ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast40h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CDPK3_ORYSA (P53684) Calcium-dependent protein kinase, isoform 1... 33 0.18
2CDPK_SOYBN (P28583) Calcium-dependent protein kinase SK5 (EC 2.7... 32 0.30
3CDPK1_ARATH (Q06850) Calcium-dependent protein kinase, isoform A... 29 2.6
4CDPK1_ORYSA (P53682) Calcium-dependent protein kinase, isoform 1... 29 3.4
5RECR_LEIXX (Q6AGY5) Recombination protein recR 28 5.7
6DOF24_ARATH (O80928) Dof zinc finger protein DOF2.4 (AtDOF2.4) 28 7.5
7CPXG_STRSQ (P23296) Cytochrome P450 105C1 (EC 1.14.-.-) 27 9.8
8TRSF_DROVI (Q24761) Female-specific protein transformer 27 9.8
9TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Ta... 27 9.8

>CDPK3_ORYSA (P53684) Calcium-dependent protein kinase, isoform 11 (EC 2.7.11.1)|
           (CDPK 11)
          Length = 542

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +2

Query: 263 SVLPHKTANVRDHYRIGKKLGQ 328
           +VL  KTA++R+HY IG+KLGQ
Sbjct: 66  NVLGRKTADLREHYIIGRKLGQ 87



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>CDPK_SOYBN (P28583) Calcium-dependent protein kinase SK5 (EC 2.7.11.1) (CDPK)|
          Length = 508

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 266 VLPHKTANVRDHYRIGKKLGQ 328
           VLP +T N+R+ Y +G+KLGQ
Sbjct: 22  VLPQRTQNIREVYEVGRKLGQ 42



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>CDPK1_ARATH (Q06850) Calcium-dependent protein kinase, isoform AK1 (EC|
           2.7.11.1) (CDPK)
          Length = 610

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 263 SVLPHKTANVRDHYRIGKKLGQ 328
           SVL  KT N ++ Y +G+KLGQ
Sbjct: 137 SVLQRKTENFKEFYSLGRKLGQ 158



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>CDPK1_ORYSA (P53682) Calcium-dependent protein kinase, isoform 1 (EC 2.7.11.1)|
           (CDPK 1)
          Length = 534

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 266 VLPHKTANVRDHYRIGKKLGQ 328
           VL +KT NVR+ Y +G++LGQ
Sbjct: 61  VLGYKTPNVRELYTLGRELGQ 81



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>RECR_LEIXX (Q6AGY5) Recombination protein recR|
          Length = 198

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 21/45 (46%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +3

Query: 24  ICRAPLRDPEL-----SAFSSVAIRRNPHRRFRGLRAVLDPGRAP 143
           ICR P RDP L      A   VAI R   R FRGL  VL    +P
Sbjct: 70  ICRDPRRDPALICVVEEAKDVVAIERT--REFRGLYHVLGGAISP 112



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>DOF24_ARATH (O80928) Dof zinc finger protein DOF2.4 (AtDOF2.4)|
          Length = 330

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 12  ESPRICRAPLRDPELSAFSSVAIRRNPHR 98
           ESPRI  A +     S FSSV +  NP++
Sbjct: 281 ESPRITSASISSALASQFSSVKVEDNPYK 309



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>CPXG_STRSQ (P23296) Cytochrome P450 105C1 (EC 1.14.-.-)|
          Length = 381

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 148 VLGARPGSRTARRPRNLRWGFLRIATEENAESSGSRSGALQIL 20
           +LG  P  R   +   LRWG    +TEE  E+  S  G LQ L
Sbjct: 139 LLGVPPPDREHFQHDTLRWGGFGRSTEEVTEAFVSLGGQLQRL 181



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>TRSF_DROVI (Q24761) Female-specific protein transformer|
          Length = 199

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 144 LARALDQERHGGRETSDGDSCGLRRRKTQKARDLG 40
           L+R+  + R G R+ +   SC  RRR   ++R  G
Sbjct: 81  LSRSYVRHRSGSRQKTYSSSCSRRRRSRSRSRSRG 115



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>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2014

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -3

Query: 154  WRVLGARPGSRTARRPRNLRW----GFLRIATEENA 59
            WR  G  P  R+A RP +L W    G LR A E+ A
Sbjct: 1207 WRAEGTSPHQRSAERPPDLDWRDLLGLLR-APEDGA 1241


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,748,970
Number of Sequences: 219361
Number of extensions: 522607
Number of successful extensions: 1325
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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