC 2.7.7.6) (AC19)
          Length = 142

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 371 AASFTIEREDHTIGNILRMQLHRDP 445
           +ASF I  EDHT+GN LR  + ++P
Sbjct: 60  SASFQIVEEDHTLGNALRYVIMKNP 84

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>RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 kDa polypeptide|
           (EC 2.7.7.6)
          Length = 125

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 365 MNAASFTIEREDHTIGNILRMQLHRDP 445
           + + +F I++EDHT+GN LR  + ++P
Sbjct: 32  LTSVTFQIQKEDHTLGNSLRYVIMKNP 58

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>TDRD6_HUMAN (O60522) Tudor domain-containing protein 6 (Colon cancer antigen|
           NY-CO-45) (Fragment)
          Length = 753

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
 Frame = -2

Query: 442 VPVQLHAEDVADGVVFTFNCERCS-IHDLCILL---EGHLLCALRH---DEALIAVRGIH 284
           V VQ   E VAD      NC  C  I D CI+    +GH   AL     ++ L++VR + 
Sbjct: 279 VEVQTAGEQVAD----RRNCIPCPYIGDPCIVRYREDGHYYRALITNICEDYLVSVRLVD 334

Query: 283 LQSTPGSFLFALLW-MPEQLQAPPIGNVDALPMDCSAALLGESACSREGGD 134
             +         LW +P +L + P+    A P   S   + E  CS+EG D
Sbjct: 335 FGNIEDCVDPKALWAIPSELLSVPM---QAFPCCLSGFNISEGLCSQEGND 382

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>CI010_HUMAN (Q9NZB2) Protein C9orf10|
          Length = 1069

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = -2

Query: 337 LLCALRHDEALIAVRGIHLQSTPGSFLFAL---LWMPEQLQAPPIGNVDALPMDCSAALL 167
           L C LR+       R +  Q        AL   L+ P+QLQ   I N+D   +  SA  +
Sbjct: 715 LCCVLRYMVQWPGARILRRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLSALFM 774

Query: 166 GESACSREGGDAGGNGCPWE 107
                +    DA G   PWE
Sbjct: 775 SGVDMALFANDACGQPIPWE 794

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>INT1_HUMAN (Q8N201) Integrator complex subunit 1 (Int1)|
          Length = 2190

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = -2

Query: 343  GHLLCALRHDEALIAV--RGIHLQSTPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAAL 170
            GHLLC  R+ + L+ +  R    QS P        W+ + +Q+   G++D LP+ C    
Sbjct: 863  GHLLCRSRNPDFLLHIIQRQASSQSMP--------WLADLVQSSE-GSLDVLPVQCLCEF 913

Query: 169  L----GESACSREGGDAG 128
            L     + A S E  D G
Sbjct: 914  LLHDAVDDAASGEEDDEG 931

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>CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7 (EC|
           2.7.11.22) (CDC2-related protein kinase 7) (Cdc2-related
           kinase, arginine/serine-rich) (CrkRS)
          Length = 1490

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +3

Query: 102 PPSHGQPFPPASP-PSLEQA--LSPSNAAEQSI--GRASTLPIGGAWSCSGIHSRANKKE 266
           PP    P PP  P P+L Q   L PS  A   +     STLP       S + S+AN + 
Sbjct: 544 PPPQTPPLPPLPPIPALPQQPPLPPSQPAFSQVPASSTSTLPPSTHSKTSAVSSQANSQP 603

Query: 267 P 269
           P
Sbjct: 604 P 604

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>GABR2_RAT (O88871) Gamma-aminobutyric acid type B receptor, subunit 2|
           precursor (GABA-B receptor 2) (GABA-B-R2) (Gb2)
           (GABABR2) (G-protein coupled receptor 51)
          Length = 940

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 96  AEPPSHGQPFPPASPPSLEQALSP 167
           A PPS GQP PP  PP   + L P
Sbjct: 2   ASPPSSGQPRPPPPPPPPARLLLP 25

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>DMBT1_HUMAN (Q9UGM3) Deleted in malignant brain tumors 1 protein precursor|
            (Glycoprotein 340) (Gp-340) (Surfactant
            pulmonary-associated D-binding protein)
          Length = 2413

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = -1

Query: 338  PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 189
            P +    R S H     S P N WL           ++CS   +   PSP  W       
Sbjct: 1441 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSASQSQPTPSPDTWPT----- 1495

Query: 188  GLLGGVAGRE-----RLLKGGRRC 132
                  AG E     RL+ GG RC
Sbjct: 1496 -SRASTAGSESTLALRLVNGGDRC 1518



 Score = 29.3 bits (64), Expect = 4.6
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
 Frame = -1

Query: 338  PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNW-QC*CPA 192
            P +    R S H     S P N WL           ++CS   + + P P  W     PA
Sbjct: 1570 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSAAQSQSTPRPDTWLTTNLPA 1629

Query: 191  YGLLGGVAGRERLLKGGRRC 132
              +    +   RL+ GG RC
Sbjct: 1630 LTVGSESSLALRLVNGGDRC 1649



 Score = 29.3 bits (64), Expect = 4.6
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = -1

Query: 338  PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 189
            P +    R S H     S P N WL           ++CS   +   PSP  W       
Sbjct: 1312 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSASQSQPTPSPDTWPT----- 1366

Query: 188  GLLGGVAGRE-----RLLKGGRRC 132
                  AG E     RL+ GG RC
Sbjct: 1367 -SHASTAGSESSLALRLVNGGDRC 1389



 Score = 29.3 bits (64), Expect = 4.6
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = -1

Query: 338  PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 189
            P +    R S H     S P N WL           ++CS   +   PSP  W       
Sbjct: 1183 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSASQSQPTPSPDTWPT----- 1237

Query: 188  GLLGGVAGRE-----RLLKGGRRC 132
                  AG E     RL+ GG RC
Sbjct: 1238 -SHASTAGSESSLALRLVNGGDRC 1260



 Score = 29.3 bits (64), Expect = 4.6
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = -1

Query: 338  PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 189
            P +    R S H     S P N WL           ++CS   +   PSP  W       
Sbjct: 1054 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHSEDAGVICSASQSRPTPSPDTWPT----- 1108

Query: 188  GLLGGVAGRE-----RLLKGGRRC 132
                  AG E     RL+ GG RC
Sbjct: 1109 -SHASTAGSESSLALRLVNGGDRC 1131



 Score = 29.3 bits (64), Expect = 4.6
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = -1

Query: 338 PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 189
           P +    R S H     S P N WL           ++CS   +   PSP  W       
Sbjct: 295 PIVLDDVRCSGHESYLWSCPHNGWLTHNCGHSEDAGVICSAPQSRPTPSPDTWPT----- 349

Query: 188 GLLGGVAGRE-----RLLKGGRRC 132
                 AG E     RL+ GG RC
Sbjct: 350 -SHASTAGPESSLALRLVNGGDRC 372



 Score = 28.9 bits (63), Expect = 6.0
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = -1

Query: 338  PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 189
            P +    R S H     S P N WL           ++CS   +   PSP  W       
Sbjct: 794  PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSVSQSRPTPSPDTWPT----- 848

Query: 188  GLLGGVAGRE-----RLLKGGRRC 132
                  AG E     RL+ GG RC
Sbjct: 849  -SHASTAGPESSLALRLVNGGDRC 871

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>LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-binding protein 2|
           precursor (LTBP-2)
          Length = 1821

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +3

Query: 96  AEPPSHGQPFPPASPPS-LEQALSPSNAAEQSIGRASTLPI-GGAWSCSGIHSRANKKEP 269
           A+PP+   P  P SPP+     LS ++ ++Q +G + T+ +   A + S + S A    P
Sbjct: 260 AQPPAPQSPPAPQSPPAGTLSGLSQTHPSQQHVGLSRTVRLHPTATASSQLSSNALPPGP 319

Query: 270 GVDWR 284
           G++ R
Sbjct: 320 GLEQR 324

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>GAG_FSVGA (P03337) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30]
          Length = 425

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 99  EPPSHGQPF--PPASPPSLEQALSPSNAAEQSIGRASTLP 212
           +PPS  +PF  PP  P SL Q LSP  +A  +      LP
Sbjct: 169 DPPSWVRPFLPPPKPPTSLPQPLSPQPSAPLTSSLYPVLP 208

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>RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
           (DNA-directed RNA polymerase I 16 kDa polypeptide)
           (RPA16)
          Length = 133

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 323 EGTKKVSFEKDTKI---MNAASFTIEREDHTIGNILRMQLHRDP 445
           EG +K + E         +  +F +  EDHT+GN LR  + ++P
Sbjct: 20  EGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNP 63

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>GATA6_HUMAN (Q92908) Transcription factor GATA-6 (GATA-binding factor 6)|
          Length = 449

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 24/73 (32%), Positives = 25/73 (34%)
 Frame = -1

Query: 239 AGAAPSPSNWQC*CPAYGLLGGVAGRERLLKGGRRCWWERLPVGGRLCWDPVPAAGQRRL 60
           AGA P         P YG  GG AG      GG         V  R  + P P       
Sbjct: 73  AGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGS--AAAHVSARFPYSPSPPMANGAA 130

Query: 59  RPTGRAAAVGRGG 21
           R  G  AA G GG
Sbjct: 131 REPGGYAAAGSGG 143

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>FMT_HUMAN (Q96DP5) Methionyl-tRNA formyltransferase, mitochondrial precursor|
           (EC 2.1.2.9) (MtFMT)
          Length = 389

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 104 RLCWDPVPAAGQRRLRPTGRAAAVGRGGYE 15
           R CW P  A G RR RP+ +  A+ R G+E
Sbjct: 6   RRCWGPPLAHGARRGRPSPQWRALARLGWE 35

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>GPRS_DROME (O61366) Serine-enriched protein|
          Length = 1302

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +3

Query: 99   EPPSHGQPFPPASPPSLEQALSPSNAAEQSIGRASTLPIGG 221
            EPPS    F P   P LEQ  SP    E  +     L  GG
Sbjct: 925  EPPSRRSSFDPPRSPFLEQLRSPGVDTETDLINLQRLDSGG 965

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>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)|
           (Ataxin-2-related protein)
          Length = 1075

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 102 PPSHGQPFPPASPPSLEQALSPSNAAEQSIGRA-----STLPIGGAWSCSGIHS 248
           PP+ G+ +PP SP S   A   ++  E  IG A     +++P+  + S  G+ S
Sbjct: 438 PPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGS 491

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>YFEB_YERPE (Q56953) Chelated iron transport system membrane protein yfeB|
          Length = 296

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 439 PVQLHAEDVADGVVFTFNCERCSIHDLCILLEGHLLCAL 323
           PV +  E V D V  T+N    +I+D    L G  +CAL
Sbjct: 4   PVFVRPELVVDNVTVTYNNGHTAIYDASFSLTGGTICAL 42

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>KPRS_STRAW (Q82HE7) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 324

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = -1

Query: 296 QGHSSPINTWLLLVCSTVDAGAAPSPSNWQC*CPAYGLLGGVAGRERLLKGGRRCWWERL 117
           Q H++PIN W++     +DA    S  +     P Y    G A +++  +G       R 
Sbjct: 65  QSHTAPINKWIMEQLIMIDALKRASARSITVIVPFY----GYARQDKKHRG-------RE 113

Query: 116 PVGGRLCWDPVPAAGQRRL 60
           P+  RL  D +  AG  R+
Sbjct: 114 PISARLIADLMKTAGADRI 132

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>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing|
           protein 2) (Activated in prostate cancer protein)
          Length = 2839

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 379 RCSIHDLCILLEGHLLCALRHDEALIAVR 293
           R S+ D  +++ GHLL  L H+EA+  +R
Sbjct: 377 RLSLGDELLVINGHLLVGLSHEEAVAILR 405

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>VP6_AHSV6 (Q64913) VP6 protein (Minor inner core protein VP6)|
          Length = 369

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 150 QGREAMLVGTAARGREALLGSCTCGGAAEASADWASSGGGPRRL*TLA 7
           QGR  ++  +   G E+L     C G ++   + A +GGG RR+  LA
Sbjct: 167 QGRGGLVAKSGECGGESLDRIGGCSGNSKTEGEEAKAGGGDRRIGGLA 214

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>RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
          Length = 114

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 368 NAASFTIEREDHTIGNILRMQLHRDP 445
           +  +F +  EDHT+GN LR  + ++P
Sbjct: 22  SCVTFVLHEEDHTLGNSLRYMVMKNP 47

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>CP8B1_MOUSE (O88962) Cytochrome P450 8B1 (EC 1.14.13.95) (CYPVIIIB1)|
           (7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase)
           (Sterol 12-alpha-hydroxylase)
           (7-alpha-hydroxy-4-cholesten-3-one 12-alpha-hydroxylase)
          Length = 500

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 299 RYERFVVPEGTKKVSFEKDTK 361
           +Y+RF+ P+GT+KV F K  K
Sbjct: 403 KYDRFLNPDGTRKVDFYKSGK 423

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>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing|
           protein 2) (Plakophilin-related armadillo repeat
           protein-interacting PDZ protein)
          Length = 2766

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 379 RCSIHDLCILLEGHLLCALRHDEALIAVR 293
           R S+ D  +++ GHLL  L H+EA+  +R
Sbjct: 377 RLSLGDELLVINGHLLVGLSHEEAVAILR 405

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>PRRT1_MOUSE (O35449) Proline-rich transmembrane protein 1|
          Length = 306

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 102 PPSHGQPFPPASPPSLEQALSPSNAAEQSIGRASTLPIGG 221
           PP+   P PPA  P+   A +P        G   TLP+GG
Sbjct: 126 PPAAAAPPPPAPAPT---AQAPGFVVPTHAGAVGTLPLGG 162

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>KPRS_STRCO (Q9K3U0) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 324

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = -1

Query: 296 QGHSSPINTWLLLVCSTVDAGAAPSPSNWQC*CPAYGLLGGVAGRERLLKGGRRCWWERL 117
           Q H++PIN W++     +DA    S  +     P Y    G A +++  +G       R 
Sbjct: 65  QSHTAPINKWVMEQLIMIDALKRASARSITVIVPFY----GYARQDKKHRG-------RE 113

Query: 116 PVGGRLCWDPVPAAGQRRL 60
           P+  RL  D +  AG  R+
Sbjct: 114 PISARLIADLMKTAGADRI 132

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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 26.2 bits (56), Expect(2) = 7.5
 Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
 Frame = +3

Query: 102 PPSHGQPF-----PPASPPSLEQALSPSNAAEQSIGRASTLPIGGAWSCSGIHSRANKKE 266
           PP  GQ       PPA  P  ++  SP+ A +QS  +A+ +  G      G  SR     
Sbjct: 485 PPPQGQQHLSGLGPPAGSPLPQRLPSPTAAPQQSASQATPVTQG-----QGRQSRPVAGG 539

Query: 267 PGVDWR*MPLTAMSASSCLRAQRRCPSRRIQRS 365
           PG      P     AS   + Q   P    Q S
Sbjct: 540 PGAP----PAARPPASPSPQRQAGAPQATRQAS 568



 Score = 20.8 bits (42), Expect(2) = 7.5
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = +1

Query: 13  GSXXXXXXXXXXXVGRSLRCPAAGTGSQQSLPPTG 117
           GS           +GR      AG  +QQ  PP G
Sbjct: 431 GSHSQSSSPGALTLGRQTSQQPAGPPAQQRPPPQG 465

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>VP6_AHSV3 (Q64909) VP6 protein (Minor inner core protein VP6)|
          Length = 369

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 150 QGREAMLVGTAARGREALLGSCTCGGAAEASADWASSGGGPRRL*TLA 7
           QGR  ++  ++  G E L  +  C G ++   + A  GGG RR+  LA
Sbjct: 167 QGRGGLVAKSSECGGEPLDRTGGCSGNSKTEGEEAKVGGGDRRIGGLA 214

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>CPB2_CAEBR (Q6E3F3) Cytoplasmic polyadenylation element-binding protein 2|
          Length = 566

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 229 LQAPPIGNVDALPMDCSAALLGESACSREGG-DAGGNGCPWEGGS 98
           L +PP G ++    DC  A   +   SR G  D GG G P  G S
Sbjct: 298 LSSPPFGQINPFMTDCPPA-PSDLQMSRHGSVDGGGGGFPTHGMS 341

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>RK2_SINAL (P27107) Chloroplast 50S ribosomal protein L2|
          Length = 274

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -1

Query: 188 GLLGGVAGRERLL-KGGRRCWWERLPVGGRLCWDPV--PAAGQRRLRPTGRAAAVGRGGY 18
           G +G V   ++ L + G +CW  + PV   +  +PV  P  G     P GR   V   GY
Sbjct: 191 GQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGY 250

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>RK2_LOTJA (Q9B1H9) Chloroplast 50S ribosomal protein L2|
          Length = 274

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -1

Query: 188 GLLGGVAGRERLL-KGGRRCWWERLPVGGRLCWDPV--PAAGQRRLRPTGRAAAVGRGGY 18
           G +G V   ++ L + G +CW  + PV   +  +PV  P  G     P GR   V   GY
Sbjct: 191 GQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGY 250

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>RK2_ARATH (P56791) Chloroplast 50S ribosomal protein L2|
          Length = 274

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -1

Query: 188 GLLGGVAGRERLL-KGGRRCWWERLPVGGRLCWDPV--PAAGQRRLRPTGRAAAVGRGGY 18
           G +G V   ++ L + G +CW  + PV   +  +PV  P  G     P GR   V   GY
Sbjct: 191 GQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGY 250

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>RNAS1_MESAU (P00682) Ribonuclease pancreatic (EC 3.1.27.5) (RNase 1) (RNase A)|
          Length = 124

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 374 QHS*SLYPSRRTPSLCPQARRSAHSGQGHSSPINTWLLLVCSTVDAGAAPSPSNWQC 204
           QH  S   +  +P+ C Q  +  +  QG+  P+NT++    S  D  A  S  N  C
Sbjct: 11  QHMDSTVATSSSPTYCNQMMKRRNMTQGYCKPVNTFVHE--SLADVHAVCSQENVAC 65

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>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -3

Query: 192  LWTARRRCWARAPAQGREAMLVGTAARGREALLGSCTCGGAAEASADWASSGG 34
            LW  R+   A    +G  +  V  AA G  A+L S   GG     A  A  GG
Sbjct: 1012 LWAFRKAAAAYGRGEGTASGAVYVAAAGGYAMLQSGGAGGGGMGQAGGAGRGG 1064

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>RNAS1_CRIGR (P24717) Ribonuclease pancreatic precursor (EC 3.1.27.5) (RNase 1)|
           (RNase A) (Fragment)
          Length = 130

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 374 QHS*SLYPSRRTPSLCPQARRSAHSGQGHSSPINTWLLLVCSTVDAGAAPSPSNWQC 204
           QH  S   +  +P+ C Q  +  +  QG   P+NT++    S  D  A  S  N +C
Sbjct: 17  QHMDSTVATSSSPTYCNQMMKRRNMTQGQCKPVNTFVHE--SLADVHAVCSQENVKC 71

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>RKHD1_HUMAN (Q86XN8) RING finger and KH domain-containing protein 1|
          Length = 485

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 168 WARAPAQGREAMLVGTAARGREALLGSCTCGGAAEASADWASSGGGP 28
           WA+ P QGR         RG  AL      G  +   A +A S GGP
Sbjct: 207 WAKTPNQGRRPPTATAGLRGDTAL------GAPSAPEAFYAGSRGGP 247

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>HEM6_HUMAN (P36551) Coproporphyrinogen III oxidase, mitochondrial precursor|
           (EC 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase)
           (COX)
          Length = 454

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 23/66 (34%), Positives = 29/66 (43%)
 Frame = -1

Query: 218 SNWQC*CPAYGLLGGVAGRERLLKGGRRCWWERLPVGGRLCWDPVPAAGQRRLRPTGRAA 39
           S+  C   A G  GG     +   GG R W +R    GR+C  P P AG  + R  G   
Sbjct: 9   SSGPCWLVARGGCGGPRAWSQCGGGGLRAWSQR-SAAGRVCRPPGP-AGTEQSRGLGH-G 65

Query: 38  AVGRGG 21
           +  RGG
Sbjct: 66  STSRGG 71

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>RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
           (DNA-directed RNA polymerase I 16 kDa polypeptide)
           (RPA16)
          Length = 133

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 323 EGTKKVSFEKDTKI---MNAASFTIEREDHTIGNILRMQLHRDP 445
           EG +K + E            +F +  EDHT+GN LR  + ++P
Sbjct: 20  EGERKTALEMVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNP 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,700,045
Number of Sequences: 219361
Number of extensions: 1497398
Number of successful extensions: 7732
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 6429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7647
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result