ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast41b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 48 0.010
2gb|AE004506.1| Pseudomonas aeruginosa PAO1, section 67 of 529 of... 46 0.040
3ref|NM_187402.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.63
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.63
5dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic D... 42 0.63
6dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.63
7emb|AJ334915.1|HSA334915 Homo sapiens genomic sequence surroundi... 42 0.63
8gb|CP000097.1| Synechococcus sp. CC9902, complete genome 40 2.5
9ref|XM_474188.1| Oryza sativa (japonica cultivar-group), predic... 40 2.5
10gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com... 40 2.5
11ref|XM_746366.1| Aspergillus fumigatus Af293 MAP kinase MpkA (Af... 40 2.5
12gb|AY056021.1| Sirodotia suecica large subunit ribosomal RNA gen... 40 2.5
13emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4,... 40 2.5
14gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 2.5
15gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence 40 2.5
16dbj|AK040967.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 2.5
17dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
18gb|AC154535.2| Mus musculus BAC clone RP23-447M9 from chromosome... 40 2.5
19dbj|AK103392.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.5
20dbj|AK071255.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.5
21dbj|AK068928.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.5
22emb|AJ628018.2| Streptomyces sp. SCC 2136 deoxysugar biosyntheti... 40 2.5
23gb|AC003688.1|AC003688 Homo sapiens chromosome 17, clone hRPC.4_... 40 2.5
24emb|AL845495.9| Mouse DNA sequence from clone RP23-234E8 on chro... 40 2.5
25ref|XM_511184.1| PREDICTED: Pan troglodytes similar to voltage d... 38 9.8
26gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 38 9.8
27gb|AF223561.1|AH009202S2 Homo sapiens low-voltage-activated calc... 38 9.8
28ref|NM_001005407.1| Homo sapiens calcium channel, voltage-depend... 38 9.8
29ref|NM_021098.2| Homo sapiens calcium channel, voltage-dependent... 38 9.8
30ref|NM_018988.1| Homo sapiens glucose-fructose oxidoreductase do... 38 9.8
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.8
32gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.8
33gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.8
34ref|XM_979594.1| PREDICTED: Mus musculus DMRT-like family B with... 38 9.8
35ref|XM_205469.6| PREDICTED: Mus musculus DMRT-like family B with... 38 9.8
36ref|XM_916034.2| PREDICTED: Mus musculus DMRT-like family B with... 38 9.8
37emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 38 9.8
38gb|AF542048.1| Mus musculus doublesex and mab-3 related transcri... 38 9.8
39gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare... 38 9.8
40gb|AC090445.3| Canis familiaris clone RP81-55A4, complete sequence 38 9.8
41emb|AL583828.4| Human DNA sequence from clone RP11-501I19 on chr... 38 9.8
42emb|AJ862840.1| Streptomyces griseus subsp. griseus streptomycin... 38 9.8
43gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 38 9.8
44emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 38 9.8
45emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete ... 38 9.8
46gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 38 9.8
47gb|AE006466.1| Homo sapiens 16p13.3 sequence section 5 of 8 38 9.8
48gb|AC120498.2| Homo sapiens chromosome 16 clone RP11-616M22, com... 38 9.8
49gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, comple... 38 9.8
50gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, comple... 38 9.8
51gb|AE011948.1| Xanthomonas axonopodis pv. citri str. 306, secti... 38 9.8
52gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare str... 38 9.8
53gb|AC098786.2| Homo sapiens chromosome 19 clone LLNLR-258C11, co... 38 9.8
54gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 38 9.8
55gb|AF051946.3|AF051946 Homo sapiens T-type calcium channel alpha... 38 9.8
56gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 38 9.8
57dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
58dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
59dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 9.8
60dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 38 9.8
61dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 38 9.8
62gb|AC010305.3|AC010305 Homo sapiens chromosome 16 clone CTB-45A8... 38 9.8
63dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 38 9.8
64emb|AJ242827.1|STE242827 Streptomyces tendae afp gene and ORF2 (... 38 9.8
65dbj|AK000337.1| Homo sapiens cDNA FLJ20330 fis, clone HEP10296 38 9.8
66emb|AJ326764.1|HSA326764 Homo sapiens genomic sequence surroundi... 38 9.8
67ref|NM_211803.1| Eremothecium gossypii AGR076Cp (AGR076C), mRNA 38 9.8
68emb|AL031703.12|HS302G6 Human DNA sequence from clone LA16c-302G... 38 9.8
69gb|AF073931.1|AF073931 Homo sapiens low-voltage activated calciu... 38 9.8
70gb|AC115771.13| Mus musculus chromosome 19, clone RP23-116D4, co... 38 9.8
71gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 38 9.8
72gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.8
73emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa... 38 9.8
74emb|AJ131017.1|MMU131017 Mus musculus SCL gene locus 38 9.8
75emb|AL627259.8| Mouse DNA sequence from clone RP23-399H3 on chro... 38 9.8
76emb|AL670035.15| Mouse DNA sequence from clone RP23-295C20 on ch... 38 9.8
77emb|AJ297131.1|MMAJ2971 Mus musculus SIL, MAP_17, CYP_a, SCL & C... 38 9.8
78emb|AJ420779.1|HSA420779 Homo sapiens mRNA for calcium channel, ... 38 9.8 
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 63     tcggcctgcggctgcgcggcagcggcgg 90
              |||||||||||||||| |||||||||||
Sbjct: 282657 tcggcctgcggctgcgaggcagcggcgg 282684
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>gb|AE004506.1| Pseudomonas aeruginosa PAO1, section 67 of 529 of the complete genome
          Length = 10007

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 76   gcgcggcagcggcggccaccgcc 98
            |||||||||||||||||||||||
Sbjct: 3684 gcgcggcagcggcggccaccgcc 3662
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>ref|NM_187402.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3333

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  ccctcggcctgcggctgcgcg 80
           |||||||||||||||||||||
Sbjct: 328 ccctcggcctgcggctgcgcg 348
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 60       ccctcggcctgcggctgcgcg 80
                |||||||||||||||||||||
Sbjct: 19897149 ccctcggcctgcggctgcgcg 19897129
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>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0036M16
          Length = 158880

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 60    ccctcggcctgcggctgcgcg 80
             |||||||||||||||||||||
Sbjct: 61799 ccctcggcctgcggctgcgcg 61779
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>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0650C03
          Length = 144337

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 60     ccctcggcctgcggctgcgcg 80
              |||||||||||||||||||||
Sbjct: 137308 ccctcggcctgcggctgcgcg 137288
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>emb|AJ334915.1|HSA334915 Homo sapiens genomic sequence surrounding NotI site, clone
          NB6-837R
          Length = 778

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 74 ctgcgcggcagcggcggccac 94
          |||||||||||||||||||||
Sbjct: 57 ctgcgcggcagcggcggccac 77
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>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 62      ctcggcctgcggctgcgcggcagc 85
               |||||||||||| |||||||||||
Sbjct: 1036472 ctcggcctgcggatgcgcggcagc 1036449
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>ref|XM_474188.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1035

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 68 ctgcggctgcgcggcagcggcggc 91
          ||||||||||||||| ||||||||
Sbjct: 75 ctgcggctgcgcggcggcggcggc 52
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>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    ggcagcggcggccaccgcct 99
             ||||||||||||||||||||
Sbjct: 17215 ggcagcggcggccaccgcct 17234
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>ref|XM_746366.1| Aspergillus fumigatus Af293 MAP kinase MpkA (Afu4g13720) partial mRNA
          Length = 1275

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   gctgcgcggcagcggcggcc 92
            ||||||||||||||||||||
Sbjct: 1114 gctgcgcggcagcggcggcc 1095
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>gb|AY056021.1| Sirodotia suecica large subunit ribosomal RNA gene, partial
           sequence
          Length = 2680

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ttcgcacgcaccccagccac 140
           ||||||||||||||||||||
Sbjct: 444 ttcgcacgcaccccagccac 425
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>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23,
             complete sequence
          Length = 149353

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    ctgcggctgcgcggcagcggcggc 91
             ||||||||||||||| ||||||||
Sbjct: 22704 ctgcggctgcgcggcggcggcggc 22681
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 73      gctgcgcggcagcggcggcc 92
               ||||||||||||||||||||
Sbjct: 3285488 gctgcgcggcagcggcggcc 3285469
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>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence
          Length = 181577

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    ctgcggctgcgcggcagcggcggc 91
             ||||||||||||||| ||||||||
Sbjct: 22898 ctgcggctgcgcggcggcggcggc 22875
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>dbj|AK040967.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530052F04
            product:unclassifiable, full insert sequence
          Length = 2691

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  ggagcagggaaggagggggg 192
            ||||||||||||||||||||
Sbjct: 1807 ggagcagggaaggagggggg 1788
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 68       ctgcggctgcgcggcagcggcggc 91
                ||||||||||||||| ||||||||
Sbjct: 33591644 ctgcggctgcgcggcggcggcggc 33591621
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>gb|AC154535.2| Mus musculus BAC clone RP23-447M9 from chromosome 13, complete sequence
          Length = 179176

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    ggagcagggaaggagggggg 192
              ||||||||||||||||||||
Sbjct: 151456 ggagcagggaaggagggggg 151475
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>dbj|AK103392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127M05, full
           insert sequence
          Length = 1487

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 170 ccaggagcagggaaggaggggggcgcgt 197
           ||||| ||||||||||||| ||||||||
Sbjct: 196 ccaggggcagggaaggaggcgggcgcgt 223
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>dbj|AK071255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086C22, full
           insert sequence
          Length = 1660

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 68  ctgcggctgcgcggcagcggcggc 91
           ||||||||||||||| ||||||||
Sbjct: 297 ctgcggctgcgcggcggcggcggc 274
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>dbj|AK068928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170O13, full
           insert sequence
          Length = 3699

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 68  ctgcggctgcgcggcagcggcggc 91
           ||||||||||||||| ||||||||
Sbjct: 367 ctgcggctgcgcggcggcggcggc 344
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>emb|AJ628018.2| Streptomyces sp. SCC 2136 deoxysugar biosynthetic gene cluster
          Length = 77550

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 69    tgcggctgcgcggcagcggcggccaccg 96
             |||||||||||||||||| |||| ||||
Sbjct: 70660 tgcggctgcgcggcagcgacggcaaccg 70633
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>gb|AC003688.1|AC003688 Homo sapiens chromosome 17, clone hRPC.4_G_17, complete sequence
          Length = 98117

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   aggagcagggaaggaggggg 191
             ||||||||||||||||||||
Sbjct: 54206 aggagcagggaaggaggggg 54225
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>emb|AL845495.9| Mouse DNA sequence from clone RP23-234E8 on chromosome 2, complete
              sequence
          Length = 201479

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    ggagcagggaaggagggggg 192
              ||||||||||||||||||||
Sbjct: 103605 ggagcagggaaggagggggg 103586
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>ref|XM_511184.1| PREDICTED: Pan troglodytes similar to voltage dependent t-type
           calcium channel alpha-1H subunit (LOC454332), mRNA
          Length = 504

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 60  ccctcggcctgcggctgcg 78
           |||||||||||||||||||
Sbjct: 233 ccctcggcctgcggctgcg 215
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 68      ctgcggctgcgcggcagcg 86
               |||||||||||||||||||
Sbjct: 3475478 ctgcggctgcgcggcagcg 3475496
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>gb|AF223561.1|AH009202S2 Homo sapiens low-voltage-activated calcium channel alpha13.2
          subunit (CACNA1H) gene, exons 7, 8, and partial cds
          Length = 446

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 60 ccctcggcctgcggctgcg 78
          |||||||||||||||||||
Sbjct: 95 ccctcggcctgcggctgcg 77
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>ref|NM_001005407.1| Homo sapiens calcium channel, voltage-dependent, alpha 1H subunit
            (CACNA1H), transcript variant 2, mRNA
          Length = 8079

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 60   ccctcggcctgcggctgcg 78
            |||||||||||||||||||
Sbjct: 1234 ccctcggcctgcggctgcg 1216
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>ref|NM_021098.2| Homo sapiens calcium channel, voltage-dependent, alpha 1H subunit
            (CACNA1H), transcript variant 1, mRNA
          Length = 8097

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 60   ccctcggcctgcggctgcg 78
            |||||||||||||||||||
Sbjct: 1234 ccctcggcctgcggctgcg 1216
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>ref|NM_018988.1| Homo sapiens glucose-fructose oxidoreductase domain containing 1
          (GFOD1), mRNA
          Length = 3033

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 76 gcgcggcagcggcggccac 94
          |||||||||||||||||||
Sbjct: 60 gcgcggcagcggcggccac 42
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 171     caggagcagggaaggaggggggcgcgt 197
               |||| ||||||||||||| ||||||||
Sbjct: 5254812 caggggcagggaaggaggcgggcgcgt 5254786
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>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 76     gcgcggcagcggcggccac 94
              |||||||||||||||||||
Sbjct: 149688 gcgcggcagcggcggccac 149706
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>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0068E24, complete sequence
          Length = 141492

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 76    gcgcggcagcggcggccac 94
             |||||||||||||||||||
Sbjct: 42478 gcgcggcagcggcggccac 42496
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>ref|XM_979594.1| PREDICTED: Mus musculus DMRT-like family B with proline-rich
           C-terminal, 1 (Dmrtb1), mRNA
          Length = 2000

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 81  gcagcggcggccaccgcct 99
           |||||||||||||||||||
Sbjct: 439 gcagcggcggccaccgcct 457
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>ref|XM_205469.6| PREDICTED: Mus musculus DMRT-like family B with proline-rich
           C-terminal, 1 (Dmrtb1), mRNA
          Length = 2000

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 81  gcagcggcggccaccgcct 99
           |||||||||||||||||||
Sbjct: 439 gcagcggcggccaccgcct 457
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>ref|XM_916034.2| PREDICTED: Mus musculus DMRT-like family B with proline-rich
           C-terminal, 1 (Dmrtb1), mRNA
          Length = 2000

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 81  gcagcggcggccaccgcct 99
           |||||||||||||||||||
Sbjct: 439 gcagcggcggccaccgcct 457
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 81      gcagcggcggccaccgcct 99
               |||||||||||||||||||
Sbjct: 3628912 gcagcggcggccaccgcct 3628894



 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 64      cggcctgcggctgcgcggc 82
               |||||||||||||||||||
Sbjct: 2388811 cggcctgcggctgcgcggc 2388793
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>gb|AF542048.1| Mus musculus doublesex and mab-3 related transcription factor 6
           (Dmrt6) mRNA, partial cds
          Length = 771

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 81  gcagcggcggccaccgcct 99
           |||||||||||||||||||
Sbjct: 229 gcagcggcggccaccgcct 247
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>gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare strain chromosome 3
             clone OSJNBa0021H20, complete sequence
          Length = 133079

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 171   caggagcagggaaggaggggggcgcgt 197
             |||| ||||||||||||| ||||||||
Sbjct: 78214 caggggcagggaaggaggcgggcgcgt 78188
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>gb|AC090445.3| Canis familiaris clone RP81-55A4, complete sequence
          Length = 163762

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 176   gcagggaaggaggggggcg 194
             |||||||||||||||||||
Sbjct: 45005 gcagggaaggaggggggcg 45023
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>emb|AL583828.4| Human DNA sequence from clone RP11-501I19 on chromosome 6 Contains a
             novel gene (ortholog of human ADG-90), the 5' end of a
             novel gene (FLJ20330), a novel gene, a  ribosomal protein
             s4x (Rps4x) pseudogene and three CpG islands, complete
             sequence
          Length = 124659

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 76    gcgcggcagcggcggccac 94
             |||||||||||||||||||
Sbjct: 43186 gcgcggcagcggcggccac 43204
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>emb|AJ862840.1| Streptomyces griseus subsp. griseus streptomycin gene cluster, strain
            DSM 40236
          Length = 90600

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 73   gctgcgcggcagcggcggc 91
            |||||||||||||||||||
Sbjct: 8915 gctgcgcggcagcggcggc 8897
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 54     ccaaaaccctcggcctgcggctg 76
              |||||||||||||||||| ||||
Sbjct: 380417 ccaaaaccctcggcctgcagctg 380439
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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 60    ccctcggcctgcggctgcgcggc 82
             |||||||||||| ||||||||||
Sbjct: 56392 ccctcggcctgctgctgcgcggc 56370
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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 73     gctgcgcggcagcggcggc 91
              |||||||||||||||||||
Sbjct: 163630 gctgcgcggcagcggcggc 163648
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 74      ctgcgcggcagcggcggcc 92
               |||||||||||||||||||
Sbjct: 4057462 ctgcgcggcagcggcggcc 4057444
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>gb|AE006466.1| Homo sapiens 16p13.3 sequence section 5 of 8
          Length = 265786

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 60     ccctcggcctgcggctgcg 78
              |||||||||||||||||||
Sbjct: 136085 ccctcggcctgcggctgcg 136067
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>gb|AC120498.2| Homo sapiens chromosome 16 clone RP11-616M22, complete sequence
          Length = 195680

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 60    ccctcggcctgcggctgcg 78
             |||||||||||||||||||
Sbjct: 79366 ccctcggcctgcggctgcg 79348
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>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence
          Length = 168794

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                        
Query: 66    gcctgcggctgcg-cggcagcggcggc 91
             ||||||||||||| |||||||||||||
Sbjct: 31082 gcctgcggctgcgacggcagcggcggc 31108
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>gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, complete sequence
          Length = 118183

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                        
Query: 66    gcctgcggctgcg-cggcagcggcggc 91
             ||||||||||||| |||||||||||||
Sbjct: 91064 gcctgcggctgcgacggcagcggcggc 91090
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>gb|AE011948.1| Xanthomonas axonopodis pv. citri str. 306,  section 326 of 469 of the
            complete genome
          Length = 10299

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 81   gcagcggcggccaccgcct 99
            |||||||||||||||||||
Sbjct: 1227 gcagcggcggccaccgcct 1209
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>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0091J11, from chromosome 3, complete sequence
          Length = 181163

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 171  caggagcagggaaggaggggggcgcgt 197
            |||| ||||||||||||| ||||||||
Sbjct: 1706 caggggcagggaaggaggcgggcgcgt 1732
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>gb|AC098786.2| Homo sapiens chromosome 19 clone LLNLR-258C11, complete sequence
          Length = 6722

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 175  agcagggaaggaggggggc 193
            |||||||||||||||||||
Sbjct: 2181 agcagggaaggaggggggc 2163
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>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
              complete sequence
          Length = 1476513

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     tggcggcgtcgctctccaa 57
              |||||||||||||||||||
Sbjct: 872405 tggcggcgtcgctctccaa 872387
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>gb|AF051946.3|AF051946 Homo sapiens T-type calcium channel alpha 1H subunit (CACNA1H) mRNA,
            complete cds
          Length = 7762

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 60   ccctcggcctgcggctgcg 78
            |||||||||||||||||||
Sbjct: 1065 ccctcggcctgcggctgcg 1047
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 62      ctcggcctgcggctgcgcggcag 84
               ||||||| |||||||||||||||
Sbjct: 2226201 ctcggccagcggctgcgcggcag 2226223
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 76       gcgcggcagcggcggccac 94
                |||||||||||||||||||
Sbjct: 22889971 gcgcggcagcggcggccac 22889989



 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 76      gcgcggcagcggcggccaccgcc 98
               ||||||| |||||||||||||||
Sbjct: 2207821 gcgcggcggcggcggccaccgcc 2207799
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 171     caggagcagggaaggaggggggcgcgt 197
               |||| ||||||||||||| ||||||||
Sbjct: 5254027 caggggcagggaaggaggcgggcgcgt 5254001
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 71      cggctgcgcggcagcggcggccaccgc 97
               |||||||||||||||| |||| |||||
Sbjct: 2149642 cggctgcgcggcagcgacggcaaccgc 2149668
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 73     gctgcgcggcagcggcggc 91
              |||||||||||||||||||
Sbjct: 422718 gctgcgcggcagcggcggc 422700
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 73      gctgcgcggcagcggcggc 91
               |||||||||||||||||||
Sbjct: 6133791 gctgcgcggcagcggcggc 6133809
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>gb|AC010305.3|AC010305 Homo sapiens chromosome 16 clone CTB-45A8, complete sequence
          Length = 121575

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    gcgcggcagcggcggccac 94
             |||||||||||||||||||
Sbjct: 79331 gcgcggcagcggcggccac 79313
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 64      cggcctgcggctgcgcggc 82
               |||||||||||||||||||
Sbjct: 5971646 cggcctgcggctgcgcggc 5971664
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>emb|AJ242827.1|STE242827 Streptomyces tendae afp gene and ORF2 (partial), strain Tue901/8c
          Length = 2082

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 73   gctgcgcggcagcggcggc 91
            |||||||||||||||||||
Sbjct: 1581 gctgcgcggcagcggcggc 1599
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>dbj|AK000337.1| Homo sapiens cDNA FLJ20330 fis, clone HEP10296
          Length = 3033

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 76 gcgcggcagcggcggccac 94
          |||||||||||||||||||
Sbjct: 60 gcgcggcagcggcggccac 42
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>emb|AJ326764.1|HSA326764 Homo sapiens genomic sequence surrounding NotI site, clone
          NR5-IL12C
          Length = 721

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 76 gcgcggcagcggcggccac 94
          |||||||||||||||||||
Sbjct: 66 gcgcggcagcggcggccac 84
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>ref|NM_211803.1| Eremothecium gossypii AGR076Cp (AGR076C), mRNA
          Length = 2061

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 39   tggcggcgtcgctctccaa 57
            |||||||||||||||||||
Sbjct: 1226 tggcggcgtcgctctccaa 1244
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>emb|AL031703.12|HS302G6 Human DNA sequence from clone LA16c-302G6 on chromosome 16 Contains
             part of the CACNA1H  (calcium channel, voltage-dependent,
             alpha 1H subunit) gene, ESTs, GSSs and CpG islands,
             complete sequence
          Length = 35098

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 60    ccctcggcctgcggctgcg 78
             |||||||||||||||||||
Sbjct: 30487 ccctcggcctgcggctgcg 30469
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>gb|AF073931.1|AF073931 Homo sapiens low-voltage activated calcium channel alpha 1H mRNA,
            complete cds
          Length = 7898

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 60   ccctcggcctgcggctgcg 78
            |||||||||||||||||||
Sbjct: 1234 ccctcggcctgcggctgcg 1216
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>gb|AC115771.13| Mus musculus chromosome 19, clone RP23-116D4, complete sequence
          Length = 209515

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 172    aggagcagggaaggagggg 190
              |||||||||||||||||||
Sbjct: 163289 aggagcagggaaggagggg 163271
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 71      cggctgcgcggcagcggcg 89
               |||||||||||||||||||
Sbjct: 1035018 cggctgcgcggcagcggcg 1035000
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 76       gcgcggcagcggcggccac 94
                |||||||||||||||||||
Sbjct: 23199881 gcgcggcagcggcggccac 23199899



 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 76      gcgcggcagcggcggccaccgcc 98
               ||||||| |||||||||||||||
Sbjct: 2215602 gcgcggcggcggcggccaccgcc 2215580
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>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 125593

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 76     gcgcggcagcggcggccaccgcc 98
              ||||||| |||||||||||||||
Sbjct: 104515 gcgcggcggcggcggccaccgcc 104493
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>emb|AJ131017.1|MMU131017 Mus musculus SCL gene locus
          Length = 86380

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 175   agcagggaaggaggggggc 193
             |||||||||||||||||||
Sbjct: 79381 agcagggaaggaggggggc 79399
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>emb|AL627259.8| Mouse DNA sequence from clone RP23-399H3 on chromosome 4, complete
              sequence
          Length = 176063

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     gcagcggcggccaccgcct 99
              |||||||||||||||||||
Sbjct: 156566 gcagcggcggccaccgcct 156548
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>emb|AL670035.15| Mouse DNA sequence from clone RP23-295C20 on chromosome 4, complete
              sequence
          Length = 201142

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 175    agcagggaaggaggggggc 193
              |||||||||||||||||||
Sbjct: 184785 agcagggaaggaggggggc 184803
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>emb|AJ297131.1|MMAJ2971 Mus musculus SIL, MAP_17, CYP_a, SCL & CYP_b genes
          Length = 234411

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 175   agcagggaaggaggggggc 193
             |||||||||||||||||||
Sbjct: 79400 agcagggaaggaggggggc 79418
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>emb|AJ420779.1|HSA420779 Homo sapiens mRNA for calcium channel, voltage-dependent, T type,
           alpha 1Hb subunit (CACNA1HB gene)
          Length = 7044

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 60  ccctcggcctgcggctgcg 78
           |||||||||||||||||||
Sbjct: 986 ccctcggcctgcggctgcg 968


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,287,722
Number of Sequences: 3902068
Number of extensions: 1287722
Number of successful extensions: 116712
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 114107
Number of HSP's gapped (non-prelim): 2636
length of query: 197
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 175
effective length of database: 17,147,199,772
effective search space: 3000759960100
effective search space used: 3000759960100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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