ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast40h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106631.1| Zea mays PCO131934 mRNA sequence 60 5e-06
2dbj|AK121700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
3dbj|AK105759.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
4gb|AY105287.1| Zea mays PCO135091 mRNA sequence 50 0.005
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.078
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.078
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.078
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.078
9emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb... 46 0.078
10emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa... 46 0.078
11dbj|AB168324.1| Macaca fascicularis testis cDNA clone: QtsA-1122... 44 0.31
12gb|AC093366.9| Mus musculus chromosome 8, clone RP23-60P23, comp... 42 1.2
13gb|AC158582.2| Mus musculus chromosome 7, clone RP24-173K12, com... 42 1.2
14emb|AL355361.39| Human DNA sequence from clone RP11-58N22 on chr... 42 1.2
15emb|AL049690.20|HSJ1060K6 Human DNA sequence from clone RP5-1060... 42 1.2
16emb|BX294135.1| Pirellula sp. strain 1 complete genome; segment ... 42 1.2
17gb|AC073257.6| Homo sapiens BAC clone RP11-213H22 from 2, comple... 42 1.2
18ref|NM_023978.1| Rattus norvegicus period homolog 3 (Drosophila)... 42 1.2
19dbj|BS000112.1| Pan troglodytes chromosome 22 clone:RP43-076J24,... 42 1.2
20gb|AC112685.16| Mus musculus chromosome 3, clone RP23-340E10, co... 42 1.2
21dbj|AB092512.1| Rattus norvegicus rper3 mRNA for period3, comple... 42 1.2
22gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, com... 42 1.2
23emb|AJ401312.1|SHY401312 Saccharum hybrid cultivar R570 microsat... 42 1.2
24gb|AC108429.11| Mus musculus chromosome 7, clone RP23-161B5, com... 40 4.8
25gb|AC120841.7| Mus musculus chromosome 8, clone RP24-553L18, com... 40 4.8
26gb|AC119834.12| Mus musculus chromosome 5, clone RP24-383P24, co... 40 4.8
27gb|AC113983.13| Mus musculus chromosome 5, clone RP24-95M11, com... 40 4.8
28gb|AC121313.8| Mus musculus chromosome 14, clone RP24-395N22, co... 40 4.8
29gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 4.8
30ref|XM_842735.1| Leishmania major strain Friedlin hypothetical p... 40 4.8
31gb|AC124201.4| Mus musculus BAC clone RP23-329B24 from chromosom... 40 4.8
32gb|AC116679.9| Mus musculus chromosome 12, clone RP23-391I19, co... 40 4.8
33gb|AC101875.7| Mus musculus chromosome 12, clone RP23-367G12, co... 40 4.8
34emb|BX248405.4| Human DNA sequence from clone RP11-265K22 on chr... 40 4.8
35emb|AL591647.14| Human DNA sequence from clone RP11-92F1 on chro... 40 4.8
36emb|AL355853.22| Human DNA sequence from clone RP11-36B21 on chr... 40 4.8
37emb|AL162376.15| Human DNA sequence from clone RP11-309J13 on ch... 40 4.8
38gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, com... 40 4.8
39gb|AC159097.5| Mus musculus chromosome 8, clone RP24-310O9, comp... 40 4.8
40dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
41gb|AC114980.2| Homo sapiens chromosome 5 clone RP11-549J18, comp... 40 4.8
42dbj|AP004745.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
43gb|AC153911.5| Mus musculus 10 BAC RP23-182J19 (Roswell Park Can... 40 4.8
44gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, co... 40 4.8
45emb|AL451077.9| Human DNA sequence from clone RP11-305A3 on chro... 40 4.8
46emb|AL132711.5|CNS01DTC Human chromosome 14 DNA sequence BAC R-5... 40 4.8
47gb|AC153021.2| Mus musculus 10 BAC RP23-37G3 (Roswell Park Cance... 40 4.8
48emb|AL670464.12| Mouse DNA sequence from clone RP23-12I24 on chr... 40 4.8 
>gb|AY106631.1| Zea mays PCO131934 mRNA sequence
          Length = 433

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 61/70 (87%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 291 atgagccaggaggatgtgctcaagataca-gacctgcgtgctcaaggtgaacatccactg 349
           |||||| ||||||| ||||||||| | || ||| |||||||| || ||||| ||||||||
Sbjct: 215 atgagcaaggaggacgtgctcaaggtgcaagacttgcgtgctgaaagtgaatatccactg 274

                     
Query: 350 cgatgggtgc 359
           ||||||||||
Sbjct: 275 cgatgggtgc 284
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>dbj|AK121700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073F21, full
           insert sequence
          Length = 2324

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                       
Query: 298 aggaggatgtgctcaagatacagacctgcgtgctcaaggtgaacatccactgcgatgggt 357
           ||||||| || || ||||| ||||| || ||||| || |||||||||||||| |||||||
Sbjct: 334 aggaggaagtcctgaagattcagacttgtgtgctgaaagtgaacatccactgtgatgggt 393

              
Query: 358 gcc 360
           |||
Sbjct: 394 gcc 396
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>dbj|AK105759.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D05, full
           insert sequence
          Length = 2027

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                       
Query: 298 aggaggatgtgctcaagatacagacctgcgtgctcaaggtgaacatccactgcgatgggt 357
           ||||||| || || ||||| ||||| || ||||| || |||||||||||||| |||||||
Sbjct: 51  aggaggaagtcctgaagattcagacttgtgtgctgaaagtgaacatccactgtgatgggt 110

              
Query: 358 gcc 360
           |||
Sbjct: 111 gcc 113
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>gb|AY105287.1| Zea mays PCO135091 mRNA sequence
          Length = 825

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 327 gtgctcaaggtgaacatccactgcgatgggtgc 359
           ||||||||||||||||| |||||||| ||||||
Sbjct: 226 gtgctcaaggtgaacatacactgcgacgggtgc 258
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 318     cagacctgcgtgctcaaggtgaacatccactgcgatgggtgcc 360
               ||||| || ||||| || |||||||||||||| ||||||||||
Sbjct: 2193562 cagacttgtgtgctgaaagtgaacatccactgtgatgggtgcc 2193604
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 318     cagacctgcgtgctcaaggtgaacatccactgcgatgggtgcc 360
               ||||| || ||||| || |||||||||||||| ||||||||||
Sbjct: 2151815 cagacttgtgtgctgaaagtgaacatccactgtgatgggtgcc 2151857



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 45      ttatcttcagcaagaaggca 64
               ||||||||||||||||||||
Sbjct: 2151342 ttatcttcagcaagaaggca 2151361
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 318     cagacctgcgtgctcaaggtgaacatccactgcgatgggtgcc 360
               ||||| || ||||| || |||||||||||||| ||||||||||
Sbjct: 2159596 cagacttgtgtgctgaaagtgaacatccactgtgatgggtgcc 2159638



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 45      ttatcttcagcaagaaggca 64
               ||||||||||||||||||||
Sbjct: 2159123 ttatcttcagcaagaaggca 2159142
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 318     cagacctgcgtgctcaaggtgaacatccactgcgatgggtgcc 360
               ||||| || ||||| || |||||||||||||| ||||||||||
Sbjct: 2193506 cagacttgtgtgctgaaagtgaacatccactgtgatgggtgcc 2193548
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>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132703

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 318   cagacctgcgtgctcaaggtgaacatccactgcgatgggtgcc 360
             ||||| || ||||| || |||||||||||||| ||||||||||
Sbjct: 75786 cagacttgtgtgctgaaagtgaacatccactgtgatgggtgcc 75828
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>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 125593

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 318   cagacctgcgtgctcaaggtgaacatccactgcgatgggtgcc 360
             ||||| || ||||| || |||||||||||||| ||||||||||
Sbjct: 48509 cagacttgtgtgctgaaagtgaacatccactgtgatgggtgcc 48551



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    ttatcttcagcaagaaggca 64
             ||||||||||||||||||||
Sbjct: 48036 ttatcttcagcaagaaggca 48055
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>dbj|AB168324.1| Macaca fascicularis testis cDNA clone: QtsA-11222, similar to human
            RAB1B, member RAS oncogene family (RAB1B), mRNA, RefSeq:
            NM_030981.1
          Length = 2028

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 173  ccttcttcctgctctcctgccc 194
            ||||||||||||||||||||||
Sbjct: 1047 ccttcttcctgctctcctgccc 1068
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>gb|AC093366.9| Mus musculus chromosome 8, clone RP23-60P23, complete sequence
          Length = 230236

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 85     cacactgtcacacacactcac 105
              |||||||||||||||||||||
Sbjct: 136155 cacactgtcacacacactcac 136135
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>gb|AC158582.2| Mus musculus chromosome 7, clone RP24-173K12, complete sequence
          Length = 169636

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 85     cacactgtcacacacactcac 105
              |||||||||||||||||||||
Sbjct: 161297 cacactgtcacacacactcac 161317
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>emb|AL355361.39| Human DNA sequence from clone RP11-58N22 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 153070

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   tcctggtagctgccttcttcc 181
             |||||||||||||||||||||
Sbjct: 25067 tcctggtagctgccttcttcc 25047
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>emb|AL049690.20|HSJ1060K6 Human DNA sequence from clone RP5-1060K6 on chromosome 20p12.1-13
             Contains the RPS11P1 gene for ribosomal protein S11
             pseudogene 1, complete sequence
          Length = 117349

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 85    cacactgtcacacacactcac 105
             |||||||||||||||||||||
Sbjct: 35853 cacactgtcacacacactcac 35873
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>emb|BX294135.1| Pirellula sp. strain 1 complete genome; segment 3/24
          Length = 340750

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 252   tcgtcgttgtgccgctgcgtt 272
             |||||||||||||||||||||
Sbjct: 27352 tcgtcgttgtgccgctgcgtt 27372
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>gb|AC073257.6| Homo sapiens BAC clone RP11-213H22 from 2, complete sequence
          Length = 120488

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 85    cacactgtcacacacactcacgctc 109
             ||||| |||||||||||||||||||
Sbjct: 20885 cacaccgtcacacacactcacgctc 20861
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>ref|NM_023978.1| Rattus norvegicus period homolog 3 (Drosophila) (Per3), mRNA
          Length = 3360

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 45   ttatcttcagcaagaaggcag 65
            |||||||||||||||||||||
Sbjct: 2082 ttatcttcagcaagaaggcag 2102
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>dbj|BS000112.1| Pan troglodytes chromosome 22 clone:RP43-076J24, map 22, complete
             sequences
          Length = 169786

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 85    cacactgtcacacacactcac 105
             |||||||||||||||||||||
Sbjct: 49933 cacactgtcacacacactcac 49913
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>gb|AC112685.16| Mus musculus chromosome 3, clone RP23-340E10, complete sequence
          Length = 248750

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    tattatcttcagcaagaaggc 63
             |||||||||||||||||||||
Sbjct: 56305 tattatcttcagcaagaaggc 56325
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>dbj|AB092512.1| Rattus norvegicus rper3 mRNA for period3, complete cds
          Length = 3360

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 45   ttatcttcagcaagaaggcag 65
            |||||||||||||||||||||
Sbjct: 2082 ttatcttcagcaagaaggcag 2102
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>gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, complete sequence
          Length = 196013

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 85    cacactgtcacacacactcac 105
             |||||||||||||||||||||
Sbjct: 97383 cacactgtcacacacactcac 97403
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>emb|AJ401312.1|SHY401312 Saccharum hybrid cultivar R570 microsatellite DNA, clone mSSCIR35
          Length = 712

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 327 gtgctcaaggtgaacatccactgcgatgggtgc 359
           ||||||||||||||||| ||||| || ||||||
Sbjct: 346 gtgctcaaggtgaacatacactgtgacgggtgc 314
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>gb|AC108429.11| Mus musculus chromosome 7, clone RP23-161B5, complete sequence
          Length = 186903

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    tcacactgtcacacacactc 103
             ||||||||||||||||||||
Sbjct: 75660 tcacactgtcacacacactc 75679
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>gb|AC120841.7| Mus musculus chromosome 8, clone RP24-553L18, complete sequence
          Length = 143963

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 83    ctcacactgtcacacacactcacgctct 110
             |||||||| |||||||||||||| ||||
Sbjct: 78470 ctcacactctcacacacactcacactct 78443
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>gb|AC119834.12| Mus musculus chromosome 5, clone RP24-383P24, complete sequence
          Length = 223764

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 80     gccctcacactgtcacacacactcacgc 107
              ||||||||||| || |||||||||||||
Sbjct: 215579 gccctcacactctctcacacactcacgc 215606
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>gb|AC113983.13| Mus musculus chromosome 5, clone RP24-95M11, complete sequence
          Length = 198590

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 80     gccctcacactgtcacacacactcacgc 107
              ||||||||||| || |||||||||||||
Sbjct: 139000 gccctcacactctctcacacactcacgc 138973
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>gb|AC121313.8| Mus musculus chromosome 14, clone RP24-395N22, complete sequence
          Length = 131620

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 83    ctcacactgtcacacacactcacgctct 110
             |||||||| |||||||||||||| ||||
Sbjct: 91819 ctcacactctcacacacactcacactct 91846
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    cgttgtgccgctgcgtttcg 275
              ||||||||||||||||||||
Sbjct: 738891 cgttgtgccgctgcgtttcg 738910
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>ref|XM_842735.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0805)
           partial mRNA
          Length = 1059

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 cgttgtgccgctgcgtttcg 275
           ||||||||||||||||||||
Sbjct: 898 cgttgtgccgctgcgtttcg 879
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>gb|AC124201.4| Mus musculus BAC clone RP23-329B24 from chromosome 8, complete sequence
          Length = 234158

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 83     ctcacactgtcacacacactcacgctct 110
              |||||||| |||||||||||||| ||||
Sbjct: 222926 ctcacactctcacacacactcacactct 222953
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>gb|AC116679.9| Mus musculus chromosome 12, clone RP23-391I19, complete sequence
          Length = 261992

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   agctgccttcttcctgctctcctg 191
             |||| |||||||||||||||||||
Sbjct: 93458 agctcccttcttcctgctctcctg 93481
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>gb|AC101875.7| Mus musculus chromosome 12, clone RP23-367G12, complete sequence
          Length = 184813

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    ggacagttattatattatcttcag 54
             ||||| ||||||||||||||||||
Sbjct: 90474 ggacatttattatattatcttcag 90497
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>emb|BX248405.4| Human DNA sequence from clone RP11-265K22 on chromosome 1 Contains part
             of the gene for a novel protein (FLJ16613), complete
             sequence
          Length = 88146

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    cactgtcacacacactcacg 106
             ||||||||||||||||||||
Sbjct: 67424 cactgtcacacacactcacg 67443
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>emb|AL591647.14| Human DNA sequence from clone RP11-92F1 on chromosome 1 Contains the
             SNFT gene for Jun dimerization protein p21SNFT, a novel
             gene (DC8) (DKFZP566O1646) and a CpG island, complete
             sequence
          Length = 97826

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 82    cctcacactgtcacacacactcac 105
             |||||||| |||||||||||||||
Sbjct: 16256 cctcacacagtcacacacactcac 16279
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>emb|AL355853.22| Human DNA sequence from clone RP11-36B21 on chromosome 13, complete
              sequence
          Length = 146641

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     tattatattatcttcagcaa 57
              ||||||||||||||||||||
Sbjct: 104166 tattatattatcttcagcaa 104185
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>emb|AL162376.15| Human DNA sequence from clone RP11-309J13 on chromosome 13, complete
              sequence
          Length = 191606

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    ccttcttcctgctctcctgc 192
              ||||||||||||||||||||
Sbjct: 177494 ccttcttcctgctctcctgc 177513
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>gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, complete sequence
          Length = 153684

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     tattatattatcttcagcaa 57
              ||||||||||||||||||||
Sbjct: 122681 tattatattatcttcagcaa 122700
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>gb|AC159097.5| Mus musculus chromosome 8, clone RP24-310O9, complete sequence
          Length = 179528

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 83     ctcacactgtcacacacactcacgctct 110
              |||||||| |||||||||||||| ||||
Sbjct: 168047 ctcacactctcacacacactcacactct 168020
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 83       ctcacactgtcacacacact 102
                ||||||||||||||||||||
Sbjct: 19264219 ctcacactgtcacacacact 19264200
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>gb|AC114980.2| Homo sapiens chromosome 5 clone RP11-549J18, complete sequence
          Length = 181927

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    agttattatattatcttcag 54
             ||||||||||||||||||||
Sbjct: 69024 agttattatattatcttcag 69043
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>dbj|AP004745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0001B01
          Length = 147585

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     ctcacactgtcacacacact 102
              ||||||||||||||||||||
Sbjct: 101983 ctcacactgtcacacacact 101964
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>gb|AC153911.5| Mus musculus 10 BAC RP23-182J19 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 219859

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    tcacactgtcacacacactc 103
             ||||||||||||||||||||
Sbjct: 20772 tcacactgtcacacacactc 20791
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>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence
          Length = 141316

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     tattatattatcttcagcaa 57
              ||||||||||||||||||||
Sbjct: 135631 tattatattatcttcagcaa 135612
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>emb|AL451077.9| Human DNA sequence from clone RP11-305A3 on chromosome 1, complete
              sequence
          Length = 173609

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     cctcacactgtcacacacactcac 105
              |||||||| |||||||||||||||
Sbjct: 135303 cctcacacagtcacacacactcac 135280
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>emb|AL132711.5|CNS01DTC Human chromosome 14 DNA sequence BAC R-566J3 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185799

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     cacactgtcacacacactca 104
              ||||||||||||||||||||
Sbjct: 131294 cacactgtcacacacactca 131313
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>gb|AC153021.2| Mus musculus 10 BAC RP23-37G3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187132

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    tcacactgtcacacacactc 103
             ||||||||||||||||||||
Sbjct: 91810 tcacactgtcacacacactc 91791
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>emb|AL670464.12| Mouse DNA sequence from clone RP23-12I24 on chromosome 4, complete
              sequence
          Length = 203558

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    tcctgctctcctgcccctga 198
              ||||||||||||||||||||
Sbjct: 111373 tcctgctctcctgcccctga 111392


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,256,480
Number of Sequences: 3902068
Number of extensions: 3256480
Number of successful extensions: 71646
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71394
Number of HSP's gapped (non-prelim): 252
length of query: 360
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 338
effective length of database: 17,147,199,772
effective search space: 5795753522936
effective search space used: 5795753522936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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