| Clone Name | bast40h03 |
|---|---|
| Clone Library Name | barley_pub |
>MYCN_MARMO (Q61976) N-myc proto-oncogene protein (N-myc1)| Length = 460 Score = 36.2 bits (82), Expect = 0.034 Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = -3 Query: 331 PELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGG-AGRALVAVDARLQLP 176 P A A PGAG A AG HG G G+ GA LP A A VD + P Sbjct: 141 PPAAGPATPGAGAANPAGRGHGGTAGAGRAGAALPAELAHPAAECVDPAVVFP 193
>MYCN_HUMAN (P04198) N-myc proto-oncogene protein| Length = 464 Score = 34.7 bits (78), Expect = 0.098 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = -3 Query: 307 PGAGIAATAGEAHGPVDGRGQRGAELPGG-AGRALVAVDARLQLP 176 PGAG A+ AG HG G G+ GA LP A A VD + P Sbjct: 150 PGAGAASPAGRGHGGAAGAGRAGAALPAELAHPAAECVDPAVVFP 194
>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 33.5 bits (75), Expect = 0.22 Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 16/67 (23%) Frame = -3 Query: 367 RAHLRRCRLPAAPELAVHARP--------------GAGIAA--TAGEAHGPVDGRGQRGA 236 R R RLPAAP A A+ G G+AA TAG G +GRG+R A Sbjct: 389 RGGRRDPRLPAAPRAAPAAQARACSPEPREEGRGAGLGVAAGETAGWGVGSEEGRGERRA 448 Query: 235 ELPGGAG 215 +L G AG Sbjct: 449 KLLGEAG 455
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 33.5 bits (75), Expect = 0.22 Identities = 27/67 (40%), Positives = 31/67 (46%), Gaps = 16/67 (23%) Frame = -3 Query: 367 RAHLRRCRLPAAPELAVHARP--------------GAGIAA--TAGEAHGPVDGRGQRGA 236 R R RLPAAP A A+ G G+AA TAG G +GRG+R A Sbjct: 389 RGGRRDPRLPAAPRAAPAAQARACSPEPREEGRGAGLGVAAGETAGWGAGSEEGRGERRA 448 Query: 235 ELPGGAG 215 L G AG Sbjct: 449 RLLGEAG 455
>KPCE_RABIT (P10830) Protein kinase C epsilon type (EC 2.7.11.13)| (nPKC-epsilon) Length = 736 Score = 31.6 bits (70), Expect = 0.83 Identities = 18/46 (39%), Positives = 21/46 (45%) Frame = -3 Query: 355 RRCRLPAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGA 218 RRC AP V AR A + A G + GQR +L GGA Sbjct: 282 RRCETNVAPNCGVDARGIAKVLADLGVTPDKITNSGQRRKKLIGGA 327
>EMIL1_HUMAN (Q9Y6C2) EMILIN-1 precursor (Elastin microfibril interface-located| protein 1) (Elastin microfibril interfacer 1) Length = 1016 Score = 31.6 bits (70), Expect = 0.83 Identities = 22/62 (35%), Positives = 27/62 (43%) Frame = -3 Query: 370 LRAHLRRCRLPAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGAGRALVAVDA 191 LR + RC P P A PG G G + GP+DG G G +G AL A+ Sbjct: 595 LRDGVERCSCPLLPPRGPGAGPGVG-----GPSRGPLDGFSVFG----GSSGSALQALQG 645 Query: 190 RL 185 L Sbjct: 646 EL 647
>EMIL1_MOUSE (Q99K41) EMILIN-1 precursor (Elastin microfibril interface-located| protein 1) (Elastin microfibril interfacer 1) Length = 1017 Score = 31.6 bits (70), Expect = 0.83 Identities = 22/62 (35%), Positives = 27/62 (43%) Frame = -3 Query: 370 LRAHLRRCRLPAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGAGRALVAVDA 191 LR + RC P P A PG G G + GP+DG G G +G AL A+ Sbjct: 596 LRDGVERCSCPLLPPRGPGAGPGVG-----GPSRGPLDGFSVFG----GSSGSALQALQG 646 Query: 190 RL 185 L Sbjct: 647 EL 648
>CEBPA_BOVIN (O02754) CCAAT/enhancer-binding protein alpha (C/EBP alpha)| Length = 353 Score = 31.2 bits (69), Expect = 1.1 Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 1/83 (1%) Frame = -3 Query: 427 PPAHPVVEWPEVLH*GHPHLRAHLRRCRLPAAPELAVHARPGAGI-AATAGEAHGPVDGR 251 PP P P H PHL+ + C + +H +PG T + P Sbjct: 183 PPPPPPNSHPPPAHLAAPHLQFQIAHC-----GQTTMHLQPGHPTPPPTPVPSPHPAPAL 237 Query: 250 GQRGAELPGGAGRALVAVDARLQ 182 G G PGGA + LVA L+ Sbjct: 238 GAAGLPGPGGALKGLVATHPDLR 260
>SYA_MYCPA (P61705) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 900 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = -3 Query: 340 PAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGAGRALVAVDARLQLPR 173 PAA +L + A + PVDGRG A+L G+G+ +DA L R Sbjct: 841 PAAQDLGIRAND------LVKQLAAPVDGRGGGKADLAQGSGKDPAGIDAALDAVR 890
>PO4F1_HUMAN (Q01851) POU domain, class 4, transcription factor 1| (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1) Length = 423 Score = 30.8 bits (68), Expect = 1.4 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 5/46 (10%) Frame = -3 Query: 337 AAPELAVHARPG----AGIAATAGEAH-GPVDGRGQRGAELPGGAG 215 ++P LA+ A G AG AA G AH GP G G G PGG G Sbjct: 121 SSPSLALMAGAGGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGG 166
>PGCA_HUMAN (P16112) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) (Chondroitin sulfate proteoglycan core protein 1) [Contains: Aggrecan core protein 2] Length = 2415 Score = 30.4 bits (67), Expect = 1.9 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +2 Query: 104 NGGPGMEDAAATLATELDGLLAMARELEARVDGDQ---GAPGAARELCSALAASVD 262 +GG G+E +A+ + T+L GL + LE G + G P +L + + +D Sbjct: 1435 SGGEGLETSASEVGTDLSGLPSGREGLETSASGAEDLSGLPSGKEDLVGSASGDLD 1490
>KPCE_RAT (P09216) Protein kinase C epsilon type (EC 2.7.11.13)| (nPKC-epsilon) Length = 737 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/46 (36%), Positives = 20/46 (43%) Frame = -3 Query: 355 RRCRLPAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGA 218 RRC AP V AR A + A G + GQR +L GA Sbjct: 282 RRCETNVAPNCGVDARGIAKVLADLGVTPDKITNSGQRRKKLAAGA 327
>KPCE_MOUSE (P16054) Protein kinase C epsilon type (EC 2.7.11.13)| (nPKC-epsilon) Length = 737 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/46 (36%), Positives = 20/46 (43%) Frame = -3 Query: 355 RRCRLPAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGA 218 RRC AP V AR A + A G + GQR +L GA Sbjct: 282 RRCETNVAPNCGVDARGIAKVLADLGVTPDKITNSGQRRKKLAAGA 327
>ARGR_MYCPA (Q740I4) Arginine repressor| Length = 164 Score = 30.0 bits (66), Expect = 2.4 Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 13/96 (13%) Frame = +2 Query: 14 SECESETRKARALTVSSGATDRSVS*VRALNGGPGMEDAAATLATELDGLLA-------- 169 +E R+AR + + S A RS S + AL G+E ATL+ +L+ L A Sbjct: 8 TETTRAARQARIVAILSSAQVRSQSELAALLADEGIEVTQATLSRDLEELGAVKLRGADG 67 Query: 170 -----MARELEARVDGDQGAPGAARELCSALAASVD 262 M E + V G G L S L S D Sbjct: 68 GVGVYMVPEDGSPVRGVSGGTARLSRLLSELLVSAD 103
>HLES_DROME (Q02308) Protein hairless| Length = 1077 Score = 26.6 bits (57), Expect(2) = 3.1 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -3 Query: 337 AAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGAGRALVAVDA 191 A+P L+ H +PG AA A A + + A G G A+ A A Sbjct: 923 ASPLLSPHPQPGGSAAAAAAAAAARLSPQSAYHAFAYNGVGAAVAAAAA 971 Score = 21.6 bits (44), Expect(2) = 3.1 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -1 Query: 414 PSSSGPRSCIEATRTCVRTFAAAAFLP 334 P+S+ P S A AAAA++P Sbjct: 868 PTSAPPTSNSSAAAVAAAAAAAAAYIP 894
>MYSB_ACACA (P19706) Myosin heavy chain IB (Myosin heavy chain IL)| Length = 1147 Score = 29.6 bits (65), Expect = 3.2 Identities = 19/43 (44%), Positives = 19/43 (44%) Frame = -3 Query: 340 PAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGAGR 212 P P PGAG G GP GRG G PGGAGR Sbjct: 1015 PGGPGRGGPGGPGAG----RGGPGGPGAGRGGPGMGGPGGAGR 1053
>KPCE_HUMAN (Q02156) Protein kinase C epsilon type (EC 2.7.11.13)| (nPKC-epsilon) Length = 737 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/46 (36%), Positives = 20/46 (43%) Frame = -3 Query: 355 RRCRLPAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGA 218 RRC AP V AR A + A G + GQR +L GA Sbjct: 282 RRCETNVAPNCGVDARGIAKVLADLGVTPDKITNSGQRRKKLIAGA 327
>S12A2_MOUSE (P55012) Solute carrier family 12 member 2 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 1) (Basolateral Na-K-Cl symporter) Length = 1205 Score = 29.3 bits (64), Expect = 4.1 Identities = 19/43 (44%), Positives = 19/43 (44%) Frame = -3 Query: 340 PAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGAGR 212 PA P LA ARPG G AA GP G E AGR Sbjct: 5 PAGPRLAPAARPGWGRAAGCRRRGGPARHGRASGQEDATTAGR 47
>DNAJ_THET2 (Q72GN6) Chaperone protein dnaJ| Length = 350 Score = 29.3 bits (64), Expect = 4.1 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 11/80 (13%) Frame = -3 Query: 379 HPHLRAH----LRRCRLPAAPELAVHAR---PGAG----IAATAGEAHGPVDGRGQRGAE 233 HPHL + R RL A + A+ AR PG + G HG V G Sbjct: 236 HPHLERQGPDLVYRLRLGLA-QAALGARVVVPGLEGPIPLDIPPGTGHGEVFALEGGGLP 294 Query: 232 LPGGAGRALVAVDARLQLPR 173 LPGG GR + V L +P+ Sbjct: 295 LPGGRGRGTLRVVVELAVPK 314
>DNAJ1_THET8 (Q5SLW9) Chaperone protein dnaJ 1| Length = 350 Score = 29.3 bits (64), Expect = 4.1 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 11/80 (13%) Frame = -3 Query: 379 HPHLRAH----LRRCRLPAAPELAVHAR---PGAG----IAATAGEAHGPVDGRGQRGAE 233 HPHL + R RL A + A+ AR PG + G HG V G Sbjct: 236 HPHLERQGPDLVYRLRLGLA-QAALGARVEVPGLEGPIPLDIPPGTGHGEVFALEGGGLP 294 Query: 232 LPGGAGRALVAVDARLQLPR 173 LPGG GR + V L +P+ Sbjct: 295 LPGGRGRGTLRVVVELAVPK 314
>IE18_PRVKA (P33479) Immediate-early protein IE180| Length = 1446 Score = 28.9 bits (63), Expect = 5.4 Identities = 20/54 (37%), Positives = 21/54 (38%) Frame = -3 Query: 382 GHPHLRAHLRRCRLPAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGG 221 G P A R PA P A G A+ A A GPV G GA GG Sbjct: 199 GEPGPAARPRTPAPPAQPAAVAAAPARRGPASPASPAAGPVSAPGGGGAPSAGG 252
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/41 (39%), Positives = 18/41 (43%) Frame = -3 Query: 340 PAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGA 218 PAAPE A + A GP G + GA PGGA Sbjct: 139 PAAPEFTAPPAAPAAPSTPAPAPSGPKPGGARPGAPKPGGA 179
>NPB_HUMAN (Q8NG41) Neuropeptide B precursor (Preproprotein L7) (hPPL7)| [Contains: Neuropeptide B-23 (NPB23) (hL7); Neuropeptide B-29 (NPB29) (hL7C)] Length = 125 Score = 28.9 bits (63), Expect = 5.4 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 11/61 (18%) Frame = -3 Query: 364 AHLRRCRLPAAPELAVHARPGAGIAA-TAGEAHGPVDG--------RGQ--RGAELPGGA 218 A L C L A P LA + +P AG ++ + G A G + G R Q RGAE PGGA Sbjct: 10 AALALCLLLAPPGLAWY-KPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGA 68 Query: 217 G 215 G Sbjct: 69 G 69
>FOXD3_MOUSE (Q61060) Forkhead box protein D3 (HNF3/FH transcription factor| genesis) (Hepatocyte nuclear factor 3 forkhead homolog 2) (HFH-2) Length = 465 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/43 (39%), Positives = 19/43 (44%) Frame = -3 Query: 337 AAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGAGRA 209 A P ++ GAG AA G A G G G G GG G A Sbjct: 358 ARPSFSIENIIGAGSAAPGGSAGGGGSGGGAGGGGGSGGGGGA 400
>RUVA_SILPO (Q5LNT7) Holliday junction ATP-dependent DNA helicase ruvA (EC| 3.6.1.-) Length = 224 Score = 28.5 bits (62), Expect = 7.1 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Frame = -3 Query: 340 PAAPELAVHARPGAGIAATAGE-------AHGPVDGR---GQRGAELPGGAGRALVAVDA 191 PAAP A PG AATAG +GP D Q AE P L+ Sbjct: 158 PAAPAPRKAAPPGGAGAATAGALSALSNLGYGPSDAAAAVAQAAAEAPEAGETDLIRAAL 217 Query: 190 RLQLPR 173 RL P+ Sbjct: 218 RLLAPK 223
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 28.5 bits (62), Expect = 7.1 Identities = 20/54 (37%), Positives = 21/54 (38%) Frame = -3 Query: 382 GHPHLRAHLRRCRLPAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGG 221 G P A R PA P A G A+ A A GPV G GA GG Sbjct: 207 GEPGPAARPRTPAPPAQPAAVAAAPARRGPASPASPAAGPVSAPGGGGAPSGGG 260
>G3P_CLOPA (Q59309) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)| (GAPDH) (CP 17/CP 18) Length = 334 Score = 28.5 bits (62), Expect = 7.1 Identities = 18/60 (30%), Positives = 25/60 (41%) Frame = -3 Query: 376 PHLRAHLRRCRLPAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGAGRALVAV 197 PH + RR R A + IA E G +DG QR +P G+ L++V Sbjct: 189 PHRKGDFRRARAAAVSIIPNSTGAAKAIAQVIPELKGKLDGNAQR-VPVPTGSVTELISV 247
>TRPD_THETH (P83827) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 329 Score = 28.5 bits (62), Expect = 7.1 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 17/84 (20%) Frame = -3 Query: 376 PHLRAHLRRCRLPAAPELAVHARPGAGIAATAGEAHG-----------------PVDGRG 248 PH A + R AA L VH RP I T G+ G V G Sbjct: 49 PHEIAAMARAMREAARPLRVHRRPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHG 108 Query: 247 QRGAELPGGAGRALVAVDARLQLP 176 R A G+ L A+ L+ P Sbjct: 109 NRAASSRAGSADLLEALGVDLEAP 132
>TRPD_THET8 (Q5SH88) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 329 Score = 28.5 bits (62), Expect = 7.1 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 17/84 (20%) Frame = -3 Query: 376 PHLRAHLRRCRLPAAPELAVHARPGAGIAATAGEAHG-----------------PVDGRG 248 PH A + R AA L VH RP I T G+ G V G Sbjct: 49 PHEIAAMARAMREAARPLRVHRRPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHG 108 Query: 247 QRGAELPGGAGRALVAVDARLQLP 176 R A G+ L A+ L+ P Sbjct: 109 NRAASSRAGSADLLEALGVDLEAP 132
>PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS54 precursor| Length = 1901 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -3 Query: 304 GAGIAATAGEAHGPVDGRGQRGAELPGGAG 215 GAG A G+A GP G G PGGAG Sbjct: 140 GAGAAGAPGQAGGPGGPAGLWGNGGPGGAG 169
>GATA6_HUMAN (Q92908) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 449 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/42 (40%), Positives = 19/42 (45%) Frame = -3 Query: 313 ARPGAGIAATAGEAHGPVDGRGQRGAELPGGAGRALVAVDAR 188 A PG A+ +G G GA PGGAG A V AR Sbjct: 75 AHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSAR 116
>HYDL_STRCO (P42534) Putative polyketide hydroxylase (EC 1.14.13.-) (WhiE ORF| VIII) Length = 627 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/45 (40%), Positives = 21/45 (46%) Frame = -3 Query: 346 RLPAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGAGR 212 R P A + A + + G A PV G G GA PGGAGR Sbjct: 366 RRPVAEATSARAAHRSVEHSHPGFAPPPVAGGGGPGAGTPGGAGR 410
>RORA_MOUSE (P51448) Nuclear receptor ROR-alpha (Nuclear receptor RZR-alpha)| Length = 523 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = -3 Query: 340 PAAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGAGRALVAVDAR 188 PAAP+ A +G A AG P+ R +E PG R A +R Sbjct: 5 PAAPDPAASEPGSSGSEAAAGSRETPLTQDTGRKSEAPGAGRRQSYASSSR 55
>PO4F1_MOUSE (P17208) POU domain, class 4, transcription factor 1| (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0) Length = 421 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/41 (46%), Positives = 22/41 (53%) Frame = -3 Query: 337 AAPELAVHARPGAGIAATAGEAHGPVDGRGQRGAELPGGAG 215 ++P LA+ A GAG A AG G DG G G PGG G Sbjct: 121 SSPSLALMA--GAGGAGAAGGGGGAHDGPGGGGG--PGGGG 157
>ANF_FUGRU (Q805D8) Atrial natriuretic factor precursor (ANF) (Atrial| natriuretic peptide) (ANP) (Prepronatriodilatin) Length = 139 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = -3 Query: 121 HARPSVQRTHLANRSISGARRDRERACF 38 H+RPSVQR+HL + +S R R +CF Sbjct: 94 HSRPSVQRSHLQDLLMS--LRKRASSCF 119 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,259,812 Number of Sequences: 219361 Number of extensions: 584191 Number of successful extensions: 2570 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2378 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2560 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)