ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast41a01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084I15, full insert sequence Length = 1371 Score = 430 bits (217), Expect = e-117 Identities = 343/385 (89%) Strand = Plus / Plus Query: 55 gcggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctct 114 |||||||||| | |||||||||| |||||| |||| ||||||||||||||||| |||| Sbjct: 44 gcggcgaggaggcgaagcaggagcgccacctggtgctggcccacaagctcttcctcctct 103 Query: 115 cccaccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccg 174 ||||||||||| | ||||||||| ||||||||| | |||||||||||| ||| ||||| Sbjct: 104 cccaccccgacctcgacgacctcgccaaggtcgccctccgctccgacgccctcgacgccg 163 Query: 175 tcaaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagc 234 |||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct: 164 tcaagtccgatggcatggcgccgctgttcgagtcgctggccgccgcgggcgtcctggagc 223 Query: 235 cggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcg 294 |||||| ||| |||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 224 cggacgacgcgctgctcgccgagatgcgcgcgcggatcgacgaggaggtccgcaagctcg 283 Query: 295 atgagaatattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatc 354 | ||||| |||||||||||||||||||| ||||| ||||| ||||||||||| ||||||| Sbjct: 284 acgagaaaattgctgatgctgaagagaatttgggtgagagcgaagtgcgtgaggcccatc 343 Query: 355 ttgccaagtccttgtactttgtaaaggttggcgagaaggaaaaagcactggaacaactta 414 | || || ||||||||||| | | |||||| |||||||||||||||||||| || |||| Sbjct: 344 tggcgaaatccttgtacttcatgagggttggagagaaggaaaaagcactggagcagctta 403 Query: 415 aagttactgaaggaaaaactgtagc 439 ||||||||||||| ||||||||||| Sbjct: 404 aagttactgaagggaaaactgtagc 428
>gb|BT016822.1| Zea mays clone Contig655 mRNA sequence Length = 1636 Score = 349 bits (176), Expect = 5e-93 Identities = 332/384 (86%) Strand = Plus / Plus Query: 56 cggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctc 115 ||||||||| |||||||||||| ||||||| |||| ||||||||||||||||| || || Sbjct: 138 cggcgaggaggggaagcaggagcggcacctggtgctggcccacaagctcttccttctatc 197 Query: 116 ccaccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgt 175 ||||||| |||||| |||||||||||||||| | ||||| |||| || ||| | |||| Sbjct: 198 ccacccctccgttgatgacctctccaaggtcgccctccgcgccgaagtcctcgacaccgt 257 Query: 176 caaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagcc 235 ||||||||||| |||||| ||||||| |||||||||| |||| |||| ||||||||| Sbjct: 258 gaaatccgatgatatggcgacgctgtttgagtcgctggtcgccgcgggtgtgctggaggg 317 Query: 236 ggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcga 295 ||||||||| ||||| ||||||||||| | |||| |||||||||||||||||||| || Sbjct: 318 ggacgccgcgctgctggccgagatgcgtgggaggattgacgaggagatccgcaagctaga 377 Query: 296 tgagaatattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatct 355 |||||| ||||||||||| || ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 378 tgagaaaattgctgatgcggaggagaacttgggtgagagcgaagtccgtgaagcacatct 437 Query: 356 tgccaagtccttgtactttgtaaaggttggcgagaaggaaaaagcactggaacaacttaa 415 |||||| || ||||||||| ||| ||| || ||||||||||| || |||||||| ||||| Sbjct: 438 tgccaaatctttgtactttataagggtcggtgagaaggaaaaggccctggaacagcttaa 497 Query: 416 agttactgaaggaaaaactgtagc 439 ||| |||||||||||||||||||| Sbjct: 498 agtcactgaaggaaaaactgtagc 521
>gb|AY104803.1| Zea mays PCO064157 mRNA sequence Length = 1631 Score = 349 bits (176), Expect = 5e-93 Identities = 332/384 (86%) Strand = Plus / Plus Query: 56 cggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctc 115 ||||||||| |||||||||||| ||||||| |||| ||||||||||||||||| || || Sbjct: 153 cggcgaggaggggaagcaggagcggcacctggtgctggcccacaagctcttccttctatc 212 Query: 116 ccaccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgt 175 ||||||| |||||| |||||||||||||||| | ||||| |||| || ||| | |||| Sbjct: 213 ccacccctccgttgatgacctctccaaggtcgccctccgcgccgaagtcctcgacaccgt 272 Query: 176 caaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagcc 235 ||||||||||| |||||| ||||||| |||||||||| |||| |||| ||||||||| Sbjct: 273 gaaatccgatgatatggcgacgctgtttgagtcgctggtcgccgcgggtgtgctggaggg 332 Query: 236 ggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcga 295 ||||||||| ||||| ||||||||||| | |||| |||||||||||||||||||| || Sbjct: 333 ggacgccgcgctgctggccgagatgcgtgggaggattgacgaggagatccgcaagctaga 392 Query: 296 tgagaatattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatct 355 |||||| ||||||||||| || ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 393 tgagaaaattgctgatgcggaggagaacttgggtgagagcgaagtccgtgaagcacatct 452 Query: 356 tgccaagtccttgtactttgtaaaggttggcgagaaggaaaaagcactggaacaacttaa 415 |||||| || ||||||||| ||| ||| || ||||||||||| || |||||||| ||||| Sbjct: 453 tgccaaatctttgtactttataagggtcggtgagaaggaaaaggccctggaacagcttaa 512 Query: 416 agttactgaaggaaaaactgtagc 439 ||| |||||||||||||||||||| Sbjct: 513 agtcactgaaggaaaaactgtagc 536
>ref|XM_472939.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1170 Score = 339 bits (171), Expect = 5e-90 Identities = 330/383 (86%) Strand = Plus / Plus Query: 57 ggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctcc 116 |||||||| ||||||||| || ||||||| |||| || |||||||| ||||||||||| Sbjct: 16 ggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcg 75 Query: 117 caccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgtc 176 ||||| ||||| ||||||||| ||||||||||| ||||| |||| || ||| |||| ||| Sbjct: 76 cacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtc 135 Query: 177 aaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagccg 236 ||||||||||| |||||| | |||| ||||||||||| ||| |||||||||||| || Sbjct: 136 aaatccgatgatatggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacg 195 Query: 237 gacgccgcactgctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcgat 296 ||||| || |||||||| |||||||||| | ||||||| ||||||||||| ||||| || Sbjct: 196 gacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggagatccggaagcttgac 255 Query: 297 gagaatattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatctt 356 ||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 256 gagaagatcgctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatcta 315 Query: 357 gccaagtccttgtactttgtaaaggttggcgagaaggaaaaagcactggaacaacttaaa 416 ||||| || ||||| || ||| |||||| |||||||| || ||||| ||||| |||||| Sbjct: 316 gccaaatcgttgtatttcataagggttggagagaaggagaaggcactagaacagcttaaa 375 Query: 417 gttactgaaggaaaaactgtagc 439 ||||||||||||||||||||||| Sbjct: 376 gttactgaaggaaaaactgtagc 398
>dbj|AK104327.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F11, full insert sequence Length = 1510 Score = 339 bits (171), Expect = 5e-90 Identities = 330/383 (86%) Strand = Plus / Plus Query: 57 ggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctcc 116 |||||||| ||||||||| || ||||||| |||| || |||||||| ||||||||||| Sbjct: 137 ggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcg 196 Query: 117 caccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgtc 176 ||||| ||||| ||||||||| ||||||||||| ||||| |||| || ||| |||| ||| Sbjct: 197 cacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtc 256 Query: 177 aaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagccg 236 ||||||||||| |||||| | |||| ||||||||||| ||| |||||||||||| || Sbjct: 257 aaatccgatgatatggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacg 316 Query: 237 gacgccgcactgctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcgat 296 ||||| || |||||||| |||||||||| | ||||||| ||||||||||| ||||| || Sbjct: 317 gacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggagatccggaagcttgac 376 Query: 297 gagaatattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatctt 356 ||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 377 gagaagatcgctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatcta 436 Query: 357 gccaagtccttgtactttgtaaaggttggcgagaaggaaaaagcactggaacaacttaaa 416 ||||| || ||||| || ||| |||||| |||||||| || ||||| ||||| |||||| Sbjct: 437 gccaaatcgttgtatttcataagggttggagagaaggagaaggcactagaacagcttaaa 496 Query: 417 gttactgaaggaaaaactgtagc 439 ||||||||||||||||||||||| Sbjct: 497 gttactgaaggaaaaactgtagc 519
>dbj|AK068887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002M12, full insert sequence Length = 1515 Score = 339 bits (171), Expect = 5e-90 Identities = 330/383 (86%) Strand = Plus / Plus Query: 57 ggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctcc 116 |||||||| ||||||||| || ||||||| |||| || |||||||| ||||||||||| Sbjct: 142 ggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcg 201 Query: 117 caccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgtc 176 ||||| ||||| ||||||||| ||||||||||| ||||| |||| || ||| |||| ||| Sbjct: 202 cacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtc 261 Query: 177 aaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagccg 236 ||||||||||| |||||| | |||| ||||||||||| ||| |||||||||||| || Sbjct: 262 aaatccgatgatatggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacg 321 Query: 237 gacgccgcactgctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcgat 296 ||||| || |||||||| |||||||||| | ||||||| ||||||||||| ||||| || Sbjct: 322 gacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggagatccggaagcttgac 381 Query: 297 gagaatattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatctt 356 ||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 382 gagaagatcgctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatcta 441 Query: 357 gccaagtccttgtactttgtaaaggttggcgagaaggaaaaagcactggaacaacttaaa 416 ||||| || ||||| || ||| |||||| |||||||| || ||||| ||||| |||||| Sbjct: 442 gccaaatcgttgtatttcataagggttggagagaaggagaaggcactagaacagcttaaa 501 Query: 417 gttactgaaggaaaaactgtagc 439 ||||||||||||||||||||||| Sbjct: 502 gttactgaaggaaaaactgtagc 524
>dbj|AB037149.1| Oryza sativa (japonica cultivar-group) OsRPN7 mRNA for 26S proteasome regulatory particle non-ATPase subunit7, complete cds Length = 1547 Score = 339 bits (171), Expect = 5e-90 Identities = 330/383 (86%) Strand = Plus / Plus Query: 57 ggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctcc 116 |||||||| ||||||||| || ||||||| |||| || |||||||| ||||||||||| Sbjct: 100 ggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcg 159 Query: 117 caccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgtc 176 ||||| ||||| ||||||||| ||||||||||| ||||| |||| || ||| |||| ||| Sbjct: 160 cacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtc 219 Query: 177 aaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagccg 236 ||||||||||| |||||| | |||| ||||||||||| ||| |||||||||||| || Sbjct: 220 aaatccgatgatatggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacg 279 Query: 237 gacgccgcactgctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcgat 296 ||||| || |||||||| |||||||||| | ||||||| ||||||||||| ||||| || Sbjct: 280 gacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggagatccggaagcttgac 339 Query: 297 gagaatattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatctt 356 ||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 340 gagaagatcgctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatcta 399 Query: 357 gccaagtccttgtactttgtaaaggttggcgagaaggaaaaagcactggaacaacttaaa 416 ||||| || ||||| || ||| |||||| |||||||| || ||||| ||||| |||||| Sbjct: 400 gccaaatcgttgtatttcataagggttggagagaaggagaaggcactagaacagcttaaa 459 Query: 417 gttactgaaggaaaaactgtagc 439 ||||||||||||||||||||||| Sbjct: 460 gttactgaaggaaaaactgtagc 482
>gb|AY107400.1| Zea mays PCO125916 mRNA sequence Length = 1443 Score = 311 bits (157), Expect = 1e-81 Identities = 328/385 (85%) Strand = Plus / Plus Query: 55 gcggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctct 114 |||| ||||| ||||||||| || ||||||| | || || |||||||| ||||| || | Sbjct: 58 gcggggaggacgggaagcagcagccgcacctggtactggcgcacaagctgttcctcctgt 117 Query: 115 cccaccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccg 174 | ||||||||||| ||||||||| ||||||||||| | ||| | |||||| || | || | Sbjct: 118 cgcaccccgacgtcgacgacctcgccaaggtcgacctacgcgctgacgtgttcgcagcag 177 Query: 175 tcaaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagc 234 ||||||||||||||||||| | |||| ||||||| |||| || ||||| |||||| Sbjct: 178 tcaaatccgatgacatggcagctctgtacgagtcgttggcggcggacggcgtactggaga 237 Query: 235 cggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcg 294 ||||||| || ||||| ||||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 238 cggacgcggcgctgctggccgagatgcgcgccaggatcgacgaggagatccggaagctcg 297 Query: 295 atgagaatattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatc 354 | ||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||||||| Sbjct: 298 acgagaagattgctgatgcagaggagaacttgggtgagagtgaagtgcgtgaggcccatc 357 Query: 355 ttgccaagtccttgtactttgtaaaggttggcgagaaggaaaaagcactggaacaactta 414 | ||||| ||||| || || ||| |||||| |||||||| ||||||||||| || |||| Sbjct: 358 tcgccaaatccttatatttcataagggttggggagaaggagaaagcactggagcagctta 417 Query: 415 aagttactgaaggaaaaactgtagc 439 ||||||||||||||||||||||||| Sbjct: 418 aagttactgaaggaaaaactgtagc 442
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 283 bits (143), Expect = 2e-73 Identities = 221/247 (89%) Strand = Plus / Plus Query: 55 gcggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctct 114 |||||||||| | |||||||||| |||||| |||| ||||||||||||||||| |||| Sbjct: 23480940 gcggcgaggaggcgaagcaggagcgccacctggtgctggcccacaagctcttcctcctct 23480999 Query: 115 cccaccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccg 174 ||||||||||| | ||||||||| ||||||||| | |||||||||||| ||| ||||| Sbjct: 23481000 cccaccccgacctcgacgacctcgccaaggtcgccctccgctccgacgccctcgacgccg 23481059 Query: 175 tcaaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagc 234 |||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct: 23481060 tcaagtccgatggcatggcgccgctgttcgagtcgctggccgccgcgggcgtcctggagc 23481119 Query: 235 cggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcg 294 |||||| ||| |||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 23481120 cggacgacgcgctgctcgccgagatgcgcgcgcggatcgacgaggaggtccgcaagctcg 23481179 Query: 295 atgagaa 301 | ||||| Sbjct: 23481180 acgagaa 23481186 Score = 208 bits (105), Expect = 1e-50 Identities = 216/251 (86%), Gaps = 4/251 (1%) Strand = Plus / Plus Query: 55 gcggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctct 114 |||||||||| | |||||||||| |||||| |||| || ||| |||||||||| |||| Sbjct: 23410896 gcggcgaggaggcgaagcaggagcgccacctggtgctggctcacgagctcttcctcctct 23410955 Query: 115 cccaccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccg 174 ||| ||||||| | ||||||||| |||| |||| | |||||||||| | ||| ||||| Sbjct: 23410956 cccgccccgacctcgacgacctcgccaatgtcgccctccgctccgatgccctcgacgccg 23411015 Query: 175 tcaaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctg---g 231 |||| ||||||| |||||||||||||||||||||||||||| || ||||||||||| Sbjct: 23411016 tcaagtccgatggcatggcgccgctgttcgagtcgctggccaccgcgggcgtgctgctca 23411075 Query: 232 agccggacgccgca-ctgctcgccgagatgcgcgcccggatcgacgaggagatccgcaag 290 ||||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||| Sbjct: 23411076 agccggacgacgcagctgctcgccgagatgcgcgcgcggatcgacgaggaggtccgcaag 23411135 Query: 291 ctcgatgagaa 301 ||||| ||||| Sbjct: 23411136 ctcgacgagaa 23411146 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 303 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 362 |||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| || || Sbjct: 23483616 attgctgatgctgaagagaatttgggtgagagcgaagtgcgtgaggcccatctggcgaaa 23483675 Query: 363 tccttgtactt 373 ||||||||||| Sbjct: 23483676 tccttgtactt 23483686 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 303 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 362 |||||||| ||||||||||| ||||| ||| |||||||||||| |||||| | ||||| Sbjct: 23452756 attgctgacgctgaagagaatttgggtgaggttgaagtgcgtgaggcccatatagccaaa 23452815 Query: 363 tccttgtactttgtaaaggttggcgagaagg 393 ||||||||||| ||| |||||| ||||||| Sbjct: 23452816 tccttgtacttcataagggttggggagaagg 23452846 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 391 aggaaaaagcactggaacaacttaaagttactgaaggaaaaactgtagc 439 |||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct: 23483788 aggaaaaagcactggagcagcttaaagttactgaagggaaaactgtagc 23483836 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 303 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 362 |||||||| ||||||||||| ||||| | || |||||||||||| |||||||| || | Sbjct: 23472163 attgctgacgctgaagagaatttgggtgggattgaagtgcgtgaggcccatctagctgaa 23472222 Query: 363 tccttgtactt 373 ||||||||||| Sbjct: 23472223 tccttgtactt 23472233 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 260 gcgcgcccggatcgacgaggagatccgcaagctcga 295 |||||| ||||||||||||||| ||||||||||||| Sbjct: 23471376 gcgcgcgcggatcgacgaggaggtccgcaagctcga 23471411 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 247 tgctcgccgagatgcgcgcccggatcgacgag 278 |||||||||| ||||||||| ||||||||||| Sbjct: 6037642 tgctcgccgacatgcgcgcctggatcgacgag 6037611 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Plus Query: 93 gcccacaagctcttcctgctctcccaccccgacg 126 |||| |||||||||||| |||||||| ||||||| Sbjct: 23471204 gcccgcaagctcttcctcctctcccatcccgacg 23471237 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 151 tccgctccgacgtgctctccgccgtcaaatccg 183 ||||||||||||| ||| |||||||||||||| Sbjct: 23471269 tccgctccgacgtcctccacgccgtcaaatccg 23471301 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 tggacggaggcggtggcggcggaa 48 ||||||| |||||||||||||||| Sbjct: 21998846 tggacggcggcggtggcggcggaa 21998869
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 283 bits (143), Expect = 2e-73 Identities = 221/247 (89%) Strand = Plus / Plus Query: 55 gcggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctct 114 |||||||||| | |||||||||| |||||| |||| ||||||||||||||||| |||| Sbjct: 46623 gcggcgaggaggcgaagcaggagcgccacctggtgctggcccacaagctcttcctcctct 46682 Query: 115 cccaccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccg 174 ||||||||||| | ||||||||| ||||||||| | |||||||||||| ||| ||||| Sbjct: 46683 cccaccccgacctcgacgacctcgccaaggtcgccctccgctccgacgccctcgacgccg 46742 Query: 175 tcaaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagc 234 |||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct: 46743 tcaagtccgatggcatggcgccgctgttcgagtcgctggccgccgcgggcgtcctggagc 46802 Query: 235 cggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcg 294 |||||| ||| |||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 46803 cggacgacgcgctgctcgccgagatgcgcgcgcggatcgacgaggaggtccgcaagctcg 46862 Query: 295 atgagaa 301 | ||||| Sbjct: 46863 acgagaa 46869 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 303 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 362 |||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| || || Sbjct: 49299 attgctgatgctgaagagaatttgggtgagagcgaagtgcgtgaggcccatctggcgaaa 49358 Query: 363 tccttgtactt 373 ||||||||||| Sbjct: 49359 tccttgtactt 49369 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 303 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 362 |||||||| ||||||||||| ||||| ||| |||||||||||| |||||| | ||||| Sbjct: 18439 attgctgacgctgaagagaatttgggtgaggttgaagtgcgtgaggcccatatagccaaa 18498 Query: 363 tccttgtactttgtaaaggttggcgagaagg 393 ||||||||||| ||| |||||| ||||||| Sbjct: 18499 tccttgtacttcataagggttggggagaagg 18529 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 391 aggaaaaagcactggaacaacttaaagttactgaaggaaaaactgtagc 439 |||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct: 49471 aggaaaaagcactggagcagcttaaagttactgaagggaaaactgtagc 49519 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 303 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 362 |||||||| ||||||||||| ||||| | || |||||||||||| |||||||| || | Sbjct: 37846 attgctgacgctgaagagaatttgggtgggattgaagtgcgtgaggcccatctagctgaa 37905 Query: 363 tccttgtactt 373 ||||||||||| Sbjct: 37906 tccttgtactt 37916 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 260 gcgcgcccggatcgacgaggagatccgcaagctcga 295 |||||| ||||||||||||||| ||||||||||||| Sbjct: 37059 gcgcgcgcggatcgacgaggaggtccgcaagctcga 37094 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Plus Query: 93 gcccacaagctcttcctgctctcccaccccgacg 126 |||| |||||||||||| |||||||| ||||||| Sbjct: 36887 gcccgcaagctcttcctcctctcccatcccgacg 36920 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 151 tccgctccgacgtgctctccgccgtcaaatccg 183 ||||||||||||| ||| |||||||||||||| Sbjct: 36952 tccgctccgacgtcctccacgccgtcaaatccg 36984
>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1653_F07, complete sequence Length = 110109 Score = 283 bits (143), Expect = 2e-73 Identities = 221/247 (89%) Strand = Plus / Plus Query: 55 gcggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctct 114 |||||||||| | |||||||||| |||||| |||| ||||||||||||||||| |||| Sbjct: 99615 gcggcgaggaggcgaagcaggagcgccacctggtgctggcccacaagctcttcctcctct 99674 Query: 115 cccaccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccg 174 ||||||||||| | ||||||||| ||||||||| | |||||||||||| ||| ||||| Sbjct: 99675 cccaccccgacctcgacgacctcgccaaggtcgccctccgctccgacgccctcgacgccg 99734 Query: 175 tcaaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagc 234 |||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct: 99735 tcaagtccgatggcatggcgccgctgttcgagtcgctggccgccgcgggcgtcctggagc 99794 Query: 235 cggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcg 294 |||||| ||| |||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 99795 cggacgacgcgctgctcgccgagatgcgcgcgcggatcgacgaggaggtccgcaagctcg 99854 Query: 295 atgagaa 301 | ||||| Sbjct: 99855 acgagaa 99861 Score = 208 bits (105), Expect = 1e-50 Identities = 216/251 (86%), Gaps = 4/251 (1%) Strand = Plus / Plus Query: 55 gcggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctct 114 |||||||||| | |||||||||| |||||| |||| || ||| |||||||||| |||| Sbjct: 29571 gcggcgaggaggcgaagcaggagcgccacctggtgctggctcacgagctcttcctcctct 29630 Query: 115 cccaccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccg 174 ||| ||||||| | ||||||||| |||| |||| | |||||||||| | ||| ||||| Sbjct: 29631 cccgccccgacctcgacgacctcgccaatgtcgccctccgctccgatgccctcgacgccg 29690 Query: 175 tcaaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctg---g 231 |||| ||||||| |||||||||||||||||||||||||||| || ||||||||||| Sbjct: 29691 tcaagtccgatggcatggcgccgctgttcgagtcgctggccaccgcgggcgtgctgctca 29750 Query: 232 agccggacgccgca-ctgctcgccgagatgcgcgcccggatcgacgaggagatccgcaag 290 ||||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||| Sbjct: 29751 agccggacgacgcagctgctcgccgagatgcgcgcgcggatcgacgaggaggtccgcaag 29810 Query: 291 ctcgatgagaa 301 ||||| ||||| Sbjct: 29811 ctcgacgagaa 29821 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 303 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 362 |||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| || || Sbjct: 102291 attgctgatgctgaagagaatttgggtgagagcgaagtgcgtgaggcccatctggcgaaa 102350 Query: 363 tccttgtactt 373 ||||||||||| Sbjct: 102351 tccttgtactt 102361 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 303 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 362 |||||||| ||||||||||| ||||| ||| |||||||||||| |||||| | ||||| Sbjct: 71431 attgctgacgctgaagagaatttgggtgaggttgaagtgcgtgaggcccatatagccaaa 71490 Query: 363 tccttgtactttgtaaaggttggcgagaagg 393 ||||||||||| ||| |||||| ||||||| Sbjct: 71491 tccttgtacttcataagggttggggagaagg 71521 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 391 aggaaaaagcactggaacaacttaaagttactgaaggaaaaactgtagc 439 |||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct: 102463 aggaaaaagcactggagcagcttaaagttactgaagggaaaactgtagc 102511 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 303 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 362 |||||||| ||||||||||| ||||| | || |||||||||||| |||||||| || | Sbjct: 90838 attgctgacgctgaagagaatttgggtgggattgaagtgcgtgaggcccatctagctgaa 90897 Query: 363 tccttgtactt 373 ||||||||||| Sbjct: 90898 tccttgtactt 90908 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 260 gcgcgcccggatcgacgaggagatccgcaagctcga 295 |||||| ||||||||||||||| ||||||||||||| Sbjct: 90051 gcgcgcgcggatcgacgaggaggtccgcaagctcga 90086 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Plus Query: 93 gcccacaagctcttcctgctctcccaccccgacg 126 |||| |||||||||||| |||||||| ||||||| Sbjct: 89879 gcccgcaagctcttcctcctctcccatcccgacg 89912 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 151 tccgctccgacgtgctctccgccgtcaaatccg 183 ||||||||||||| ||| |||||||||||||| Sbjct: 89944 tccgctccgacgtcctccacgccgtcaaatccg 89976
>ref|XM_466567.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2208 Score = 212 bits (107), Expect = 7e-52 Identities = 218/253 (86%), Gaps = 4/253 (1%) Strand = Plus / Plus Query: 55 gcggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctct 114 |||||||||| | |||||||||| |||||| |||| || ||| |||||||||| |||| Sbjct: 1955 gcggcgaggaggcgaagcaggagcgccacctggtgctggctcacgagctcttcctcctct 2014 Query: 115 cccaccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccg 174 ||| ||||||| | ||||||||| |||| |||| | |||||||||| | ||| ||||| Sbjct: 2015 cccgccccgacctcgacgacctcgccaatgtcgccctccgctccgatgccctcgacgccg 2074 Query: 175 tcaaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctg---g 231 |||| ||||||| |||||||||||||||||||||||||||| || ||||||||||| Sbjct: 2075 tcaagtccgatggcatggcgccgctgttcgagtcgctggccaccgcgggcgtgctgctca 2134 Query: 232 agccggacgccgca-ctgctcgccgagatgcgcgcccggatcgacgaggagatccgcaag 290 ||||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||| Sbjct: 2135 agccggacgacgcagctgctcgccgagatgcgcgcgcggatcgacgaggaggtccgcaag 2194 Query: 291 ctcgatgagaata 303 ||||| ||||||| Sbjct: 2195 ctcgacgagaata 2207
>dbj|AP006457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0038P01 Length = 148506 Score = 208 bits (105), Expect = 1e-50 Identities = 216/251 (86%), Gaps = 4/251 (1%) Strand = Plus / Plus Query: 55 gcggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctct 114 |||||||||| | |||||||||| |||||| |||| || ||| |||||||||| |||| Sbjct: 123971 gcggcgaggaggcgaagcaggagcgccacctggtgctggctcacgagctcttcctcctct 124030 Query: 115 cccaccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccg 174 ||| ||||||| | ||||||||| |||| |||| | |||||||||| | ||| ||||| Sbjct: 124031 cccgccccgacctcgacgacctcgccaatgtcgccctccgctccgatgccctcgacgccg 124090 Query: 175 tcaaatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctg---g 231 |||| ||||||| |||||||||||||||||||||||||||| || ||||||||||| Sbjct: 124091 tcaagtccgatggcatggcgccgctgttcgagtcgctggccaccgcgggcgtgctgctca 124150 Query: 232 agccggacgccgca-ctgctcgccgagatgcgcgcccggatcgacgaggagatccgcaag 290 ||||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||| Sbjct: 124151 agccggacgacgcagctgctcgccgagatgcgcgcgcggatcgacgaggaggtccgcaag 124210 Query: 291 ctcgatgagaa 301 ||||| ||||| Sbjct: 124211 ctcgacgagaa 124221
>ref|NM_189491.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 167 bits (84), Expect = 4e-38 Identities = 189/224 (84%) Strand = Plus / Plus Query: 58 gcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctccc 117 ||||||| | |||||||||| |||||| | |||| ||||||||||||||||| ||||||| Sbjct: 356 gcgaggaggcgaagcaggagcagcaccgggtgctagcccacaagctcttcctcctctccc 415 Query: 118 accccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgtca 177 |||||||| | |||||||| ||||||| | | |||||||||||| ||| |||||||| Sbjct: 416 accccgacctcaacgacctcgccaaggttgccctccgctccgacgccctcgacgccgtca 475 Query: 178 aatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagccgg 237 | ||||||| |||||||| ||| || |||||| |||||| || |||||||||||||||| Sbjct: 476 agtccgatggcatggcgctgctatttgagtcgttggccgtcaacggcgtgctggagccgg 535 Query: 238 acgccgcactgctcgccgagatgcgcgcccggatcgacgaggag 281 | | ||| ||||||| ||||||||||| || ||||| |||||| Sbjct: 536 atgacgcgctgctcgtcgagatgcgcgtgcgaatcgatgaggag 579
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 167 bits (84), Expect = 4e-38 Identities = 189/224 (84%) Strand = Plus / Plus Query: 58 gcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctccc 117 ||||||| | |||||||||| |||||| | |||| ||||||||||||||||| ||||||| Sbjct: 43069754 gcgaggaggcgaagcaggagcagcaccgggtgctagcccacaagctcttcctcctctccc 43069813 Query: 118 accccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgtca 177 |||||||| | |||||||| ||||||| | | |||||||||||| ||| |||||||| Sbjct: 43069814 accccgacctcaacgacctcgccaaggttgccctccgctccgacgccctcgacgccgtca 43069873 Query: 178 aatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagccgg 237 | ||||||| |||||||| ||| || |||||| |||||| || |||||||||||||||| Sbjct: 43069874 agtccgatggcatggcgctgctatttgagtcgttggccgtcaacggcgtgctggagccgg 43069933 Query: 238 acgccgcactgctcgccgagatgcgcgcccggatcgacgaggag 281 | | ||| ||||||| ||||||||||| || ||||| |||||| Sbjct: 43069934 atgacgcgctgctcgtcgagatgcgcgtgcgaatcgatgaggag 43069977
>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0459B04 Length = 142475 Score = 167 bits (84), Expect = 4e-38 Identities = 189/224 (84%) Strand = Plus / Plus Query: 58 gcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctccc 117 ||||||| | |||||||||| |||||| | |||| ||||||||||||||||| ||||||| Sbjct: 66783 gcgaggaggcgaagcaggagcagcaccgggtgctagcccacaagctcttcctcctctccc 66842 Query: 118 accccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgtca 177 |||||||| | |||||||| ||||||| | | |||||||||||| ||| |||||||| Sbjct: 66843 accccgacctcaacgacctcgccaaggttgccctccgctccgacgccctcgacgccgtca 66902 Query: 178 aatccgatgacatggcgccgctgttcgagtcgctggccgccacgggcgtgctggagccgg 237 | ||||||| |||||||| ||| || |||||| |||||| || |||||||||||||||| Sbjct: 66903 agtccgatggcatggcgctgctatttgagtcgttggccgtcaacggcgtgctggagccgg 66962 Query: 238 acgccgcactgctcgccgagatgcgcgcccggatcgacgaggag 281 | | ||| ||||||| ||||||||||| || ||||| |||||| Sbjct: 66963 atgacgcgctgctcgtcgagatgcgcgtgcgaatcgatgaggag 67006
>ref|XM_483067.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1470 Score = 133 bits (67), Expect = 5e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 139 ccaaggtcgacatccgctccgacgtgctctccgccgtcaaatccgatgacatggcgccgc 198 ||||||||| | ||| |||||||| ||| | ||||||| ||||||| |||||||| | Sbjct: 445 ccaaggtcgccctccactccgacgccctcgacaccgtcaagtccgatggcatggcgctgt 386 Query: 199 tgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactgctcgccgaga 258 |||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| Sbjct: 385 tgttcgagtcgctggccgccacgggcgtgctggagccggacgacgcgctgctcaccgaga 326 Query: 259 tgcgcgcccggatcgacgaggag 281 |||||| || ||||| |||||| Sbjct: 325 tgcgcgtgcgaatcgatgaggag 303
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 133 bits (67), Expect = 5e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 139 ccaaggtcgacatccgctccgacgtgctctccgccgtcaaatccgatgacatggcgccgc 198 ||||||||| | ||| |||||||| ||| | ||||||| ||||||| |||||||| | Sbjct: 24130430 ccaaggtcgccctccactccgacgccctcgacaccgtcaagtccgatggcatggcgctgt 24130371 Query: 199 tgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactgctcgccgaga 258 |||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| Sbjct: 24130370 tgttcgagtcgctggccgccacgggcgtgctggagccggacgacgcgctgctcaccgaga 24130311 Query: 259 tgcgcgcccggatcgacgaggag 281 |||||| || ||||| |||||| Sbjct: 24130310 tgcgcgtgcgaatcgatgaggag 24130288
>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0028A08 Length = 150818 Score = 133 bits (67), Expect = 5e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 139 ccaaggtcgacatccgctccgacgtgctctccgccgtcaaatccgatgacatggcgccgc 198 ||||||||| | ||| |||||||| ||| | ||||||| ||||||| |||||||| | Sbjct: 83916 ccaaggtcgccctccactccgacgccctcgacaccgtcaagtccgatggcatggcgctgt 83857 Query: 199 tgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactgctcgccgaga 258 |||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| Sbjct: 83856 tgttcgagtcgctggccgccacgggcgtgctggagccggacgacgcgctgctcaccgaga 83797 Query: 259 tgcgcgcccggatcgacgaggag 281 |||||| || ||||| |||||| Sbjct: 83796 tgcgcgtgcgaatcgatgaggag 83774
>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09, complete sequence Length = 120583 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 57 ggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctcc 116 |||||||| ||||||||| || ||||||| |||| || |||||||| ||||||||||| Sbjct: 38711 ggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcg 38770 Query: 117 caccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgtc 176 ||||| ||||| ||||||||| ||||||||||| ||||| |||| || ||| |||| ||| Sbjct: 38771 cacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtc 38830 Query: 177 aaatccgatg 186 |||||||||| Sbjct: 38831 aaatccgatg 38840 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 306 gctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtcc 365 ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || Sbjct: 39737 gctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatctagccaaatcg 39796 Query: 366 ttgtactttgtaaaggttggcgagaagg 393 ||||| || ||| |||||| ||||||| Sbjct: 39797 ttgtatttcataagggttggagagaagg 39824 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Plus Query: 189 atggcgccgctgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactg 248 |||||| | |||| ||||||||||| ||| |||||||||||| ||||||| || ||| Sbjct: 39045 atggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacggacgctgcgctg 39104 Query: 249 ctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaa 301 ||||| |||||||||| | ||||||| ||||||||||| ||||| || ||||| Sbjct: 39105 ctcgcggagatgcgcggcaggatcgaggaggagatccggaagcttgacgagaa 39157 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 399 gcactggaacaacttaaagttactgaaggaaaaactgtagc 439 ||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 39913 gcactagaacagcttaaagttactgaaggaaaaactgtagc 39953
>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15, complete sequence Length = 150864 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 57 ggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctcc 116 |||||||| ||||||||| || ||||||| |||| || |||||||| ||||||||||| Sbjct: 105524 ggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcg 105583 Query: 117 caccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgtc 176 ||||| ||||| ||||||||| ||||||||||| ||||| |||| || ||| |||| ||| Sbjct: 105584 cacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtc 105643 Query: 177 aaatccgatg 186 |||||||||| Sbjct: 105644 aaatccgatg 105653 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 306 gctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtcc 365 ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || Sbjct: 106550 gctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatctagccaaatcg 106609 Query: 366 ttgtactttgtaaaggttggcgagaagg 393 ||||| || ||| |||||| ||||||| Sbjct: 106610 ttgtatttcataagggttggagagaagg 106637 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Plus Query: 189 atggcgccgctgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactg 248 |||||| | |||| ||||||||||| ||| |||||||||||| ||||||| || ||| Sbjct: 105858 atggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacggacgctgcgctg 105917 Query: 249 ctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaa 301 ||||| |||||||||| | ||||||| ||||||||||| ||||| || ||||| Sbjct: 105918 ctcgcggagatgcgcggcaggatcgaggaggagatccggaagcttgacgagaa 105970 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 399 gcactggaacaacttaaagttactgaaggaaaaactgtagc 439 ||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 106726 gcactagaacagcttaaagttactgaaggaaaaactgtagc 106766
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 57 ggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctcc 116 |||||||| ||||||||| || ||||||| |||| || |||||||| ||||||||||| Sbjct: 24216299 ggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcg 24216358 Query: 117 caccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgtc 176 ||||| ||||| ||||||||| ||||||||||| ||||| |||| || ||| |||| ||| Sbjct: 24216359 cacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtc 24216418 Query: 177 aaatccgatg 186 |||||||||| Sbjct: 24216419 aaatccgatg 24216428 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 306 gctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtcc 365 ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || Sbjct: 24217325 gctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatctagccaaatcg 24217384 Query: 366 ttgtactttgtaaaggttggcgagaagg 393 ||||| || ||| |||||| ||||||| Sbjct: 24217385 ttgtatttcataagggttggagagaagg 24217412 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Plus Query: 189 atggcgccgctgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactg 248 |||||| | |||| ||||||||||| ||| |||||||||||| ||||||| || ||| Sbjct: 24216633 atggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacggacgctgcgctg 24216692 Query: 249 ctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaa 301 ||||| |||||||||| | ||||||| ||||||||||| ||||| || ||||| Sbjct: 24216693 ctcgcggagatgcgcggcaggatcgaggaggagatccggaagcttgacgagaa 24216745 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 399 gcactggaacaacttaaagttactgaaggaaaaactgtagc 439 ||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 24217501 gcactagaacagcttaaagttactgaaggaaaaactgtagc 24217541
>emb|AL442114.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811E11, complete sequence Length = 59348 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 57 ggcgaggatgggaagcaggagaagcacctgttgcttgcccacaagctcttcctgctctcc 116 |||||||| ||||||||| || ||||||| |||| || |||||||| ||||||||||| Sbjct: 10774 ggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcg 10833 Query: 117 caccccgacgttgacgacctctccaaggtcgacatccgctccgacgtgctctccgccgtc 176 ||||| ||||| ||||||||| ||||||||||| ||||| |||| || ||| |||| ||| Sbjct: 10834 cacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtc 10893 Query: 177 aaatccgatg 186 |||||||||| Sbjct: 10894 aaatccgatg 10903 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 306 gctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtcc 365 ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || Sbjct: 11783 gctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatctagccaaatcg 11842 Query: 366 ttgtactttgtaaaggttggcgagaagg 393 ||||| || ||| |||||| ||||||| Sbjct: 11843 ttgtatttcataagggttggagagaagg 11870 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Plus Query: 189 atggcgccgctgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactg 248 |||||| | |||| ||||||||||| ||| |||||||||||| ||||||| || ||| Sbjct: 11091 atggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacggacgctgcgctg 11150 Query: 249 ctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaa 301 ||||| |||||||||| | ||||||| ||||||||||| ||||| || ||||| Sbjct: 11151 ctcgcggagatgcgcggcaggatcgaggaggagatccggaagcttgacgagaa 11203 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 399 gcactggaacaacttaaagttactgaaggaaaaactgtagc 439 ||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 11956 gcactagaacagcttaaagttactgaaggaaaaactgtagc 11996
>dbj|AK068044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132L02, full insert sequence Length = 1103 Score = 107 bits (54), Expect = 3e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 260 gcgcgcccggatcgacgaggagatccgcaagctcgatgagaatattgctgatgctgaaga 319 |||||| ||||||||||||||| ||||||||||||| | ||| |||||||| |||||||| Sbjct: 270 gcgcgcgcggatcgacgaggaggtccgcaagctcgacgggaagattgctgacgctgaaga 329 Query: 320 gaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtccttgtactt 373 ||| ||||| | || |||||||||||| |||||||| || | ||||||||||| Sbjct: 330 gaatttgggtgggattgaagtgcgtgaggcccatctagctgaatccttgtactt 383 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Plus Query: 93 gcccacaagctcttcctgctctcccaccccgacg 126 |||| |||||||||||| |||||||| ||||||| Sbjct: 98 gcccgcaagctcttcctcctctcccatcccgacg 131 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 151 tccgctccgacgtgctctccgccgtcaaatccg 183 ||||||||||||| ||| |||||||||||||| Sbjct: 163 tccgctccgacgtcctccacgccgtcaaatccg 195
>dbj|AK065211.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F23, full insert sequence Length = 3196 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 303 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 362 |||||||| ||||||||||| ||||| ||| |||||||||||| |||||| | ||||| Sbjct: 183 attgctgacgctgaagagaatttgggtgaggttgaagtgcgtgaggcccatatagccaaa 242 Query: 363 tccttgtactttgtaaaggttggcgagaagg 393 ||||||||||| ||| |||||| ||||||| Sbjct: 243 tccttgtacttcataagggttggggagaagg 273
>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_A02 Length = 175153 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 247 tgctcgccgagatgcgcgcccggatcgacgag 278 |||||||||| ||||||||| ||||||||||| Sbjct: 3124 tgctcgccgacatgcgcgcctggatcgacgag 3093
>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F05 Length = 147472 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 247 tgctcgccgagatgcgcgcccggatcgacgag 278 |||||||||| ||||||||| ||||||||||| Sbjct: 58481 tgctcgccgacatgcgcgcctggatcgacgag 58450
>dbj|AK111370.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A04, full insert sequence Length = 1236 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 247 tgctcgccgagatgcgcgcccggatcgacgag 278 |||||||||| ||||||||| ||||||||||| Sbjct: 136 tgctcgccgacatgcgcgcctggatcgacgag 105
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 250 tcgccgagatgcgcgcccggatc 272 ||||||||||||||||||||||| Sbjct: 1450599 tcgccgagatgcgcgcccggatc 1450577
>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome Length = 1796226 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 412 ttaaagttactgaaggaaaaactgt 436 ||||||||||||||||| ||||||| Sbjct: 198964 ttaaagttactgaaggacaaactgt 198988
>gb|BT014513.1| Lycopersicon esculentum clone 133900F, mRNA sequence Length = 1278 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 291 ctcgatgagaatattgctgatgctgaaga 319 ||||||||||| ||||||||||| ||||| Sbjct: 201 ctcgatgagaagattgctgatgcagaaga 229
>gb|AC165173.2| Zea mays clone ZMMBBb-125O19, complete sequence Length = 157660 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 cttgccaagtccttgtacttt 374 ||||||||||||||||||||| Sbjct: 10443 cttgccaagtccttgtacttt 10463
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 252 gccgagatgcgcgcccggatcgacg 276 ||||||| ||||||||||||||||| Sbjct: 18005 gccgagacgcgcgcccggatcgacg 17981
>emb|Z58867.1|HS110C4F H.sapiens CpG island DNA genomic Mse1 fragment, clone 110c4, forward read cpg110c4.ft1a Length = 264 Score = 42.1 bits (21), Expect = 1.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 33 ggcggtggcggcggaagcaccagcggcg 60 ||||||||||||||| ||| |||||||| Sbjct: 54 ggcggtggcggcggaggcancagcggcg 27
>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence Length = 203581 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 cttgccaagtccttgtacttt 374 ||||||||||||||||||||| Sbjct: 156702 cttgccaagtccttgtacttt 156722
>gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940122D9, complete sequence Length = 114898 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 ctggccgccacgggcgtgctg 230 ||||||||||||||||||||| Sbjct: 51906 ctggccgccacgggcgtgctg 51926
>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome Length = 1796846 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 412 ttaaagttactgaaggaaaaactgt 436 ||||||||||||||||| ||||||| Sbjct: 198958 ttaaagttactgaaggacaaactgt 198982
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaggcggtggcggcggaagc 50 |||||||||||||||||||| Sbjct: 47722 gaggcggtggcggcggaagc 47703
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ccgtcaaatccgatgacatg 191 |||||||||||||||||||| Sbjct: 613709 ccgtcaaatccgatgacatg 613728
>ref|XM_466372.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2832 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 tggacggaggcggtggcggcggaa 48 ||||||| |||||||||||||||| Sbjct: 2205 tggacggcggcggtggcggcggaa 2228
>gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, complete sequence Length = 268984 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 ggcggtggcggcggaagcaccagc 56 |||||||||||||| ||||||||| Sbjct: 173867 ggcggtggcggcggcagcaccagc 173890
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ccggatcgacgaggagatcc 285 |||||||||||||||||||| Sbjct: 336820 ccggatcgacgaggagatcc 336839
>gb|AC084295.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015K03, complete sequence Length = 89172 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 54906 gacggaggcggtggcggcgg 54887
>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0080I08, complete sequence Length = 197156 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 13626 gacggaggcggtggcggcgg 13607
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 22643 gacggaggcggtggcggcgg 22662
>ref|XM_958695.1| Neurospora crassa OR74A hypothetical protein (NCU03066.1) partial mRNA Length = 1653 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gagcggcgacgagatggacg 30 |||||||||||||||||||| Sbjct: 453 gagcggcgacgagatggacg 472
>ref|XM_330501.1| Neurospora crassa OR74A hypothetical protein (NCU03066.1) partial mRNA Length = 1653 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gagcggcgacgagatggacg 30 |||||||||||||||||||| Sbjct: 453 gagcggcgacgagatggacg 472
>gb|AC134256.4| Oryza sativa (japonica cultivar-group), complete sequence Length = 178233 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 163411 gacggaggcggtggcggcgg 163392
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 21329732 gacggaggcggtggcggcgg 21329751 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 16060688 gacggaggcggtggcggcgg 16060669
>gb|DQ002406.1| Zea mays copia retrotransposon ji and helitron Mo17_14577, complete sequence Length = 92777 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 2109 gacggaggcggtggcggcgg 2090
>gb|AY230344.1| Triticum aestivum clone 3W2-E3 nonfunctional FCA (Fca) mRNA, partial sequence Length = 2212 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 278 acggaggcggtggcggcgga 297
>gb|AY230335.1| Triticum aestivum clone 3W2-A1 FCA protein (Fca) mRNA, partial cds Length = 2226 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 298 acggaggcggtggcggcgga 317
>gb|AY230334.1| Triticum aestivum clone 3W2c-A10 FCA protein (Fca) mRNA, partial cds Length = 2172 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 249 acggaggcggtggcggcgga 268
>gb|AY230333.1| Triticum aestivum clone 3W2c-D5 nonfunctional FCA (Fca) mRNA, partial sequence Length = 2219 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 291 acggaggcggtggcggcgga 310
>gb|AY230379.1| Triticum aestivum clone 2Mb-E5 FCA protein (Fca) mRNA, partial cds Length = 2125 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 244 acggaggcggtggcggcgga 263
>gb|AY230377.1| Triticum aestivum clone 2Mb-G4a FCA protein (Fca) mRNA, partial cds Length = 2237 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 306 acggaggcggtggcggcgga 325
>gb|AY230376.1| Triticum aestivum clone 2Mb-C3e FCA protein (Fca) mRNA, partial cds Length = 2223 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 292 acggaggcggtggcggcgga 311
>gb|AY230370.1| Triticum aestivum clone 2Mb-A5d nonfunctional FCA (Fca) mRNA, partial sequence Length = 2166 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 234 acggaggcggtggcggcgga 253
>gb|AY230364.1| Triticum aestivum clone 2Mb-A11 nonfunctional FCA (Fca) mRNA, partial sequence Length = 2213 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 287 acggaggcggtggcggcgga 306
>gb|AY230345.1| Triticum aestivum clone 4S-G10 FCA protein (Fca) mRNA, partial cds Length = 2197 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 269 acggaggcggtggcggcgga 288
>gb|AY230401.1| Triticum aestivum FCA-B2 (Fca) mRNA, complete cds Length = 2579 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 352 acggaggcggtggcggcgga 371
>gb|AY230400.1| Triticum aestivum nonfunctional FCA-B1 (Fca) mRNA, partial sequence Length = 2785 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 544 acggaggcggtggcggcgga 563
>gb|AY230396.1| Triticum aestivum clone 1Nb-B6 nonfunctional FCA protein (Fca) mRNA, partial sequence Length = 2100 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 175 acggaggcggtggcggcgga 194
>gb|AY230395.1| Triticum aestivum clone 1Nb-G10 nonfunctional FCA protein (Fca) mRNA, partial sequence Length = 2273 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 342 acggaggcggtggcggcgga 361
>gb|AY230394.1| Triticum aestivum clone 1Nb-E3 nonfunctional FCA protein (Fca) mRNA, partial sequence Length = 2217 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 289 acggaggcggtggcggcgga 308
>gb|AY230320.1| Triticum aestivum FCA beta-B2 isoform (Fca) mRNA, partial sequence; alternatively spliced Length = 943 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 303 acggaggcggtggcggcgga 322
>gb|AY230319.1| Triticum aestivum FCA beta-B1 isoform (Fca) mRNA, partial sequence; alternatively spliced Length = 870 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acggaggcggtggcggcgga 47 |||||||||||||||||||| Sbjct: 336 acggaggcggtggcggcgga 355
>ref|XM_389492.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09316.1) partial mRNA Length = 651 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 151 tccgctccgacgtgctctccgccgtcaaatcc 182 |||||||||||||| || ||||| |||||||| Sbjct: 146 tccgctccgacgtgatccccgccatcaaatcc 177
>emb|AL445204.3| Human DNA sequence from clone RP11-232K22 on chromosome 13 Contains the 3' end of a novel gene, complete sequence Length = 129923 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcccacaagctcttcctgctctcc 116 ||||||||||||| |||||||||| Sbjct: 127106 gcccacaagctctccctgctctcc 127129 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcccacaagctcttcctgctctcc 116 ||||||||||||| |||||||||| Sbjct: 127043 gcccacaagctctccctgctctcc 127066 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcccacaagctcttcctgctctcc 116 ||||||||||||| |||||||||| Sbjct: 126994 gcccacaagctctccctgctctcc 127017 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gcccacaagctcttcctgctctcc 116 ||||||||||||| |||||||||| Sbjct: 126945 gcccacaagctctccctgctctcc 126968
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 tcgccgagatgcgcgcccgg 269 |||||||||||||||||||| Sbjct: 3048266 tcgccgagatgcgcgcccgg 3048247
>emb|BX842653.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 8/11 Length = 347636 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 gcggtggcggcggaagcacc 53 |||||||||||||||||||| Sbjct: 272983 gcggtggcggcggaagcacc 273002
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 ccgagatgcgcgcccggatcgacg 276 |||||| ||||||||||||||||| Sbjct: 107104 ccgagacgcgcgcccggatcgacg 107081
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 cgctggccgccacgggcgtgctgg 231 ||||||||||| |||||||||||| Sbjct: 312572 cgctggccgccgcgggcgtgctgg 312549
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 cgctggccgccacgggcgtgctgg 231 ||||||||||| |||||||||||| Sbjct: 76363 cgctggccgccgcgggcgtgctgg 76340
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gcttgcccacaagctcttcc 108 |||||||||||||||||||| Sbjct: 41378 gcttgcccacaagctcttcc 41397
>emb|CR550304.13| Zebrafish DNA sequence from clone CH211-150I13 in linkage group 13, complete sequence Length = 118999 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 aaagcactggaacaacttaa 415 |||||||||||||||||||| Sbjct: 47307 aaagcactggaacaacttaa 47326
>gb|AC020661.8| Homo sapiens chromosome 15 clone RP11-540O11 map 15q15, complete sequence Length = 191655 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 gaggatgggaagcaggagaagcac 83 ||||| |||||||||||||||||| Sbjct: 56287 gaggaggggaagcaggagaagcac 56310
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tcgagtcgctggccgccacg 221 |||||||||||||||||||| Sbjct: 1850841 tcgagtcgctggccgccacg 1850822
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 gagatggacggaggcggtggcggc 44 |||||||| ||||||||||||||| Sbjct: 13881505 gagatggagggaggcggtggcggc 13881482
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 18749031 gacggaggcggtggcggcgg 18749012
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 8613465 gacggaggcggtggcggcgg 8613484
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 21322761 gacggaggcggtggcggcgg 21322780 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 16055221 gacggaggcggtggcggcgg 16055202
>dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23 Length = 100041 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 tggacggaggcggtggcggcggaa 48 ||||||| |||||||||||||||| Sbjct: 47468 tggacggcggcggtggcggcggaa 47491
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ctcgccgagatgcgcgcccg 268 |||||||||||||||||||| Sbjct: 57683 ctcgccgagatgcgcgcccg 57702
>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0079G12 Length = 139796 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 134675 gacggaggcggtggcggcgg 134694
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 43261 gacggaggcggtggcggcgg 43280
>dbj|AK173984.1| Ciona intestinalis cDNA, clone:ciad008a24, full insert sequence Length = 274 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 gatgggaagcaggagaagca 82 |||||||||||||||||||| Sbjct: 1 gatgggaagcaggagaagca 20
>emb|AL805974.8| Mouse DNA sequence from clone RP23-334F21 on chromosome X, complete sequence Length = 95826 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tcttcctgctctcccacccc 122 |||||||||||||||||||| Sbjct: 68102 tcttcctgctctcccacccc 68083
>gb|L27063.1|STMDNAGYR Streptomyces coelicolor dnaA-gyrA region Length = 8200 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 gcttgcccacaagctcttcc 108 |||||||||||||||||||| Sbjct: 421 gcttgcccacaagctcttcc 402
>dbj|AK105900.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F08, full insert sequence Length = 1399 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 220 gacggaggcggtggcggcgg 201
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 cgaggagatccgcaagctcg 294 |||||||||||||||||||| Sbjct: 719714 cgaggagatccgcaagctcg 719695
>dbj|AK064910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M07, full insert sequence Length = 2833 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 tggacggaggcggtggcggcggaa 48 ||||||| |||||||||||||||| Sbjct: 2206 tggacggcggcggtggcggcggaa 2229
>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome Length = 161046 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 gacggaggcggtggcggcggaagc 50 ||||||||||| |||||||||||| Sbjct: 114513 gacggaggcggcggcggcggaagc 114536
>gb|AC006126.1|AC006126 Homo sapiens chromosome 19, cosmid F18718, complete sequence Length = 46100 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 33 ggcggtggcggcggaagcaccagcggcg 60 ||||||||||||||| ||| |||||||| Sbjct: 7344 ggcggtggcggcggaggcagcagcggcg 7371
>dbj|AB073546.1| Oryza sativa (japonica cultivar-group) OsCRY1a mRNA for cryptochrome 1a, complete cds Length = 2587 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 tggacggaggcggtggcggcggaa 48 ||||||| |||||||||||||||| Sbjct: 1880 tggacggcggcggtggcggcggaa 1903
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gctgttcgagtcgctggccg 216 |||||||||||||||||||| Sbjct: 1701706 gctgttcgagtcgctggccg 1701725
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gacggaggcggtggcggcgg 46 |||||||||||||||||||| Sbjct: 18908432 gacggaggcggtggcggcgg 18908413
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 gagatggacggaggcggtggcggc 44 |||||||| ||||||||||||||| Sbjct: 13835785 gagatggagggaggcggtggcggc 13835762
>emb|AL928747.3|CNS08CBK Oryza sativa chromosome 12, . BAC OSJNBa0017A21 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144552 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 gagatggacggaggcggtggcggc 44 |||||||| ||||||||||||||| Sbjct: 18133 gagatggagggaggcggtggcggc 18110
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 ctcgccgagatgcgcgcccg 268 |||||||||||||||||||| Sbjct: 1854519 ctcgccgagatgcgcgcccg 1854500
>gb|M91440.1|PSETERP Pseudomonas sp. alcohol dehydrogenase (terpD) gene, complete cds; aldehyde dehydrogenase (terpE) gene, complete cds; P450terp (terpC) gene, complete cds; terpredoxin reductase (terpA) gene, complete cds; terpredoxin (terpB) gene, complete cds Length = 6620 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 atccgcaagctcgatgagaatatt 305 |||||||||||||| ||||||||| Sbjct: 3607 atccgcaagctcgaagagaatatt 3630
>dbj|AB024337.1| Oryza sativa (japonica cultivar-group) mRNA for blue-light photoreceptor, complete cds Length = 2797 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 tggacggaggcggtggcggcggaa 48 ||||||| |||||||||||||||| Sbjct: 2153 tggacggcggcggtggcggcggaa 2176 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,721,143 Number of Sequences: 3902068 Number of extensions: 3721143 Number of successful extensions: 91228 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89482 Number of HSP's gapped (non-prelim): 1737 length of query: 443 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 421 effective length of database: 17,147,199,772 effective search space: 7218971104012 effective search space used: 7218971104012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
