ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast41b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 prec... 30 2.3
2NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 pr... 30 2.3
3PPDK_GIALA (P51776) Pyruvate, phosphate dikinase (EC 2.7.9.1) (P... 30 3.8
4MNTH_STAES (Q8CPM6) Probable manganese transport protein mntH 29 5.0
5MNTH_STAEQ (Q5HQ64) Probable manganese transport protein mntH 29 5.0

>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch 1)|
            [Contains: Notch 1 extracellular truncation; Notch 1
            intracellular domain]
          Length = 2531

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 109  WLPRVRRGGIPGQWSLLAPGIS 174
            WLPR++ G +P Q++ L PG++
Sbjct: 2300 WLPRLQNGMVPSQYNPLRPGVT 2321



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>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch 1)|
            (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular
            truncation; Notch 1 intracellular domain]
          Length = 2531

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 109  WLPRVRRGGIPGQWSLLAPGIS 174
            WLPR++ G +P Q++ L PG++
Sbjct: 2300 WLPRLQNGMVPSQYNPLRPGVT 2321



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>PPDK_GIALA (P51776) Pyruvate, phosphate dikinase (EC 2.7.9.1) (Pyruvate,|
           orthophosphate dikinase)
          Length = 884

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 300 AEPVGRLERHVHQRVEELHQ 241
           AE + +  RH+H+RVE+LH+
Sbjct: 647 AEDMNKKHRHIHERVEDLHE 666



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>MNTH_STAES (Q8CPM6) Probable manganese transport protein mntH|
          Length = 453

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 37  QFFTTTQNLVCPQSTRTWMLLLSWWLPRVRRG 132
           Q  T+ QNL+ P   +TW+ ++SW L  V  G
Sbjct: 409 QLATSNQNLMGPFKNKTWINIISWLLIIVLSG 440



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>MNTH_STAEQ (Q5HQ64) Probable manganese transport protein mntH|
          Length = 453

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 37  QFFTTTQNLVCPQSTRTWMLLLSWWLPRVRRG 132
           Q  T+ QNL+ P   +TW+ ++SW L  V  G
Sbjct: 409 QLATSNQNLMGPFKNKTWINIISWLLIIVLSG 440


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,859,398
Number of Sequences: 219361
Number of extensions: 671890
Number of successful extensions: 2316
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2310
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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