ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast41a01 |
|---|---|
| Clone Library Name | barley_pub |
>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) Length = 389 Score = 186 bits (473), Expect = 2e-47 Identities = 95/110 (86%), Positives = 104/110 (94%) Frame = +3 Query: 114 SHPDVDDLSKVDIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKL 293 SHPDVDDL+KVD+R+DVL+AVKSDDMA L+ESL A GVLE DAALLAEMR RI+EEIRKL Sbjct: 25 SHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLETDAALLAEMRGRIEEEIRKL 84 Query: 294 DENIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAI 443 DE IADAEENLGESEVREAHLAKSLYF++VGEKEKALEQLKVTEGKTVA+ Sbjct: 85 DEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTEGKTVAV 134
>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6| Length = 387 Score = 148 bits (373), Expect = 7e-36 Identities = 71/110 (64%), Positives = 93/110 (84%) Frame = +3 Query: 114 SHPDVDDLSKVDIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKL 293 +HPDV D+ KV ++S+VL ++S MAPL+E+L A+ VL+ D +LL MRA +EE++KL Sbjct: 23 THPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDLDQSLLESMRAANEEELKKL 82 Query: 294 DENIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAI 443 DE IADAEENLGESEVREAHLAK+LYF+++ +KEKALEQLK+TEGKTVA+ Sbjct: 83 DEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLKLTEGKTVAV 132
>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) Length = 389 Score = 87.8 bits (216), Expect = 1e-17 Identities = 41/98 (41%), Positives = 71/98 (72%) Frame = +3 Query: 150 IRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKLDENIADAEENLG 329 +R ++++AV+ ++MAP +E+L + + D LL++M+ +EE+++LDE + DAE+NLG Sbjct: 37 VREELMAAVRENNMAPYYEALCKSLDWQMDVDLLSKMKKANEEELKRLDEELEDAEKNLG 96 Query: 330 ESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAI 443 ESE+R+A +AK+ Y ++G+KE AL + T KTVA+ Sbjct: 97 ESEIRDAMMAKAEYLCQIGDKEGALTAFRKTYDKTVAL 134
>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) (Proteasome regulatory particle subunit p44S10) (Phosphonoformate immuno-associated protein 4) (Breast cancer-associated protein SGA-113M) Length = 389 Score = 85.5 bits (210), Expect = 5e-17 Identities = 40/98 (40%), Positives = 70/98 (71%) Frame = +3 Query: 150 IRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKLDENIADAEENLG 329 +R ++++AV+ ++MAP +E+L + + D LL +M+ ++E+++LDE + DAE+NLG Sbjct: 37 VRDELMAAVRDNNMAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLG 96 Query: 330 ESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAI 443 ESE+R+A +AK+ Y ++G+KE AL + T KTVA+ Sbjct: 97 ESEIRDAMMAKAEYLCRIGDKEGALTAFRKTYDKTVAL 134
>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit rpn-7) Length = 410 Score = 75.5 bits (184), Expect = 6e-14 Identities = 41/110 (37%), Positives = 63/110 (57%) Frame = +3 Query: 114 SHPDVDDLSKVDIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKL 293 +HP+VD K + +K DMAP +E + A + DA LA M+A ++I ++ Sbjct: 39 NHPEVDSSVKEAKLEKLQETIKEFDMAPFYELVCADFKIVVDATQLAAMKAANQKKIDEI 98 Query: 294 DENIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAI 443 + DAE+NLGESEVR+ L K Y+ ++G+K+ AL+ T KTV + Sbjct: 99 TAEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYEKTVGM 148
>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (Rpn7 protein) Length = 389 Score = 71.6 bits (174), Expect = 8e-13 Identities = 38/98 (38%), Positives = 61/98 (62%) Frame = +3 Query: 150 IRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKLDENIADAEENLG 329 +++ +L A+++++MAP +E + + D LLA M+ E+ +LD I DAE+NLG Sbjct: 37 LKAKLLEAIRTENMAPWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNLG 96 Query: 330 ESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAI 443 E EVREA+L KS Y ++G+K A + T KTV++ Sbjct: 97 EMEVREANLKKSEYLCRIGDKAAAETAFRKTYEKTVSL 134
>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7| Length = 409 Score = 46.2 bits (108), Expect = 4e-05 Identities = 24/86 (27%), Positives = 51/86 (59%), Gaps = 4/86 (4%) Frame = +3 Query: 162 VLSAVKSDDMAPLFESLA----ATGVLEPDAALLAEMRARIDEEIRKLDENIADAEENLG 329 + SA++ D+APL++ L+ + ++ D+ L M + +E++ + D+ I DA+E G Sbjct: 48 LFSAIRDHDLAPLYKYLSENPKTSASIDFDSNFLNSMIKKNEEKLAEFDKAIEDAQELNG 107 Query: 330 ESEVREAHLAKSLYFVKVGEKEKALE 407 E E+ EA K+ Y+ + ++E+ ++ Sbjct: 108 EHEILEAMKNKADYYTNICDRERGVQ 133
>MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle| myosin heavy chain IIc) (NMHC II-C) Length = 1995 Score = 38.1 bits (87), Expect = 0.010 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Frame = +3 Query: 204 ESLAATGVLEPDAALLAEMRARIDEEIRKLDENIADAEENLGESEVR--EAHLAKSLYFV 377 +S G L+ A L E RAR+ E++R E A+AEE G R E L S Sbjct: 887 QSAREVGELQGRVAQLEEERARLAEQLRAEAELCAEAEETRGRLAARKQELELVVSELEA 946 Query: 378 KVGEKEKALEQLKVTEGK 431 +VGE+E+ Q++ TE K Sbjct: 947 RVGEEEECSRQMQ-TEKK 963
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 36.6 bits (83), Expect = 0.028 Identities = 31/130 (23%), Positives = 43/130 (33%), Gaps = 6/130 (4%) Frame = -2 Query: 439 ATVFPSVTLSCSSAFSFSPTFTKYKDLARWASRTSLSPKFXXXXXXXXXXXXXXXXXXXX 260 A++ VT + SS S +PT T + S TS SP Sbjct: 163 ASIISPVTSTLSSTTSSNPTTTSLSSTSTSPSSTSTSPSSTSTSSSSTSTSSSSTSTSSS 222 Query: 259 XXXXXXXXXXXXXXXXSDSNSGAMSSDLTAESTSERMST------LERSSTSGWESRKSL 98 S S+S +S + ++S ST SSTS S KS Sbjct: 223 STSTSPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKST 282 Query: 97 WASNRCFSCF 68 AS+ S + Sbjct: 283 SASSTSTSSY 292
>RAD50_PYRKO (Q5JHN1) DNA double-strand break repair rad50 ATPase| Length = 883 Score = 34.3 bits (77), Expect = 0.14 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Frame = +3 Query: 126 VDDLSKVDIRSDVLSAVKSD---DMAPLFESLAATGVLEPDAALLAEMRARI---DEEIR 287 +D+LSK + R L K ++ L E L A + A L ++ R+ +EEI Sbjct: 330 IDELSKKEARVKELLKEKEGLQKELGALEEDLKAYQRAKELMANLERLKKRLTLSEEEIE 389 Query: 288 KLDENIADAEENLGE--SEVREAHLAKSLYFVKVGEKEKALEQLKVTEGK 431 KL+ I A E E E+ E + GE+ KAL +LK +G+ Sbjct: 390 KLEAEIQKARERKEEIMKELEEIGSRRGELKSIAGERNKALMELKKAKGR 439
>MRCKB_RAT (Q7TT49) Serine/threonine-protein kinase MRCK beta (EC 2.7.11.1)| (CDC42-binding protein kinase beta) (Myotonic dystrophy kinase-related CDC42-binding kinase beta) (Myotonic dystrophy protein kinase-like beta) (MRCK beta) (DMPK-like beta) Length = 1713 Score = 34.3 bits (77), Expect = 0.14 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%) Frame = +3 Query: 168 SAVKSDDMAPLF-----ESLAATGVLEPDAALLAEMRAR--IDEEIRKLDENIADAEENL 326 S++ S + PL+ + L + LE +AL AE+RA+ + EE+RK+ + E L Sbjct: 852 SSLGSRTLDPLWKVRRSQKLDMSARLELQSALEAEIRAKQLVHEELRKVKDTSLAFESKL 911 Query: 327 GESEVREAHLAKSLYFVKVGEKEK 398 ESE + L + + +K +EK Sbjct: 912 KESEAKNRELLEEMQSLKKRMEEK 935
>MRCKB_MOUSE (Q7TT50) Serine/threonine-protein kinase MRCK beta (EC 2.7.11.1)| (CDC42-binding protein kinase beta) (Myotonic dystrophy kinase-related CDC42-binding kinase beta) (Myotonic dystrophy protein kinase-like beta) (MRCK beta) (DMPK-like beta) Length = 1713 Score = 33.9 bits (76), Expect = 0.18 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%) Frame = +3 Query: 168 SAVKSDDMAPLF-----ESLAATGVLEPDAALLAEMRAR--IDEEIRKLDENIADAEENL 326 S++ S + PL+ + L + LE +AL AE+RA+ + EE+RK+ ++ E L Sbjct: 852 SSLGSRTLDPLWKVRRSQKLDMSARLELQSALEAEIRAKQLVQEELRKVKDSSLAFESKL 911 Query: 327 GESEVREAHLAKSLYFVKVGEKEK 398 ESE + L + + ++ +EK Sbjct: 912 KESEAKNRELLEEMQSLRKRMEEK 935
>YHES_ECOLI (P63389) Hypothetical ABC transporter ATP-binding protein yheS| Length = 637 Score = 32.3 bits (72), Expect = 0.53 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 4/39 (10%) Frame = +3 Query: 264 ARIDEEIRKLDENIADAEENLGESEV----REAHLAKSL 368 AR+++E+ KL+ +A AEE LG+SE+ R+A L L Sbjct: 565 ARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACL 603
>YHES_ECO57 (P63390) Hypothetical ABC transporter ATP-binding protein yheS| Length = 637 Score = 32.3 bits (72), Expect = 0.53 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 4/39 (10%) Frame = +3 Query: 264 ARIDEEIRKLDENIADAEENLGESEV----REAHLAKSL 368 AR+++E+ KL+ +A AEE LG+SE+ R+A L L Sbjct: 565 ARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACL 603
>ATG20_CANGA (Q6FR93) Autophagy-related protein 20| Length = 753 Score = 32.3 bits (72), Expect = 0.53 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%) Frame = +3 Query: 123 DVDDLSKVDIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMR-----ARIDEEIR 287 D + + VDI+ V S + D+ E L T +LE D + ++DE++ Sbjct: 144 DSEAIESVDIKGKVSSGISDADVLKPQEELVHTAILENDNPFYDANKEISGSKKLDEKVN 203 Query: 288 KLDENIADAEENLGESEVREAHL 356 +D + N G+S+ R L Sbjct: 204 SVDSMAETTKVNSGDSKQRMGDL 226
>ACCA_GLOVI (Q7NCW2) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 326 Score = 32.0 bits (71), Expect = 0.70 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +3 Query: 249 LAEMRARIDEEIRKLDENIADAEENLGESEVREAHLAKSLY 371 L E+ R+D+ R +EN D L E E R A L + LY Sbjct: 19 LMELETRLDDIRRFAEENNVDVSTQLAEIEARAAELRRDLY 59
>IF2P_SCHPO (Q10251) Eukaryotic translation initiation factor 5B (eIF-5B)| (Translation initiation factor IF-2) Length = 1079 Score = 31.6 bits (70), Expect = 0.91 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 5/106 (4%) Frame = +3 Query: 129 DDLSKVDIRSDV-LSAVKSDDMAPLFESLAATGVLEPDAA----LLAEMRARIDEEIRKL 293 D L+ ++ S+V +S +D + + A + P+ +L E RAR +EE R Sbjct: 209 DTLASSEVSSEVDISTPAENDSSAKGKQAAGSKRKGPNVTALQKMLEEKRAREEEEQRIR 268 Query: 294 DENIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGK 431 +E AEE +EV EA K +K EKE+ ++ +GK Sbjct: 269 EEEARIAEEEKRLAEVEEAR--KEEARLKKKEKERKKKEEMKAQGK 312
>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC 3.6.1.-)| (ATP-dependent helicase SMARCA4) (SNF2-beta) (BRG-1 protein) (Mitotic growth and transcription activator) (Brahma protein homolog 1) (SWI/SNF-related matrix-associated actin Length = 1647 Score = 31.6 bits (70), Expect = 0.91 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Frame = +3 Query: 147 DIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKLDENIADA--EE 320 D+ DV+ ++ L SL + D+ +L + + ++I K D++ + EE Sbjct: 1524 DLEKDVMLLCQNAQTFNLEGSL-----IYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEE 1578 Query: 321 NLGESEVREAHLAKSLYFVKVGEKEKALEQLK 416 GE E E+ +K+G KEKA ++LK Sbjct: 1579 EEGEEEGSESESRSVKVKIKLGRKEKAQDRLK 1610
>RAD50_AERPE (Q9YFZ1) DNA double-strand break repair rad50 ATPase| Length = 919 Score = 31.2 bits (69), Expect = 1.2 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%) Frame = +3 Query: 198 LFESLAATGVLEPDAALLAEMRARID----EEIRKLDENIADAEENLGESEV--REAHLA 359 L E L G P+ AE + R+ EE+RKL+ ++ + NL EV REA Sbjct: 528 LEEGLRELGFQTPEDLAKAEQKLRMLRERLEELRKLENSLEEKVRNLSREEVALREAKTR 587 Query: 360 KSLYFVKVG-EKEKALEQLKVTEGKT 434 ++G ++E+A E+LK ++ Sbjct: 588 ALEVLQRLGIKEEEAREKLKTLSSES 613 Score = 29.6 bits (65), Expect = 3.5 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 10/95 (10%) Frame = +3 Query: 183 DDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKLDENIADAEENLG--------ESE 338 DD+ L A L + A LA +++R+D+ R L E I DA E L ES Sbjct: 298 DDLEKRRAELRAKASLAHEVAELARLQSRLDKLGRDL-EMIRDAVEKLEVSRRLKEIESA 356 Query: 339 VREA--HLAKSLYFVKVGEKEKALEQLKVTEGKTV 437 REA L ++ +K ++ L +VT G+++ Sbjct: 357 RREAENRLLEARSSIKEEQRRYTLLDYRVTRGRSI 391
>GAS7_RAT (O55148) Growth-arrest-specific protein 7 (GAS-7)| Length = 422 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/57 (26%), Positives = 27/57 (47%) Frame = +3 Query: 249 LAEMRARIDEEIRKLDENIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLKV 419 L R ++++K D +IAD + LGES A+ + + E +QL++ Sbjct: 249 LMNFRENFKKDMKKCDHHIADLRKQLGESRYASVEKARKALTERQKDLEMKTQQLEI 305
>IFB2_CAEEL (Q19286) Intermediate filament protein ifb-2 (Intermediate filament| protein B2) (IF-B2) (Cel IF B2) Length = 543 Score = 30.4 bits (67), Expect = 2.0 Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Frame = +3 Query: 204 ESLAATGVLEPDAALLAEMRARI--DEEIRKLDENIADAEENLGESEVREAHLAK--SLY 371 E++ + + +++++++ A + EEIRK++E+I L E E R + L + + Sbjct: 265 ETIFQSKISAVESSIVSKNEAAVFRQEEIRKMNESITTLRAKLSELEARNSALEREANTL 324 Query: 372 FVKVGEKEKALE 407 +++GE ++A E Sbjct: 325 QIQLGEDQRAYE 336
>SLAP_BACCI (P35824) S-layer-related protein precursor| Length = 1616 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +1 Query: 214 PPRACWSRTPHCSPRCAPGSTRRSA 288 P R W+R P CS C P S R A Sbjct: 1398 PRRWSWTRPPECSASCPPASNRPGA 1422
>ZN365_RAT (Q5PQS2) Protein ZNF365| Length = 408 Score = 30.0 bits (66), Expect = 2.7 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Frame = +3 Query: 126 VDDLSKVDIRSDVLSAVKSDDMAPLFESLAA--TGVLEPDAALLAEMRARIDEEIRKLDE 299 V + VDIR+D L A +S P ++ AA V E ++ + I++ I KL + Sbjct: 127 VQTYTAVDIRADSLDAPRSSSGLPTQDTKAAFEAHVREKFNRMVEAVDRTIEKRIDKLTK 186 Query: 300 NIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQ 410 +A L EVR A + + +V +E+AL + Sbjct: 187 ELAQKTAEL--LEVRAAFVQLTQKKQEVQRRERALHK 221
>RAD50_PYRFU (P58301) DNA double-strand break repair rad50 ATPase| Length = 882 Score = 30.0 bits (66), Expect = 2.7 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 14/90 (15%) Frame = +3 Query: 204 ESLAATGVLEPDAALLAEMRARIDEEIRKLDENIADAEEN-----LGESEVREAHLAKSL 368 E L +LE D L E++A+ E +R+L E + D L E E ++ + + Sbjct: 355 EILNKLAILEKDHQLYEEIKAK-KENLRQLKEKLGDKSPEDIKKLLEELETKKTTIEEER 413 Query: 369 YFV---------KVGEKEKALEQLKVTEGK 431 + K+G+ + A+E+LK +GK Sbjct: 414 NEITQRIGELKNKIGDLKTAIEELKKAKGK 443
>YKQ9_CAEEL (P34304) Hypothetical protein C06E1.9| Length = 643 Score = 30.0 bits (66), Expect = 2.7 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%) Frame = +3 Query: 123 DVDDLSKVDIRS---------DVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARID 275 +++ L++ D R+ + SA +AP+ + ++ A L A A Sbjct: 409 EIEKLARADKRAKDEETRKNNETKSASNLFSLAPILSDRPPSPPVDQQAELRAHAEAYRT 468 Query: 276 EEIRKLDENIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAI 443 + KL + ADA SE + A A++L + +K AL LK++E VAI Sbjct: 469 SVLTKLQKIRADAAGPSSPSE-KIAVDAENLVPLATSKKYSALNSLKISEADKVAI 523
>SYTM_ARATH (O04630) Threonyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.3) (Threonine--tRNA ligase) (ThrRS) Length = 709 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Frame = +3 Query: 228 LEPDAALLAEMRARIDEEIRKLDENIADA--------EENLGESEVREAHLAKSLYFVKV 383 + P A++ + + + K+ + I DA + + +VREA LA+ Y + V Sbjct: 610 ISPRQAIVCPISEKSQQYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQYNYILVV 669 Query: 384 GEKEKALEQLKV 419 GE E A Q+ V Sbjct: 670 GETEAATGQVSV 681
>YKI5_CAEEL (P46012) Hypothetical protein C01G6.5| Length = 952 Score = 29.6 bits (65), Expect = 3.5 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 11/115 (9%) Frame = +3 Query: 114 SHPDVDDLSKVDIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKL 293 S + D VD SD +S + ++L+AT P + + + ++++L Sbjct: 687 SKENTDQKRAVDDSSD-----ESARLVKQIKALSATPSSTPAESSKRKQKDTSSRKMKQL 741 Query: 294 DENIADAE-ENLGES----------EVREAHLAKSLYFVKVGEKEKALEQLKVTE 425 DE+ AD++ E+ G S R + KS KVG+KEK +E T+ Sbjct: 742 DESSADSDSEDDGRSGDKSTKRRDKARRSTRIGKSTPAKKVGKKEKVVEDEDETD 796
>CLPE_STRPN (P35594) ATP-dependent Clp protease ATP-binding subunit clpE| (Exported protein 4) Length = 752 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%) Frame = +3 Query: 234 PDAA--LLAEMRARIDEEIRKLDENIADAE----ENLGESEVREAHLAKSLYFVKVGEKE 395 PD A LL E ++++ + +D + D ENL RE K+ YF K Sbjct: 338 PDKAIDLLDEAGSKMNLTLNFVDPKVIDQRLIEAENLKSQATREEDFEKAAYFRDQIAKY 397 Query: 396 KALEQLKVTEGKTVAI 443 K +++ K+T+ T +I Sbjct: 398 KEMQKKKITDQDTPSI 413
>ORC2_MOUSE (Q60862) Origin recognition complex subunit 2| Length = 576 Score = 29.6 bits (65), Expect = 3.5 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 12/93 (12%) Frame = +3 Query: 180 SDDMAPLFESLAATGVLEPDAALLAEMRARIDEE-----IRKL-------DENIADAEEN 323 SD + FE+ +++ VL D L RAR+D++ +RK E + E Sbjct: 236 SDLVEEYFEAHSSSKVLTSDRTLQRLRRARVDQKTLHNLLRKFVPSFSAEIERLNQQHEK 295 Query: 324 LGESEVREAHLAKSLYFVKVGEKEKALEQLKVT 422 L + + HL ++ +G K LE+ + T Sbjct: 296 LFHKWMLQLHLGFNIVLYGLGSKRDLLEKFRTT 328
>MYH4_HUMAN (Q9Y623) Myosin-4 (Myosin heavy chain, skeletal muscle, fetal)| (Myosin heavy chain IIb) (MyHC-IIb) Length = 1939 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 6/62 (9%) Frame = +3 Query: 249 LAEMRARIDEEIRKLDENIADAEENLGESEVR------EAHLAKSLYFVKVGEKEKALEQ 410 L +++ ++D E +L ++ +AE +L E + E + KS K+ EK++ L+Q Sbjct: 1530 LEKVKKQLDHEKSELQTSLEEAEASLEHEEGKILRIQLELNQVKSEIDRKIAEKDEELDQ 1589 Query: 411 LK 416 LK Sbjct: 1590 LK 1591
>SYV_METCA (Q606C1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 921 Score = 29.3 bits (64), Expect = 4.5 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 25/94 (26%) Frame = +3 Query: 195 PLFESLA--------ATGVLEPDAA--LLAEMRA---------------RIDEEIRKLDE 299 PL E LA A G EP+AA L+ E+R R+D+EI++LD+ Sbjct: 812 PLLEKLARLESLNWLAPGQAEPEAAIALVGELRVLIPMRGLIDKEAELTRLDKEIQRLDK 871 Query: 300 NIADAEENLGESEVREAHLAKSLYFVKVGEKEKA 401 + E LG++ + L+K+ V EKEKA Sbjct: 872 ELPRLEGKLGDA----SFLSKAP--PAVVEKEKA 899
>HBHA_MYCTU (P0A5P6) Heparin-binding hemagglutinin (Adhesin)| Length = 198 Score = 28.9 bits (63), Expect = 5.9 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 12/102 (11%) Frame = +3 Query: 147 DIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRK-------LDENI 305 DI++ +L+A+ + D+A + T + E + R+R++E + L E + Sbjct: 8 DIKAPLLAALGAADLALATVNELITNLRERAEETRTDTRSRVEESRARLTKLQEDLPEQL 67 Query: 306 ADAEENLGESEVREA-----HLAKSLYFVKVGEKEKALEQLK 416 + E E+R+A A S Y V E ALE+L+ Sbjct: 68 TELREKFTAEELRKAAEGYLEAATSRYNELVERGEAALERLR 109
>HBHA_MYCBO (P0A5P7) Heparin-binding hemagglutinin (Adhesin)| Length = 198 Score = 28.9 bits (63), Expect = 5.9 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 12/102 (11%) Frame = +3 Query: 147 DIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRK-------LDENI 305 DI++ +L+A+ + D+A + T + E + R+R++E + L E + Sbjct: 8 DIKAPLLAALGAADLALATVNELITNLRERAEETRTDTRSRVEESRARLTKLQEDLPEQL 67 Query: 306 ADAEENLGESEVREA-----HLAKSLYFVKVGEKEKALEQLK 416 + E E+R+A A S Y V E ALE+L+ Sbjct: 68 TELREKFTAEELRKAAEGYLEAATSRYNELVERGEAALERLR 109
>PFDA_PYRFU (Q8U3T0) Prefoldin alpha subunit (GimC alpha subunit)| Length = 146 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 270 IDEEIRKLDENIADAEENLGESEVREAHLAK 362 +DE I++ DE I +E L E + R A LAK Sbjct: 99 LDERIKEYDEAIRKTQEALNELQKRAAELAK 129
>SYV_HUMAN (P26640) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1264 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -1 Query: 278 LVDPGAHLGEQCGVRLQHARGGQRLEQRRHVIGF 177 LVDP LG+ R++ R QRL +RR G+ Sbjct: 1194 LVDPARELGKLQAKRVEAQRQAQRLRERRAASGY 1227
>UBP2_KLULA (O42726) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)| (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing protease 2) (Deubiquitinating enzyme 2) Length = 1220 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +3 Query: 339 VREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVA 440 +REA+ KS+ V +G++ LE TE KTVA Sbjct: 345 IREAYTRKSMEVVLIGKQSMLLENELGTEKKTVA 378
>POTA_MYCPN (P75059) Spermidine/putrescine import ATP-binding protein potA (EC| 3.6.3.31) Length = 560 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Frame = +3 Query: 207 SLAATGVLEPDAALLAEMRARIDEEIRKLDENIADAEENLGESEVREAHLAKSLYFVKV- 383 +LA + V+EPD LL E + +D ++RK NL + E+++ H L F+ V Sbjct: 358 ALARSLVIEPDILLLDEPLSALDAKVRK----------NL-QKELQKIHQQSGLTFILVT 406 Query: 384 GEKEKAL 404 ++E+AL Sbjct: 407 HDQEEAL 413
>SYCP1_HUMAN (Q15431) Synaptonemal complex protein 1 (SCP-1)| Length = 976 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Frame = +3 Query: 246 LLAEMRARIDEEIRKLDENIADAEENLGESEVREAHLAKSLYFVKVG-----EKEKALEQ 410 LL E R +++ +L+E ENL +S ++ HL K L +KV +KALE+ Sbjct: 288 LLEESR----DKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEE 343 Query: 411 LKVTEGKTV 437 KT+ Sbjct: 344 DLQIATKTI 352
>BAG_STRAG (P27951) IgA FC receptor precursor (Beta antigen) (B antigen)| Length = 1164 Score = 28.5 bits (62), Expect = 7.7 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Frame = +3 Query: 114 SHPDVDDLSKV--DIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIR 287 ++ D D + K DIR A K +D A V E L + +A +D+EI+ Sbjct: 215 TNEDKDSMLKKIEDIRKQAQQADKKED--------AEVKVREELGKLFSSTKAGLDQEIQ 266 Query: 288 KLDENIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGK 431 + + +EEN + + A+ ++L + E +KA + T+ K Sbjct: 267 EHVKKETSSEENTQKVDEHYANSLQNLAQKSLEELDKATTNEQATQVK 314
>VSI1_REOVL (P04506) Sigma-1 protein precursor (Hemagglutinin) (Cell attachment| protein) (Minor outer capsid protein) Length = 470 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/80 (26%), Positives = 37/80 (46%) Frame = +3 Query: 129 DDLSKVDIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKLDENIA 308 D ++ V+ R D L V S+ A G L + LA + R+ E+ +LD I Sbjct: 103 DRINAVEPRVDSLDTVTSNLTGRTSTLEADVGSLRTE---LAALTTRVTTEVTRLDGLIN 159 Query: 309 DAEENLGESEVREAHLAKSL 368 + ++GE R +++ S+ Sbjct: 160 SGQNSIGELSTRLSNVETSM 179
>YLK6_CAEEL (P41954) Hypothetical protein D1044.6| Length = 1009 Score = 28.5 bits (62), Expect = 7.7 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Frame = +3 Query: 219 TGVLEPDAALLAEMRARIDEEIRKLDENIADAEENLGESEVREAHLAKSLYFVKVGEKEK 398 T LE AEM +I++E RK DE AEE + + + AK EKEK Sbjct: 407 TAALEESTRRQAEMNRQIEDEARKRDELQRIAEEKKRKQLLEDQCRAKQ-------EKEK 459 Query: 399 ----ALEQLKV 419 LEQ+++ Sbjct: 460 RDAEELEQMRL 470
>SYV_RAT (Q04462) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1264 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -1 Query: 278 LVDPGAHLGEQCGVRLQHARGGQRLEQRRHVIGF 177 LVDP LG+ R + R QRL++RR G+ Sbjct: 1194 LVDPARELGKLQAKRSEAQRQAQRLQERRAASGY 1227
>OPA1_ONCMA (O93248) Dynamin-like 120 kDa protein, mitochondrial precursor| (120-kDa G protein expressed in motor neurons) (mG120) Length = 971 Score = 28.5 bits (62), Expect = 7.7 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = +3 Query: 279 EIRKLDENIADAEENLGESEVREAHL 356 E+R+L++N+ + E+ GE R+ HL Sbjct: 913 EVRRLEKNVKEVLEDFGEDNERKVHL 938
>AMIB_PSEAE (Q51416) ATP-dependent protease ATP-binding subunit-like protein| amiB Length = 371 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +3 Query: 270 IDEEIRKLDENIADAEENLGESEVREAHLA 359 +D+ R+ DE A A ENL E+ + +AHL+ Sbjct: 8 LDQSRRQQDEEQALARENLAEASLLQAHLS 37
>ATPX_RHORU (P15015) ATP synthase B' chain (EC 3.6.3.14) (Subunit II)| Length = 161 Score = 28.5 bits (62), Expect = 7.7 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 7/67 (10%) Frame = +3 Query: 249 LAEMRARIDEEIRKLDENIADAEENLGESEVREAHLAKSLYF-VKVGE------KEKALE 407 LAE RAR +EIR + E A A +E R A +AK+L +K GE +++AL Sbjct: 71 LAEARARAHDEIRAVTEAAAKA------AEARNAEVAKALNTRIKDGEARIVQARDEALT 124 Query: 408 QLKVTEG 428 ++ G Sbjct: 125 HVREVAG 131 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,084,417 Number of Sequences: 219361 Number of extensions: 644992 Number of successful extensions: 3508 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 3358 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3491 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
