ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast41b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
2dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
3dbj|AK073366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
4gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 58 3e-05
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 3e-05
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
8dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
9gb|AC158405.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.10
10dbj|AK107311.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
11gb|AC157775.1| Oryza sativa (japonica cultivar-group) BAC clone ... 46 0.10
12ref|XM_813167.1| Trypanosoma cruzi strain CL Brener DNA repair a... 44 0.40
13ref|NM_195386.1| Oryza sativa (japonica cultivar-group) hypothet... 42 1.6
14gb|AC013791.9| Homo sapiens chromosome 11, clone RP11-19N21, com... 42 1.6
15gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 geno... 42 1.6
16gb|AC001228.1|HSAC001228 244Kb Contig from Human Chromosome 11p1... 42 1.6
17gb|AC005950.1|AC005950 Homo sapiens Chromosome 11p15.5 PAC clone... 42 1.6
18dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.6
20gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
21gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.6
22gb|DQ176871.1| Streptomyces aureofaciens strain Tu117 lipomycin ... 40 6.2
23ref|XM_638890.1| Dictyostelium discoideum hypothetical protein (... 40 6.2
24gb|BT018634.1| Zea mays clone EL01N0504B05.d mRNA sequence 40 6.2
25ref|XM_359923.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.2
26gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 6.2
27gb|AC148397.13| Medicago truncatula clone mth2-22h4, complete se... 40 6.2
28gb|AC007688.15| Homo sapiens 12 BAC RPCI11-392P7 (Roswell Park C... 40 6.2
29gb|AC023683.4| Drosophila melanogaster X BAC RP98-29G2 (Roswell ... 40 6.2
30gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell... 40 6.2
31dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 6.2
32ref|NM_132391.1| Drosophila melanogaster CG15307-RA (CG15307), mRNA 40 6.2
33gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.2
34dbj|AB189641.1| Halorhodospira halophila nifH, nifD, nifK genes ... 40 6.2
35gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041... 40 6.2
36gb|AE004806.1| Pseudomonas aeruginosa PAO1, section 367 of 529 o... 40 6.2
37ref|XM_219944.3| PREDICTED: Rattus norvegicus F-box and WD-40 do... 40 6.2
38gb|AC037459.16| Homo sapiens chromosome 8, clone RP11-582J16, co... 40 6.2
39dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 6.2
40dbj|AK024522.1| Homo sapiens cDNA: FLJ20869 fis, clone ADKA02377 40 6.2
41ref|XM_319733.2| Anopheles gambiae str. PEST ENSANGP00000019379 ... 40 6.2
42gb|AE003450.4| Drosophila melanogaster chromosome X, section 34 ... 40 6.2
43emb|Y13918.1|PABY13918 Pseudomonas aeruginosa phage phi CTX DNA,... 40 6.2
44dbj|AB091769.1| Rattus norvegicus DMN mRNA for desmuslin, comple... 40 6.2
45gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.2
46gb|AC005331.2| Homo sapiens chromosome 19, cosmid R31341, comple... 40 6.2
47dbj|AB008550.1| Pseudomonas aeruginosa phage phi CTX, complete g... 40 6.2 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                            
Query: 222      gccgtgcgtggccatggtgctggtgcagctcttctactcgctggtggacatggcgctcaa 281
                |||||||||||  |||||| ||||||||   |||||| ||  ||||||||||||||||||
Sbjct: 15395247 gccgtgcgtggggatggtgatggtgcagtggttctacgcggcggtggacatggcgctcaa 15395188

                                                       
Query: 282      gacggcctacgggctcggcatgcgccccatcgtcttcgt 320
                | |||| |||||| | || ||||||||||||||||||||
Sbjct: 15395187 ggcggcgtacgggatggggatgcgccccatcgtcttcgt 15395149



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 391      cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgccag 449
                |||| ||||||||||||| |||  || |||||||||||||||  |||||||||||||||
Sbjct: 15395075 cgccacatggccgtcggcgccccggcgttcgccctcctcttcgccgcctccctcgccag 15395017
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>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1299_A11
          Length = 160099

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                         
Query: 222   gccgtgcgtggccatggtgctggtgcagctcttctactcgctggtggacatggcgctcaa 281
             |||||||||||  |||||| ||||||||   |||||| ||  ||||||||||||||||||
Sbjct: 44539 gccgtgcgtggggatggtgatggtgcagtggttctacgcggcggtggacatggcgctcaa 44480

                                                    
Query: 282   gacggcctacgggctcggcatgcgccccatcgtcttcgt 320
             | |||| |||||| | || ||||||||||||||||||||
Sbjct: 44479 ggcggcgtacgggatggggatgcgccccatcgtcttcgt 44441



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                        
Query: 391   cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgccag 449
             |||| ||||||||||||| |||  || |||||||||||||||  |||||||||||||||
Sbjct: 44367 cgccacatggccgtcggcgccccggcgttcgccctcctcttcgccgcctccctcgccag 44309
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>dbj|AK073366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030H08, full
           insert sequence
          Length = 1405

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                       
Query: 222 gccgtgcgtggccatggtgctggtgcagctcttctactcgctggtggacatggcgctcaa 281
           |||||||||||  |||||| ||||||||   |||||| ||  ||||||||||||||||||
Sbjct: 85  gccgtgcgtggggatggtgatggtgcagtggttctacgcggcggtggacatggcgctcaa 144

                                                  
Query: 282 gacggcctacgggctcggcatgcgccccatcgtcttcgt 320
           | |||| |||||| | || ||||||||||||||||||||
Sbjct: 145 ggcggcgtacgggatggggatgcgccccatcgtcttcgt 183



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                       
Query: 391 cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgccagc 450
           |||| ||||||||||||| |||  || |||||||||||||||  ||||||||||||||||
Sbjct: 257 cgccacatggccgtcggcgccccggcgttcgccctcctcttcgccgcctccctcgccagc 316

                   
Query: 451 gcgacggg 458
           ||||||||
Sbjct: 317 gcgacggg 324
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
              sequence
          Length = 190055

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                       
Query: 391    cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgcc 447
              |||| ||||||||||||| |||  || |||||||||||||||  |||||||||||||
Sbjct: 108358 cgccacatggccgtcggcaccccggcgttcgccctcctcttcgccgcctccctcgcc 108414
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                         
Query: 391      cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgcc 447
                |||| ||||||||||||| |||  || |||||||||||||||  |||||||||||||
Sbjct: 21415447 cgccacatggccgtcggcaccccggcgttcgccctcctcttcgccgcctccctcgcc 21415503
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                         
Query: 391      cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgcc 447
                |||| ||||||||||||| |||  || |||||||||||||||  |||||||||||||
Sbjct: 21408476 cgccacatggccgtcggcaccccggcgttcgccctcctcttcgccgcctccctcgcc 21408532
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 391      cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgcc 447
                |||| ||||| ||||||| |||  || |||||||||||||||  |||||||||||||
Sbjct: 33218653 cgccacatggtcgtcggcgccccggcgttcgccctcctcttcgccgcctccctcgcc 33218709
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>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1070A12
          Length = 148449

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 391   cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgcc 447
             |||| ||||| ||||||| |||  || |||||||||||||||  |||||||||||||
Sbjct: 11900 cgccacatggtcgtcggcgccccggcgttcgccctcctcttcgccgcctccctcgcc 11956
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>gb|AC158405.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1366F05,
              complete sequence
          Length = 171022

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 234    catggtgctggtgcagctcttct 256
              |||||||||||||||||||||||
Sbjct: 119435 catggtgctggtgcagctcttct 119457
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>dbj|AK107311.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D08, full
           insert sequence
          Length = 1370

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 234 catggtgctggtgcagctcttct 256
           |||||||||||||||||||||||
Sbjct: 182 catggtgctggtgcagctcttct 204
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>gb|AC157775.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0064O05,
             complete sequence
          Length = 28847

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 234   catggtgctggtgcagctcttct 256
             |||||||||||||||||||||||
Sbjct: 14814 catggtgctggtgcagctcttct 14792
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>ref|XM_813167.1| Trypanosoma cruzi strain CL Brener DNA repair and recombination
           protein RAD54 (Tc00.1047053508647.290) partial mRNA
          Length = 3138

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 423 cctcctcttcctcgcctccctc 444
           ||||||||||||||||||||||
Sbjct: 427 cctcctcttcctcgcctccctc 406
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>ref|NM_195386.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0041L14.13), mRNA
          Length = 207

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 233 ccatggtgctggtgcagctcttctactcg 261
           |||||||| |||||||||||||| |||||
Sbjct: 56  ccatggtgttggtgcagctcttcaactcg 84
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>gb|AC013791.9| Homo sapiens chromosome 11, clone RP11-19N21, complete sequence
          Length = 174569

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 228   cgtggccatggtgctggtgcagctc 252
             ||||||||||||||||| |||||||
Sbjct: 30648 cgtggccatggtgctggagcagctc 30624
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>gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 genomic sequence, complete
             sequence
          Length = 158742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 233   ccatggtgctggtgcagctcttctactcg 261
             |||||||| |||||||||||||| |||||
Sbjct: 55741 ccatggtgttggtgcagctcttcaactcg 55713
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>gb|AC001228.1|HSAC001228 244Kb Contig from Human Chromosome 11p15.5 spanning D11S1 through
             D11S25, complete sequence
          Length = 244254

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 228   cgtggccatggtgctggtgcagctc 252
             ||||||||||||||||| |||||||
Sbjct: 91313 cgtggccatggtgctggagcagctc 91337
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>gb|AC005950.1|AC005950 Homo sapiens Chromosome 11p15.5 PAC clone pDJ754h15 containing
              cdk-inhibitor p57/KIP2 (CDKN1C) gene, complete sequence
          Length = 137932

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 228    cgtggccatggtgctggtgcagctc 252
              ||||||||||||||||| |||||||
Sbjct: 115272 cgtggccatggtgctggagcagctc 115296
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 233     ccatggtgctggtgcagctcttctactcg 261
               |||||||| |||||||||||||| |||||
Sbjct: 6546439 ccatggtgttggtgcagctcttcaactcg 6546467
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 423    cctcctcttcctcgcctccctcgcc 447
              |||||||||||||||| ||||||||
Sbjct: 704236 cctcctcttcctcgccaccctcgcc 704212
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 233     ccatggtgctggtgcagctcttctactcg 261
               |||||||| |||||||||||||| |||||
Sbjct: 6548825 ccatggtgttggtgcagctcttcaactcg 6548853
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 423    cctcctcttcctcgcctccctcgcc 447
              |||||||||||||||| ||||||||
Sbjct: 374915 cctcctcttcctcgccaccctcgcc 374891



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 420    cgccctcctcttcctcgcctccctc 444
              ||||||||||||||||||| |||||
Sbjct: 125371 cgccctcctcttcctcgcccccctc 125347
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>gb|DQ176871.1| Streptomyces aureofaciens strain Tu117 lipomycin biosynthesis gene
            cluster, complete sequence
          Length = 66871

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 429  cttcctcgcctccctcgcca 448
            ||||||||||||||||||||
Sbjct: 1531 cttcctcgcctccctcgcca 1512
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>ref|XM_638890.1| Dictyostelium discoideum hypothetical protein (DDB0217499), partial
           mRNA
          Length = 2760

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 425 tcctcttcctcgcctccctc 444
           ||||||||||||||||||||
Sbjct: 602 tcctcttcctcgcctccctc 583
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>gb|BT018634.1| Zea mays clone EL01N0504B05.d mRNA sequence
          Length = 1580

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 419  tcgccctcctcttcctcgcc 438
            ||||||||||||||||||||
Sbjct: 1282 tcgccctcctcttcctcgcc 1263
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>ref|XM_359923.1| Magnaporthe grisea 70-15 hypothetical protein (MG04854.4) partial
           mRNA
          Length = 1206

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 tggcgctcaagacggcctac 291
           ||||||||||||||||||||
Sbjct: 239 tggcgctcaagacggcctac 258
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    cctcctcttcctcgcctccc 442
              ||||||||||||||||||||
Sbjct: 201327 cctcctcttcctcgcctccc 201308
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>gb|AC148397.13| Medicago truncatula clone mth2-22h4, complete sequence
          Length = 131213

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   cagctcttctactcgctggt 266
             ||||||||||||||||||||
Sbjct: 61447 cagctcttctactcgctggt 61466
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>gb|AC007688.15| Homo sapiens 12 BAC RPCI11-392P7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161577

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 417    cttcgccctcctcttcctcgcctccctc 444
              ||||||||||||||||||  ||||||||
Sbjct: 106875 cttcgccctcctcttcctttcctccctc 106848
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>gb|AC023683.4| Drosophila melanogaster X BAC RP98-29G2 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 160194

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    gcgtggccatggtgctggtg 246
              ||||||||||||||||||||
Sbjct: 155291 gcgtggccatggtgctggtg 155310
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>gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 169124

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    gcgtggccatggtgctggtg 246
              ||||||||||||||||||||
Sbjct: 157165 gcgtggccatggtgctggtg 157146
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 421     gccctcctcttcctcgcctccctc 444
               ||||||||||||||| ||||||||
Sbjct: 2920641 gccctcctcttcctctcctccctc 2920664
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>ref|NM_132391.1| Drosophila melanogaster CG15307-RA (CG15307), mRNA
          Length = 612

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gcgtggccatggtgctggtg 246
           ||||||||||||||||||||
Sbjct: 487 gcgtggccatggtgctggtg 468
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      tcgccgcatcgtcaccgccg 28
              ||||||||||||||||||||
Sbjct: 259532 tcgccgcatcgtcaccgccg 259513
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>dbj|AB189641.1| Halorhodospira halophila nifH, nifD, nifK genes for Fe protein of
           nitrogenase, MoFe protein of nitrogenase alpha-subunit,
           MoFe protein of nitrogenase beta-subunit, complete and
           partial cds
          Length = 2957

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 46  accaccacgcagaacctggt 65
           ||||||||||||||||||||
Sbjct: 261 accaccacgcagaacctggt 280
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>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4,
             complete sequence
          Length = 333321

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   tcctcttcctcgcctccctc 444
             ||||||||||||||||||||
Sbjct: 60835 tcctcttcctcgcctccctc 60816
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>gb|AE004806.1| Pseudomonas aeruginosa PAO1, section 367 of 529 of the complete
            genome
          Length = 10506

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   tcaccgccggcagccgccaa 39
            ||||||||||||||||||||
Sbjct: 5426 tcaccgccggcagccgccaa 5445
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>ref|XM_219944.3| PREDICTED: Rattus norvegicus F-box and WD-40 domain protein 4
           (predicted) (Fbxw4_predicted), mRNA
          Length = 2376

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 428 tcttcctcgcctccctcgcc 447
           ||||||||||||||||||||
Sbjct: 470 tcttcctcgcctccctcgcc 451
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>gb|AC037459.16| Homo sapiens chromosome 8, clone RP11-582J16, complete sequence
          Length = 174888

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 419    tcgccctcctcttcctcgcc 438
              ||||||||||||||||||||
Sbjct: 120062 tcgccctcctcttcctcgcc 120081
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    tggccatggtgctggtgcag 249
              ||||||||||||||||||||
Sbjct: 674771 tggccatggtgctggtgcag 674752
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>dbj|AK024522.1| Homo sapiens cDNA: FLJ20869 fis, clone ADKA02377
          Length = 2037

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 417 cttcgccctcctcttcctcgcctccctc 444
           ||||||||||||||||||  ||||||||
Sbjct: 775 cttcgccctcctcttcctttcctccctc 802
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>ref|XM_319733.2| Anopheles gambiae str. PEST ENSANGP00000019379 (ENSANGG00000016890),
            partial mRNA
          Length = 4785

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 417  cttcgccctcctcttcctcg 436
            ||||||||||||||||||||
Sbjct: 2017 cttcgccctcctcttcctcg 1998
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>gb|AE003450.4| Drosophila melanogaster chromosome X, section 34 of 74 of the complete
             sequence
          Length = 232514

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   gcgtggccatggtgctggtg 246
             ||||||||||||||||||||
Sbjct: 82026 gcgtggccatggtgctggtg 82007
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>emb|Y13918.1|PABY13918 Pseudomonas aeruginosa phage phi CTX DNA, complete genome
          Length = 35559

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    gcatcgtcaccgccggcagc 33
             ||||||||||||||||||||
Sbjct: 14758 gcatcgtcaccgccggcagc 14777
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>dbj|AB091769.1| Rattus norvegicus DMN mRNA for desmuslin, complete cds
          Length = 6447

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 416  ccttcgccctcctcttcctc 435
            ||||||||||||||||||||
Sbjct: 2501 ccttcgccctcctcttcctc 2482
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 9       tcgccgcatcgtcaccgccg 28
               ||||||||||||||||||||
Sbjct: 2972597 tcgccgcatcgtcaccgccg 2972578
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>gb|AC005331.2| Homo sapiens chromosome 19, cosmid R31341, complete sequence
          Length = 35581

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 425   tcctcttcctcgcctccctcgcca 448
             ||||||||||||||||||| ||||
Sbjct: 27613 tcctcttcctcgcctcccttgcca 27590
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>dbj|AB008550.1| Pseudomonas aeruginosa phage phi CTX, complete genome sequence
          Length = 35580

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    gcatcgtcaccgccggcagc 33
             ||||||||||||||||||||
Sbjct: 14758 gcatcgtcaccgccggcagc 14777


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,056,070
Number of Sequences: 3902068
Number of extensions: 2056070
Number of successful extensions: 55402
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54835
Number of HSP's gapped (non-prelim): 567
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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