ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast40h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1G6PI_CAUCR (Q9ABK5) Glucose-6-phosphate isomerase (EC 5.3.1.9) (... 30 1.6
2IF2_RHIME (Q92SW4) Translation initiation factor IF-2 29 3.6
3Y4VH_RHISN (Q53216) Hypothetical 24.6 kDa protein y4vH 28 4.7
4PRAF1_CANFA (Q8HY39) Prenylated Rab acceptor protein 1 (PRA1 fam... 28 4.7
5CCA_BACLD (Q65I54) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21)... 28 6.1
6PRAF1_HUMAN (Q9UI14) Prenylated Rab acceptor protein 1 (PRA1 fam... 28 8.0

>G6PI_CAUCR (Q9ABK5) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 539

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 269 GEGVRPREGRAVDHLGPRAPVGQRAPRRLGDPAHEEAERRR 147
           GE +   EGRAV H   RAP G    + LG P   E +  R
Sbjct: 80  GEAINSSEGRAVLHTALRAPAGADV-KALGQPVMAEVDAVR 119



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>IF2_RHIME (Q92SW4) Translation initiation factor IF-2|
          Length = 889

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 257 RPREGRAVDHLGPRAPVGQRAPRRLGDPAHEEAERRRG 144
           RP+ GRA     P AP G     R G  + E+  RR G
Sbjct: 196 RPQPGRAAPAATPAAPDGAALRGRRGTESEEDERRRSG 233



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>Y4VH_RHISN (Q53216) Hypothetical 24.6 kDa protein y4vH|
          Length = 218

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 266 EGVRPREGRAVDHLGPRAPVGQRAPRRLGDPAHEEAERR 150
           E  RP +    +  GPR P+G   P    DP +E ++RR
Sbjct: 165 EKQRPPKSSEAERFGPRQPIGAPHP---NDPVYELSKRR 200



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>PRAF1_CANFA (Q8HY39) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
          Length = 185

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 183 ESARRSLSDRRPWAEMVDRSAFSRPDSLSD 272
           E   R  +  RPW+  VD+  FSRP +L +
Sbjct: 33  ERLERRRATIRPWSSFVDQRRFSRPRNLGE 62



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>CCA_BACLD (Q65I54) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 397

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 248 EGRAVDHLGPRAPVGQRAPRRLGDPA---HEEAER 153
           EGR +D+ G    + +R  + +GDPA   HE+A R
Sbjct: 123 EGRLIDYFGGLRDIRERLIQTVGDPAERFHEDALR 157



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>PRAF1_HUMAN (Q9UI14) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
          Length = 185

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 213 RPWAEMVDRSAFSRPDSLSD 272
           RPW+  VD+  FSRP +L +
Sbjct: 43  RPWSTFVDQQRFSRPRNLGE 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.134    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,714,491
Number of Sequences: 219361
Number of extensions: 314135
Number of successful extensions: 1349
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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